DY260268

Overview
NameDY260268
Unique NameDY260268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1034
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260268 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.649e-44
Identity = 105/190 (55.26%), Postives = 129/190 (67.89%), Query Frame = 2
Query:   95 SVLPARVTGIR-KSGVYQFSSVK--YLPGTLQRNVSLSVRCMAKNEQQKDQ-----------STQPP-----KLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGNTLV 607
            S++   +T I  +S V QF+++   Y+P TL+RNVSL VR MA+ E ++             ST  P     + P++STKFSD+ AFSGPAPERINGRLAMIGFVAA+ VE++KGQ +  QLS GGVAWFLGT          P F+GVSVESKS   M+SDAE WNGR AM+GLVALA TEFVKG +LV
Sbjct:    8 SIMSNSMTNISSRSRVNQFTNIPSVYIP-TLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196          
BLAST of DY260268 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 9.067e-35
Identity = 87/200 (43.50%), Postives = 122/200 (61.00%), Query Frame = 2
Query:   47 STKMAASLPTQSMLGSSVLPARVTGIRKSGVYQFSSVKYLPGTLQRNVSLSVRCMAKN------EQQKDQSTQP------PKLPRISTKFS-DVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGNTLV 607
            S+   A++P  S  G S     +T    + ++       LP  ++RN   +VR M ++      +QQK Q T        P    ++TK + D+F+F G APERINGR AMIGFVAA+ VEL+ G+DVF+Q+ +GGV WFL T          P+++G+S E+K++GF  SDAE+WNGRFAM+GLVALA TE+VKG  L+
Sbjct:    3 SSTCYATIPAMSCRGQST----ITRFGPNNLFLGKQSYELP-LMRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197          
BLAST of DY260268 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.942e-30
Identity = 78/181 (43.09%), Postives = 100/181 (55.25%), Query Frame = 2
Query:   56 MAASLPTQSMLGSSVLPARVTGIRKSGVYQFSSVKYLPGTLQRNVSLSVRCMAKNEQQKDQSTQPPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDG-GVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKG 595
            MA  +   S  G++V+P       +S    F + + LP       +L  R +    Q +  S  PP  P+ ST   D  AFSGPAPERINGRLAM+GFV ALAVE  +G  + +QL  G G AWF  T          PL +G S E ++   M ++AELWNGRFAM+GLVALA TE + G
Sbjct:    1 MATMMSMSSFAGAAVVP-------RSSASSFGA-RSLP-------ALGRRALVVRAQTEGPSAPPPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITG 166          
BLAST of DY260268 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.942e-30
Identity = 77/185 (41.62%), Postives = 98/185 (52.97%), Query Frame = 2
Query:   56 MAASLPTQSMLGSSVLPARVTGIRKSGVYQFSSVKYLPGTLQRNVSLSVRCMAKNEQQKDQSTQPPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDG-GVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGNTLV 607
            MA  +   S  G++VLP               S + LP       +L  R +    Q +  +  PP  P+ ST   D  AFSGPAPERINGRLAM+GFV ALAVE  +G  + +QL  G G AWF  T          PL +G S E ++   M ++AELWNGRFAM+GLVALA TE + G   +
Sbjct:    1 MATMMAMSSFAGAAVLPR-------------GSARSLP-------ALGRRTLVVRAQTEGPNAPPPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITGTPFI 165          
BLAST of DY260268 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.268e-28
Identity = 70/129 (54.26%), Postives = 84/129 (65.12%), Query Frame = 2
Query:  242 TQPPKLPRISTKFS-----DVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLS--DGGVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGNTLV 607
            T  P  P+  TK +     D  AFSGPAPERINGRLAM+GFVAAL+VE ++G  +  Q+     G+AWFL T          PL +G SVESKS G  ++DAELWNGRFAM+GLVALA TEF+ G   V
Sbjct:  101 TTIPAAPKPVTKKANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229          
BLAST of DY260268 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 5.173e-14
Identity = 61/162 (37.65%), Postives = 76/162 (46.91%), Query Frame = 2
Query:  149 SSVKYLPGTLQRNVSLSVRCMAKNEQQKDQSTQPPKLPR--------ISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXXPLFKGVSVESKSD--GFMTSDAELWNGRFAMMGLVALAVTEFVKGNTL 604
            +S+   P  L R  +    C      + + ST PP  P          +   ++V  FSG APE INGRLAM+GFVAAL  ELS G+ V  QL D      L T          P F       K D  G  T DAE+ NGRFAM+G  A+ V E ++G  L
Sbjct:   16 ASINVRPAPLLRTAAPKRVCKHIVRAENNPSTPPPSSPSPPPPPPTPAAPTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQGIAL 171          
The following BLAST results are available for this feature:
BLAST of DY260268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA1.649e-4455.26Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL9.067e-3543.50Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI9_HORVU3.942e-3043.09Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU3.942e-3041.62Low molecular mass early light-inducible protein H... [more]
ELI5_HORVU1.268e-2854.26High molecular mass early light-inducible protein ... [more]
CBR_DUNBA5.173e-1437.65Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YP04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260268 ID=DY260268; Name=DY260268; organism=Citrus clementina; type=EST; length=1034bp
TTAACCTAATAACTCCCAGTTGCTAAATTATTCCTCCGTTGCATAATCTA
CAAAAATGGCTGCTTCACTCCCCACTCAATCTATGCTTGGAAGCTCTGTC
CTCCCAGCTCGTGTTACCGGCATCAGGAAATCTGGGGTGTACCAATTTTC
CTCTGTTAAGTACTTACCTGGTACTCTGCAGAGAAATGTTAGCTTATCAG
TGCGCTGCATGGCTAAGAATGAGCAGCAGAAGGATCAATCAACTCAGCCA
CCAAAGCTACCGCGTATAAGCACGAAGTTCTCTGACGTGTTTGCGTTCAG
CGGGCCGGCACCGGAGAGGATAAACGGGAGGCTTGCGATGATTGGGTTCG
TGGCTGCATTGGCGGTGGAGCTATCCAAGGGTCAGGATGTGTTTGCCCAG
TTATCAGACGGTGGAGTTGCCTGGTTCTTGGGGACCAGTGTTCTGCTTTC
GGTTGCGTCCCTGGTTCCTTTGTTTAAAGGTGTCAGCGTGGAGTCTAAAT
CGGATGGGTTCATGACTTCCGATGCTGAGTTGTGGAATGGGAGGTTCGCT
ATGATGGGTCTTGTTGCTTTGGCTGTCACTGAGTTTGTTAAAGGCAATAC
CCTTGTTTATTTAATTCCCATTTTCCAGTGATATGCCGACCCGCCGAGTC
CTGAAATGATAACAAAACCCTATTCTTAAAACTTGAAGCCCCCCGTCCTG
TTTCCTCCCTGGGCAATTTATTTGTATGAATTAGGGGGGGGGTGGATGGA
AAATCTTTTGTTTCCCCCTGCCCATTTCCCCAAAAAAATCCCCCCTTCTC
CTTTAAAAAAAAAAAAAAAAAAAAAACCCCCCTTTTCCCCGAACACAATT
GGCCTTTAAAAAAAAAGCCCTTCCTCATCCCTTTTTTTGCCCACAAAACC
GGCCCAACCACCCCAAAAAAAAAACACTTTTTTTCCCCCCCCACGTCAAA
ATCCCCCCAAAGCGACGTCCAACAAAACGGTGCCCACAACGTCCTCCCCG
GCACCCCCCGGGCCCCGGGCTCCCACAAATCCCT
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