DY260368

Overview
NameDY260368
Unique NameDY260368
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1268
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260368 vs. ExPASy Swiss-Prot
Match: RMD5A_XENLA (Protein RMD5 homolog A OS=Xenopus laevis GN=rmnd5a PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 8.950e-14
Identity = 57/203 (28.08%), Postives = 100/203 (49.26%), Query Frame = 2
Query:  317 VLTELKRRLQDIAPLGQLEGTQKELNIALSKYTKILEKSFNPDISKAYRNIEFDTHT---VNQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKLTKNGSELQLKLQTYRLLKIHGRETKRNSQVCQ--TNLAPFASNHVNRIR-NSGLCPSGAKNLKPSPPPHYLPQTNW 907
            VLT+  +R++D     +L    K+++ ++S+  K ++K+F+ DIS    +  + T +   +++++  HF+RQG+ +V +    E   S   A+    F ++ +ILEA+K   L PAL+WA +N + L    S L+ KL     + +    T    +  Q   N  PFA NH   I+   G      + ++ SP  H L    W
Sbjct:   60 VLTQCCKRIKDTVQ--KLASDHKDIHSSVSRVGKAIDKNFDADISSVGIDGCWQTDSQRILSEVMVEHFFRQGMLDVAEELCQEASLS-IDASQKEPFVELNRILEALKVRVLRPALEWAVSNREMLMAQNSSLEFKLHRLYFISLLMGGTVNQQEALQYAKNFQPFAENHQKDIQVLMGSLVYLRQGIENSPYVHLLDANQW 259          
BLAST of DY260368 vs. ExPASy Swiss-Prot
Match: YB83_SCHPO (LisH domain-containing protein C29A3.03c OS=Schizosaccharomyces pombe GN=SPBC29A3.03c PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.994e-13
Identity = 53/201 (26.37%), Postives = 101/201 (50.25%), Query Frame = 2
Query:  254 VQEIEKALETVKSASHLDDKYVLTEL---KRRLQDIAPLGQLEGTQKELNIALSKYTKILEKSFNPDIS--KAYRNIEFDTHTVNQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKLTKNGSELQLKLQTYRLLK--IHGRETKRNSQVCQTNLAPFASNHVNRIRNS 835
            + E+E  L+  K +   D    + EL     + Q +     L+ T+K+ + +L+++ K LEK FN D+   K + + E     ++  ++ HF+RQG  E+   F  E    E S + L +F  +  I++ ++  +L+  ++WA+     L + GS L+  LQ YRL+   +  ++     + C+TN+A F   H+  I+ +
Sbjct:   22 LNELESILKDAKKSCLKDPTTSMKELVACSEKTQQV--FDDLKRTEKKFHTSLNRFGKTLEKKFNFDLEDIKLHSSFESKKREIDTALSLHFFRQGDVELAHLFCKEAGIEEPSES-LHVFTLLKSIVQGIRDKDLKLPIEWASQCRGYLERKGSSLEYTLQKYRLVSNYLTTKDIMAAIRYCRTNMAEFQKKHLADIQKT 219          
BLAST of DY260368 vs. ExPASy Swiss-Prot
Match: RMD5A_XENTR (Protein RMD5 homolog A OS=Xenopus tropicalis GN=rmnd5a PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.604e-13
Identity = 58/205 (28.29%), Postives = 101/205 (49.27%), Query Frame = 2
Query:  317 VLTELKRRLQDIAPLGQLEGTQKELNIALSKYTKILEKSFNPDISKA-----YRNIEFDTHTVNQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKLTKNGSELQLKLQT--YRLLKIHGRETKRNSQVCQTNLAPFASNHVNRIR-NSGLCPSGAKNLKPSPPPHYLPQTNW 907
            VLT+  +R++D     +L    K+++ ++S+  K ++K+F+ DIS       ++N       +++++  HF+RQG+ +V +    E   S   A+    F ++ +ILEA+K   L PAL+WA +N + L    S L+ KL    +  L + G   +R +     N  PFA NH   I+   G      + ++ SP  H L    W
Sbjct:   60 VLTQCCKRIKDTVQ--KLASDHKDIHSSVSRVGKAIDKNFDADISSVGIDGCWQNDS--QQILSEVMVEHFFRQGMLDVAEELCQEAGLS-IDASQKEPFVELNRILEALKVRVLRPALEWAVSNREMLMAQNSSLEFKLHRLYFISLLMGGTVNQREALQYAKNFQPFAENHQKDIQVLMGSLVYLRQGIENSPYVHLLDANQW 259          
