DY260276

Overview
NameDY260276
Unique NameDY260276
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1022
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: AGD11_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana GN=AGD11 PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 2.320e-74
Identity = 129/211 (61.14%), Postives = 157/211 (74.41%), Query Frame = 2
Query:  140 SGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPNPNSFIDERSDFIRRKYEKLEFFNFDEQALLCPYPAPHRRXXXXXXXXXXHDKKHYEKQATRHRIGIAFRNSWGRKESESKNSRKANSLVAMVEFVGLIKVHVVKGTNLAVRDVM 772
            S PR RLE LL+QPGN++CADCGSP+PKWVSLS GVFICIKCSG+HRSLGVHISKVLSVKLDEWT++QVD L   GGN AVN+++EA      KKP P+S  +ER+DFIR+KYE+ +F +  +   LC Y  P R                   ++T++RIG AFRNSWGR+ES+ K  +K+NS+  MVEFVGLIKV+VVKGTNLAVRDVM
Sbjct:   44 SDPRDRLEKLLKQPGNKYCADCGSPEPKWVSLSLGVFICIKCSGVHRSLGVHISKVLSVKLDEWTDDQVDMLVGYGGNTAVNERFEACNIDQSKKPKPDSTNEERNDFIRKKYEQHQFMD-PKDGALCTYQQPSRTNTSPPSLCSA------SHRSTKNRIGHAFRNSWGRRESDHKGPKKSNSMAGMVEFVGLIKVNVVKGTNLAVRDVM 247          

HSP 2 Score: 44.669 bits (104), Expect = 2.320e-74
Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 3
Query:  774 TSDPYVILARGHQTVRTRGIKNHPDPGLEGKFYGCHFPKTFPPPKVLV**KGT 932
            TSDPYVILA G Q+V+TR IKN+ +P +  +      P+  PP KVLV  K T
Sbjct:  248 TSDPYVILALGQQSVKTRVIKNNLNP-VWNETLMLSIPEPMPPLKVLVYDKDT 299          
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: AGD13_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD13 OS=Arabidopsis thaliana GN=AGD13 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.086e-40
Identity = 95/215 (44.19%), Postives = 126/215 (58.60%), Query Frame = 2
Query:  140 SGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPNPNSFIDERSDFIRRKYEKLEFFNFDEQALLCPYPAPHRRXXXXXXXXXXHDKKHYEKQATRHRIGIAFRNSWGRKESESKNSRKANSLV---AMVEFVGLIKVHVVKGTNLAVRDVMN 775
            SG R R+ +LL QP NR CADCG+ DPKW S + GVFIC+KC G+HRSLG HISKVLSV LDEW++E+VD++ E+GGN + N  YEA+ P    KP P+   D+R  FIR KYE  EF              P  R                 K +T+    +   +S  RK  +S  +  ++  +    MVEF+GL+KV + KGTNLA+RD+M+
Sbjct:   13 SGKR-RIRDLLNQPDNRVCADCGASDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDEWSDEEVDSMIEIGGNASANSIYEAFLPDTCSKPGPDVNHDQRMRFIRAKYELQEFLK------------PSLRITSG-------------KGSTKSSAFLT--SSLSRKIMDSFRTNSSSQTMFQEGMVEFIGLLKVTIKKGTNLAIRDMMS 199          
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: AGD12_ARATH (ADP-ribosylation factor GTPase-activating protein AGD12 OS=Arabidopsis thaliana GN=AGD12 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.419e-40
Identity = 93/212 (43.87%), Postives = 124/212 (58.49%), Query Frame = 2
Query:  140 SGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPNPNSFIDERSDFIRRKYEKLEFFNFDEQALLCPYPAPHRRXXXXXXXXXXHDKKHYEKQATRHRIGIAFRNSWGRKESESKNSRKANSLVAMVEFVGLIKVHVVKGTNLAVRDVMN 775
            SG R R+ +LL Q  NR CADCG+PDPKW S + GVFIC+KC G+HRSLG HISKVLSV LDEW++E+VD++ E+GGN + N  YEA+ P    KP P++  D+R  FIR KYE  EF              P  R               +   +   +I  +FR         + +S +   L  MVEF+GL+KV + KGTN+A+RD+M+
Sbjct:   13 SGKR-RIRDLLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWSDEEVDSMIEIGGNASANSIYEAFIPEGSSKPGPDASHDQRMRFIRSKYEHQEFLK------------PSLRITSVRGSST--KTPAFLSSSLSKKIVDSFR---------TNSSSQQPQLEGMVEFIGLLKVTIKKGTNMAIRDMMS 200          
