DY260312

Overview
NameDY260312
Unique NameDY260312
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1176
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY260312 vs. ExPASy Swiss-Prot
Match: TRAC9_MAIZE (Putative AC9 transposase OS=Zea mays PE=4 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 8.077e-22
Identity = 50/141 (35.46%), Postives = 85/141 (60.28%), Query Frame = 2 
Query:    2 ILKAYNAQRLRIKAMLKEVPGRICFTSDLWTACTTDGYMSLTAHFIDKNWVLQKRLLNFTLMPSPHTGLCLSEKLLSLWTEWGVEKKVFSITLDNASANDACVTMLKSQLKIRKA-LLSNADYLHLRRSAQIIQLIARHGL 421
            I+  Y  ++ ++   LK+V  R   T D+WT+C    YM +T H+ID +W LQKR++ F  +   HTG  LS+   ++  +W +EKK+F+++LDNASAN+  V  +   L+   + L+ +  + H+R +  I+ L+A+ GL
Sbjct:  219 IMDLYLEEKEKLYGKLKDVQSRFSTTMDMWTSCQNKSYMCVTIHWIDDDWCLQKRIVGFFHVEGRHTGQRLSQTFTAIMVKWNIEKKLFALSLDNASANEVAVHDIIEDLQDTDSNLVCDGAFFHVRCACHILNLVAKDGL 359
[Close]
BLAST of DY260312 vs. ExPASy Swiss-Prot
Match: TRA1_MAIZE (Putative AC transposase OS=Zea mays PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 8.077e-22
Identity = 50/141 (35.46%), Postives = 85/141 (60.28%), Query Frame = 2 
Query:    2 ILKAYNAQRLRIKAMLKEVPGRICFTSDLWTACTTDGYMSLTAHFIDKNWVLQKRLLNFTLMPSPHTGLCLSEKLLSLWTEWGVEKKVFSITLDNASANDACVTMLKSQLKIRKA-LLSNADYLHLRRSAQIIQLIARHGL 421
            I+  Y  ++ ++   LK+V  R   T D+WT+C    YM +T H+ID +W LQKR++ F  +   HTG  LS+   ++  +W +EKK+F+++LDNASAN+  V  +   L+   + L+ +  + H+R +  I+ L+A+ GL
Sbjct:  274 IMDLYLEEKEKLYGKLKDVQSRFSTTMDMWTSCQNKSYMCVTIHWIDDDWCLQKRIVGFFHVEGRHTGQRLSQTFTAIMVKWNIEKKLFALSLDNASANEVAVHDIIEDLQDTDSNLVCDGAFFHVRCACHILNLVAKDGL 414
The following BLAST results are available for this feature:
BLAST of DY260312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TRAC9_MAIZE8.077e-2235.46Putative AC9 transposase OS=Zea mays PE=4 SV=1[more]
TRA1_MAIZE8.077e-2235.46Putative AC transposase OS=Zea mays PE=2 SV=2[more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP12YB20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260312 ID=DY260312; Name=DY260312; organism=Citrus clementina; type=EST; length=1176bp
TATCCTAAAAGCTTATAACGCACAAAGACTTAGGATTAAAGCTATGTTAA
AGGAGGTTCCTGGTAGAATTTGTTTCACCTCTGATTTGTGGACTGCCTGC
ACTACTGATGGATACATGAGTCTCACTGCACATTTTATTGATAAAAACTG
GGTTTTACAAAAAAGATTGTTGAACTTCACCTTGATGCCATCTCCACACA
CTGGACTTTGTTTGTCTGAAAAGTTATTATCTTTATGGACAGAATGGGGT
GTTGAGAAAAAGGTGTTTTCTATAACATTGGACAATGCTTCAGCTAACGA
TGCATGTGTTACTATGTTGAAATCCCAGTTGAAAATTAGGAAAGCTTTAC
TGTCCAATGCTGATTATTTACACCTGCGTCGTAGTGCTCAAATTATCCAA
TTGATTGCCAGACACGGCCTACAAGCACAACACAGCAGAATTTTCTACAA
GTCGTGAAAGTGGGAAATCTTCCGAAACCATCCGCACGGTATAAAAAATA
AAATTTTCCAATGAAAAAAAACTACGACACTCGCCACTACACAGACACCG
CCACGCTTAAGCCACTACCAACGCGAAAACCCAAAGCATCTTTACACATC
CCATGCACCACCTATCCCCACAAAAATATTAATCACCCCCTACACCCCAC
CCAACATACCAACTAACCTACTCAACACCGATCACTCATAAACTAAATTC
ACCCCAAACCACCCTCTAGCAAGCAAACTACATACCCCATGAAATCTATC
TTCCATCTGACTCTTACCAGGCCCCCCCCTTTCCACCCATCCACCTACCA
TCTCCACAACCCCAACCGGCAGACAACCTTCACTAACCTCACACTACGAA
CTAACAAACCCTAAAACCACATTCAAACCCTCCACATCGTCTCACTCAAC
CATATCCACCACCCTCCCCACTCCCCCCCCTTCTAACTCCACTACCCACA
CTCACCACTTCCTTTAGTTATTATCCCAACAATATATACTCCATCACTCC
CCCACCCTCCACACTTACTCCTCCCCATCTCCACCCCTCTTTTAACACAA
CATCTTCTTACATCCCCCTAGACCCCGCAACCCATAACATCCTATCCACA
CCCCACGCAAACATTCTGTCACCTCAACTACCAGCAAGCCCTCAAATCTC
ACAATTCAACGAGTGCATAAAAAATA
back to top