DY260365

Overview
NameDY260365
Unique NameDY260365
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1202
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260365 vs. ExPASy Swiss-Prot
Match: DHAR1_ARATH (Glutathione S-transferase DHAR1, mitochondrial OS=Arabidopsis thaliana GN=DHAR1 PE=1 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 1.595e-89
Identity = 158/209 (75.60%), Postives = 179/209 (85.65%), Query Frame = 2
Query:    2 EICVIAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKAEKQYVIAGWVPKVN 628
            EICV AAVGAPD LGDCPFSQRALLTLEEK + YK HLIN+SDKPQWFL+ISP+GKVPV+K DDKWV DSDVIV I+EEKYP+P L  P EFASVGS IF +F  FLKSKD NDG+E ALL EL+AL+ HLK+H GPFIAGE+V+AVDLSLAPKLYHLQVAL HFK W+VPES  HVH Y K LF+L+SF+KTK E++YVI+GW PKVN
Sbjct:    4 EICVKAAVGAPDHLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPPLKTPAEFASVGSNIFGTFGTFLKSKDSNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVALGHFKSWSVPESFPHVHNYMKTLFSLDSFEKTKTEEKYVISGWAPKVN 212          
BLAST of DY260365 vs. ExPASy Swiss-Prot
Match: CLIC1_HUMAN (Chloride intracellular channel protein 1 OS=Homo sapiens GN=CLIC1 PE=1 SV=4)

HSP 1 Score: 89.7373 bits (221), Expect = 3.628e-17
Identity = 57/203 (28.08%), Postives = 100/203 (49.26%), Query Frame = 2
Query:   41 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 580
            +G+CPFSQR  + L  K V +    ++   + +   ++ P G++P + +  +   D++ I   +E      +YP+ +  NP E  + G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +T+PE+   VH Y    +A E F  T
Sbjct:   21 IGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNP-ESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFAST 222          
BLAST of DY260365 vs. ExPASy Swiss-Prot
Match: CLIC1_RAT (Chloride intracellular channel protein 1 OS=Rattus norvegicus GN=Clic1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.188e-17
Identity = 57/203 (28.08%), Postives = 99/203 (48.77%), Query Frame = 2
Query:   41 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 580
            +G+CPFSQR  + L  K V +    ++   + +   ++ P G++P + +  +   D++ I   +E      +YP+ +  NP    S G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +T+PE+   VH Y    +A E F  T
Sbjct:   21 IGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTS-GLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFAST 222          
BLAST of DY260365 vs. ExPASy Swiss-Prot
Match: CLIC1_MOUSE (Chloride intracellular channel protein 1 OS=Mus musculus GN=Clic1 PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 6.188e-17
Identity = 57/203 (28.08%), Postives = 99/203 (48.77%), Query Frame = 2
Query:   41 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 580
            +G+CPFSQR  + L  K V +    ++   + +   ++ P G++P + +  +   D++ I   +E      +YP+ +  NP    S G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +T+PE+   VH Y    +A E F  T
Sbjct:   21 IGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAMLCPPRYPKLAALNPESNTS-GLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFAST 222          
BLAST of DY260365 vs. ExPASy Swiss-Prot
Match: CLIC6_HUMAN (Chloride intracellular channel protein 6 OS=Homo sapiens GN=CLIC6 PE=2 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 3.071e-16
Identity = 55/202 (27.23%), Postives = 95/202 (47.03%), Query Frame = 2
Query:   41 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 580