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: SMAP2_MOUSE (Stromal membrane-associated protein 2 OS=Mus musculus GN=Smap2 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 6.836e-27
Identity = 60/123 (48.78%), Postives = 82/123 (66.67%), Query Frame = 2
Query:  131 KNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPNPNSFIDERSDFIRRKYEKLEFFN 499
            K+V   +A L NLL +  N+ CADC S  P+W S + GVFICI+C+GIHR+LGVHIS+V SV LD+WT EQ+  + EM GN   N+ YEAY P   ++P  +  ++    FIR KYEK ++ +
Sbjct:    7 KDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEM-GNGKANRLYEAYLPETFRRPQIDPAVE---GFIRDKYEKKKYMD 125          
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: SMAP2_HUMAN (Stromal membrane-associated protein 2 OS=Homo sapiens GN=SMAP2 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 6.836e-27
Identity = 60/123 (48.78%), Postives = 82/123 (66.67%), Query Frame = 2
Query:  131 KNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPNPNSFIDERSDFIRRKYEKLEFFN 499
            K+V   +A L NLL +  N+ CADC S  P+W S + GVFICI+C+GIHR+LGVHIS+V SV LD+WT EQ+  + EM GN   N+ YEAY P   ++P  +  ++    FIR KYEK ++ +
Sbjct:    7 KDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEM-GNGKANRLYEAYLPETFRRPQIDPAVE---GFIRDKYEKKKYMD 125          
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: SMAP2_BOVIN (Stromal membrane-associated protein 2 OS=Bos taurus GN=SMAP2 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 6.836e-27
Identity = 60/123 (48.78%), Postives = 82/123 (66.67%), Query Frame = 2
Query:  131 KNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPNPNSFIDERSDFIRRKYEKLEFFN 499
            K+V   +A L NLL +  N+ CADC S  P+W S + GVFICI+C+GIHR+LGVHIS+V SV LD+WT EQ+  + EM GN   N+ YEAY P   ++P  +  ++    FIR KYEK ++ +
Sbjct:    7 KDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEM-GNGKANRLYEAYLPETFRRPQIDHAVE---GFIRDKYEKKKYMD 125          
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: SMAP2_CHICK (Stromal membrane-associated protein 2 OS=Gallus gallus GN=SMAP2 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.989e-26
Identity = 57/123 (46.34%), Postives = 84/123 (68.29%), Query Frame = 2
Query:  131 KNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPNPNSFIDERSDFIRRKYEKLEFFN 499
            ++V   +A L +LL +  N++CADC +  P+W S + GVFICI+C+GIHR+LGVHIS+V SV LD+WT EQ+  + EM GN   N+ YEA+ P N ++P  +  ++    FIR KYEK ++ +
Sbjct:    7 RDVERYQAVLGSLLSEEENKYCADCQAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEM-GNGKANRLYEAFLPENFRRPQTDQAVE---GFIRDKYEKKKYMD 125          
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: SMAP1_MOUSE (Stromal membrane-associated protein 1 OS=Mus musculus GN=Smap1 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.899e-25
Identity = 54/114 (47.37%), Postives = 77/114 (67.54%), Query Frame = 2
Query:  158 LENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPNPNSFIDERSDFIRRKYEKLEFFN 499
            L  LLR+  N++CADC +  P+W S + GVFICI+C+GIHR+LGVHIS+V SV LD+WT EQ+  + +M GN      YEA  P N ++P  +  ++    FIR KYEK ++++
Sbjct:   21 LSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTPEQIQCMQDM-GNTKARLLYEANLPENFRRPQTDQAVE---FFIRDKYEKKKYYD 130          
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: SMAP1_HUMAN (Stromal membrane-associated protein 1 OS=Homo sapiens GN=SMAP1 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 4.899e-25
Identity = 54/114 (47.37%), Postives = 77/114 (67.54%), Query Frame = 2
Query:  158 LENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPNPNSFIDERSDFIRRKYEKLEFFN 499
            L  LLR+  N++CADC +  P+W S + GVFICI+C+GIHR+LGVHIS+V SV LD+WT EQ+  + +M GN      YEA  P N ++P  +  ++    FIR KYEK ++++
Sbjct:   21 LSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDM-GNTKARLLYEANLPENFRRPQTDQAVE---FFIRDKYEKKKYYD 130          
BLAST of DY260276 vs. ExPASy Swiss-Prot
Match: ADAP1_HUMAN (Arf-GAP with dual PH domain-containing protein 1 OS=Homo sapiens GN=ADAP1 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 1.207e-23
Identity = 61/132 (46.21%), Postives = 82/132 (62.12%), Query Frame = 2
Query:  149 RARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPNPNSFIDERSDFIRRKYEKLEFFNFDEQALLCPYPAPHR 544
            RA LE LL++PGN  CADCG+PDP W S + GVFIC+ CSGIHR++   +SKV SV+LD W   QV+ +A   GN A   ++E+  P    +P P+     R  +IR KYE+ EF   ++Q    PY A +R
Sbjct:    7 RAVLE-LLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMAS-HGNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEKQE---PYSAGYR 132          
The following BLAST results are available for this feature:
BLAST of DY260276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
AGD11_ARATH2.320e-7461.14Probable ADP-ribosylation factor GTPase-activating... [more]
AGD13_ARATH1.086e-4044.19Probable ADP-ribosylation factor GTPase-activating... [more]
AGD12_ARATH1.419e-4043.87ADP-ribosylation factor GTPase-activating protein ... [more]
SMAP2_MOUSE6.836e-2748.78Stromal membrane-associated protein 2 OS=Mus muscu... [more]
SMAP2_HUMAN6.836e-2748.78Stromal membrane-associated protein 2 OS=Homo sapi... [more]
SMAP2_BOVIN6.836e-2748.78Stromal membrane-associated protein 2 OS=Bos tauru... [more]
SMAP2_CHICK1.989e-2646.34Stromal membrane-associated protein 2 OS=Gallus ga... [more]
SMAP1_MOUSE4.899e-2547.37Stromal membrane-associated protein 1 OS=Mus muscu... [more]
SMAP1_HUMAN4.899e-2547.37Stromal membrane-associated protein 1 OS=Homo sapi... [more]
ADAP1_HUMAN1.207e-2346.21Arf-GAP with dual PH domain-containing protein 1 O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YP24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260276 ID=DY260276; Name=DY260276; organism=Citrus clementina; type=EST; length=1022bp
GTTACCCATTTGCTTTAACACAAAGAAGGAGATGATAAATGGCTTCGCTG
AGATTGTAGCAGCGTTCTGATGATTCTGGTCTTATATTTGGAGGCTGGAG
ATGGCAACCCAGCATGCAAATTCTGATCCCAAAAATGTTTCTGGTCCACG
AGCAAGGCTGGAGAATCTATTGAGGCAACCCGGTAATAGGCATTGTGCAG
ATTGTGGATCTCCTGATCCAAAATGGGTATCATTAAGTACTGGAGTGTTT
ATTTGTATCAAGTGTTCTGGTATTCATAGAAGCCTTGGAGTGCATATATC
AAAGGTTCTATCAGTGAAGCTTGATGAATGGACAAATGAACAAGTTGATG
CTTTGGCAGAAATGGGCGGCAATATTGCAGTAAACAAGAAGTATGAAGCT
TACACTCCTGGCAATCTCAAGAAACCAAATCCGAATTCGTTTATAGACGA
GCGCTCAGATTTTATCAGGAGAAAATACGAGAAGCTAGAATTTTTTAATT
TTGATGAACAGGCGTTATTATGCCCATATCCAGCTCCCCATAGACGTTCA
TCATCCTCCAGCACTAGTTCTTCAAGCCATGATAAGAAACATTACGAAAA
ACAAGCAACAAGACATCGTATTGGAATCGCATTTCGTAACAGCTGGGGAA
GAAAGGAATCTGAGAGTAAGAACTCTAGGAAGGCCAACTCACTGGTAGCT
ATGGTTGAGTTTGTTGGATTGATTAAGGTCCATGTGGTCAAAGGCACCAA
CCTAGCTGTTCGGGATGTTATGAACTAGCGATCCCTATGTCATCCTTGCT
CGGGGTCATCAAACGGTTAGAACGCGTGGAATAAAAAACCACCCGGATCC
CGGTTTGGAAGGAAAGTTCTATGGTTGTCATTTCCCAAAAACATTCCCCC
CCCCGAAAGTGCTTGTATAATGAAAAGGGACCCTTTTCCAACCTGAAGGA
CTTTTTGGGGGGGAAGGCCCGAATTTAAAATTCACCCCTTTTTAATGGAA
CCCCCCCCCCCCAACCCCGTTC
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