            +G+CPFSQR  + L  K V +    +++  KP     ++P    P + FD +   D + I   +EEK   P      T  PE  S G+ +F  F  F+K+  KD N+  E+ LL+ L+ LD +L +                 G  F+ G+++T  D +L PKL+ +++  + ++ +  P  +  +  Y    +A + F  T
Sbjct:  484 IGNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNLAPGTNPPFMTFDGEVKTDVNKIEEFLEEKLAPPRYPKLGTQHPESNSAGNDVFAKFSAFIKNTKKDANEIHEKNLLKALRKLDNYLNSPLPDEIDAYSTEDVTVSGRKFLDGDELTLADCNLLPKLHIIKIVAKKYRDFEFPSEMTGIWRYLNNAYARDEFTNT 685          
BLAST of DY260365 vs. ExPASy Swiss-Prot
Match: CLIC1_BOVIN (Chloride intracellular channel protein 1 OS=Bos taurus GN=CLIC1 PE=2 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 3.071e-16
Identity = 55/203 (27.09%), Postives = 100/203 (49.26%), Query Frame = 2
Query:   41 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 580
            +G+CPFSQR  + L  K V +    ++   + +   ++ P G++P + +  +   D++ I   +E      +YP+ +  NP E  + G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +++P+    VH Y +  +A E F  T
Sbjct:   21 IGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNP-ESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPDEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFSIPDVFRGVHRYLRNAYAREEFAST 222          
BLAST of DY260365 vs. ExPASy Swiss-Prot
Match: CLIC6_RABIT (Chloride intracellular channel protein 6 OS=Oryctolagus cuniculus GN=CLIC6 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.239e-16
Identity = 56/202 (27.72%), Postives = 94/202 (46.53%), Query Frame = 2
Query:   41 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPS----LTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 580
            +G+CPFSQR  + L  K V +    +++  KP     ++P    P + FD     D + I   +EEK   P      T  PE  S G+ +F  F  F+K+  KD N+  E++LL+ LK LD +L +                 G  F+ G+ +T  D +L PKL+ +++  + ++ +  P  +  +  Y    +A + F  T
Sbjct:  417 IGNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNLAPGTNPPFMTFDGDVKTDVNKIEEFLEEKLAPPRYPKLATQHPESNSAGNDVFAKFSAFIKNTKKDANEIYEKSLLKALKKLDAYLNSPLPDEVDAYSTEDVAVSGRKFLDGDDLTLADCNLLPKLHIIKIVAKKYRDFEFPPEMTGIWRYLNNAYARDEFINT 618          
BLAST of DY260365 vs. ExPASy Swiss-Prot
Match: CLIC1_RABIT (Chloride intracellular channel protein 1 OS=Oryctolagus cuniculus GN=CLIC1 PE=2 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 6.842e-16
Identity = 57/203 (28.08%), Postives = 98/203 (48.28%), Query Frame = 2
Query:   41 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 580
            +G+CPFSQR  + L  K V +    ++   + +   ++ P G++P + +  +   D++ I   +E      +YP+ +  NP E  + G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  +  + +T+PE    VH Y    +A E F  T
Sbjct:   21 IGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVHKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNP-ESNTAGVDIFAKFSAYIKNSNPALNDNLEKGLLKALKILDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKNRGFTIPEVFRGVHRYLSNAYAREEFAST 222          
BLAST of DY260365 vs. ExPASy Swiss-Prot
Match: CLIC6_RAT (Chloride intracellular channel protein 6 OS=Rattus norvegicus GN=Clic6 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.167e-15
Identity = 56/202 (27.72%), Postives = 93/202 (46.04%), Query Frame = 2
Query:   41 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 580
            +G+CPFSQR  + L  K V +    +++  KP     ++P    P + FD +   D + I   +EEK   P      T  PE  S G+ +F  F  F+K+  KD ND  E+ LL  LK LD +L +                    F+ G+++T  D +L PKL+ +++  + ++ +  P  +  +  Y    +A + F  T
Sbjct:  392 IGNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNLAPGTNPPFMTFDGEVKTDVNKIEEFLEEKLVPPRYPKLGTQHPESNSAGNDVFAKFSAFIKNTKKDANDIYEKNLLRALKKLDSYLNSPLPDEIDAYSTEDVTVSQRKFLDGDELTLADCNLLPKLHIIKIVAKKYRGFEFPSEMTGIWRYLNNAYARDEFTNT 593          
BLAST of DY260365 vs. ExPASy Swiss-Prot
Match: CLIC6_MOUSE (Chloride intracellular channel protein 6 OS=Mus musculus GN=Clic6 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.991e-15
Identity = 55/202 (27.23%), Postives = 93/202 (46.04%), Query Frame = 2
Query:   41 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 580
            +G+CPFSQR  + L  K V +    +++  KP     ++P    P + FD +   D + I   +EEK   P      T  PE  S G+ +F  F  F+K+  KD N+  E+ LL  LK LD +L +                    F+ G+++T  D +L PKL+ +++  + ++ +  P  +  +  Y    +A + F  T
Sbjct:  376 IGNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNLAPGTNPPFMTFDGEVKTDVNKIEEFLEEKLVPPRYPKLGTQHPESNSAGNDVFAKFSAFIKNTKKDANEIYEKNLLRALKKLDSYLNSPLPDEIDADSSEDVTVSQRKFLDGDELTLADCNLLPKLHIIKIVAKKYRDFEFPSEMTGIWRYLNNAYARDEFTNT 577          
The following BLAST results are available for this feature:
BLAST of DY260365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
DHAR1_ARATH1.595e-8975.60Glutathione S-transferase DHAR1, mitochondrial OS=... [more]
CLIC1_HUMAN3.628e-1728.08Chloride intracellular channel protein 1 OS=Homo s... [more]
CLIC1_RAT6.188e-1728.08Chloride intracellular channel protein 1 OS=Rattus... [more]
CLIC1_MOUSE6.188e-1728.08Chloride intracellular channel protein 1 OS=Mus mu... [more]
CLIC6_HUMAN3.071e-1627.23Chloride intracellular channel protein 6 OS=Homo s... [more]
CLIC1_BOVIN3.071e-1627.09Chloride intracellular channel protein 1 OS=Bos ta... [more]
CLIC6_RABIT5.239e-1627.72Chloride intracellular channel protein 6 OS=Orycto... [more]
CLIC1_RABIT6.842e-1628.08Chloride intracellular channel protein 1 OS=Orycto... [more]
CLIC6_RAT1.167e-1527.72Chloride intracellular channel protein 6 OS=Rattus... [more]
CLIC6_MOUSE1.991e-1527.23Chloride intracellular channel protein 6 OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YE07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260365 ID=DY260365; Name=DY260365; organism=Citrus clementina; type=EST; length=1202bp
GGAGATTTGTGTGATAGCCGCTGTTGGCGCTCCTGATATTCTCGGGGACT
GCCCATTTTCCCAAAGAGCTTTGCTTACTTTGGAGGAAAAGAAAGTTCCA
TACAAGCGTCACCTCATCAATATCAGTGACAAGCCTCAATGGTTTTTGGA
GATAAGCCCAGAAGGGAAAGTACCTGTGGTAAAGTTTGATGACAAGTGGG
TGGCTGACTCTGATGTGATTGTTAGAATTATTGAGGAGAAGTATCCTGAG
CCTTCTCTTACTAATCCTCCTGAATTTGCCTCTGTTGGATCAAAGATATT
CCCATCTTTTGTCAATTTCTTGAAGAGCAAGGACCCAAATGATGGGACAG
AGCAAGCTTTGCTGGAGGAATTGAAAGCATTGGATGAGCATCTTAAGACT
CATGGAGGTCCATTCATTGCTGGAGAGAAGGTCACTGCTGTAGATTTGAG
CTTGGCACCAAAGCTGTACCACCTTCAGGTAGCTCTTGAACATTTCAAGC
AGTGGACTGTCCCTGAGAGCTTGGCTCATGTCCATGGGTACACGAAGAAG
CTTTTTGCTCTGGAATCCTTTCAGAAGACTAAGGCTGAAAAGCAATACGT
GATTGCAGGATGGGTGCCGAAGGTCAATGCATGAACCTAGTTCTAAGCTA
TGCGGTGTTTGAAATCTAACTAATGAAATGCCAGTAATGTATGTGTGAGA
CTTGGAGCATAATTTGAATGTTCCCTGGGGGTTTGTATCCTCCCACAAAG
GTGGCCACCATGATATTTGCCATTTGTTATAATGAAACCCCCCGGTTGAA
TGGCATTCACCCCTAATTCCCGGGATATCTCCACCGGTATTACATTGTTT
TAAAACCCTTGGCTTTTTCTCCAAAAAAAAAAACAAAAACCAAAAAACAC
CCCACTCTCCCGCCCACCGGTGGGCAGTTCACAAGACCACTCCCCCAATC
AATTGTCCCAACCAAACGCACCCAACACCACCCAAAAAAAACATACCAAC
TGCCACCCCTCGCTCATTCCTACTCAACGCATCAATGACTTGTCTCGCTC
CAATGATCACTCCTCACTACTCGATGATCTGACGTCTACACTCCCTGCCA
CTCGCCCATTCCTACCCACCGAATCGCATCCCTTAATCTCCTCTACCAAC
CACAACCTCCCTCAGCCACCCTCACCACCTGCACCCTCTCATTCCCATTT
AC
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