BLAST of DY260368 vs. ExPASy Swiss-Prot
Match: RMD5A_MOUSE (Protein RMD5 homolog A OS=Mus musculus GN=Rmnd5a PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.401e-13
Identity = 57/203 (28.08%), Postives = 101/203 (49.75%), Query Frame = 2
Query:  317 VLTELKRRLQDIAPLGQLEGTQKELNIALSKYTKILEKSFNPDISKAYRNIEFDTHT---VNQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKLTKNGSELQLKLQT--YRLLKIHGRETKRNSQVCQTNLAPFASNHVNRIR-NSGLCPSGAKNLKPSPPPHYLPQTNW 907
            VLT+  +R++D     +L    K+++ ++S+  K ++K+F+ DIS    +  +   +   +N+++  HF+RQG+ +V +    E+  S    +    F ++ +ILEA+K   L PAL+WA +N + L    S L+ KL    +  L + G   +R +     N  PFA NH   I+   G      + ++ SP  H L    W
Sbjct:   60 VLTQCCKRIKDTVQ--KLASDHKDIHSSVSRVGKAIDKNFDSDISSVGIDGCWQADSQRLLNEVMVEHFFRQGMLDVAEELCQESGLS-VDPSQKEPFVELNRILEALKVRVLRPALEWAVSNREMLIAQNSSLEFKLHRLYFISLLMGGTTNQREALQYAKNFQPFALNHQKDIQVLMGSLVYLRQGIENSPYVHLLDANQW 259          
BLAST of DY260368 vs. ExPASy Swiss-Prot
Match: RMD5A_HUMAN (Protein RMD5 homolog A OS=Homo sapiens GN=RMND5A PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.401e-13
Identity = 57/203 (28.08%), Postives = 101/203 (49.75%), Query Frame = 2
Query:  317 VLTELKRRLQDIAPLGQLEGTQKELNIALSKYTKILEKSFNPDISKAYRNIEFDTHT---VNQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKLTKNGSELQLKLQT--YRLLKIHGRETKRNSQVCQTNLAPFASNHVNRIR-NSGLCPSGAKNLKPSPPPHYLPQTNW 907
            VLT+  +R++D     +L    K+++ ++S+  K ++K+F+ DIS    +  +   +   +N+++  HF+RQG+ +V +    E+  S    +    F ++ +ILEA+K   L PAL+WA +N + L    S L+ KL    +  L + G   +R +     N  PFA NH   I+   G      + ++ SP  H L    W
Sbjct:   60 VLTQCCKRIKDTVQ--KLASDHKDIHSSVSRVGKAIDKNFDSDISSVGIDGCWQADSQRLLNEVMVEHFFRQGMLDVAEELCQESGLS-VDPSQKEPFVELNRILEALKVRVLRPALEWAVSNREMLIAQNSSLEFKLHRLYFISLLMGGTTNQREALQYAKNFQPFALNHQKDIQVLMGSLVYLRQGIENSPYVHLLDANQW 259          
The following BLAST results are available for this feature:
BLAST of DY260368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RMD5A_XENLA8.950e-1428.08Protein RMD5 homolog A OS=Xenopus laevis GN=rmnd5a... [more]
YB83_SCHPO1.994e-1326.37LisH domain-containing protein C29A3.03c OS=Schizo... [more]
RMD5A_XENTR2.604e-1328.29Protein RMD5 homolog A OS=Xenopus tropicalis GN=rm... [more]
RMD5A_MOUSE3.401e-1328.08Protein RMD5 homolog A OS=Mus musculus GN=Rmnd5a P... [more]
RMD5A_HUMAN3.401e-1328.08Protein RMD5 homolog A OS=Homo sapiens GN=RMND5A P... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP12YE11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260368 ID=DY260368; Name=DY260368; organism=Citrus clementina; type=EST; length=1268bp
CGAAATCCCTCTGTCTTTCTCGCTTTGCTTGCTTCTTCCTCAACCGAGAC
CAAGAGGCGTTTTACATTTCCACTATTCCTCTGGCTCTACCAAGGCTTCT
CTAATCTCTAAATTTGCATGTTGATTCCTTCTAATAACTACGGATACGGC
TTAATTCAAAATGGAGCTGAATGACATTAAGGATGCATTTGATCGTGTTG
CGAAGAAGCAAAAGCTATCTTGTTCTAAAACCCAGGAAGTGATCGACCTA
ATTGTCCAAGAAATTGAAAAGGCACTGGAAACAGTGAAGTCAGCCTCCCA
TCTTGATGACAAATATGTCCTCACCGAACTCAAGAGAAGGTTGCAAGATA
TTGCACCCCTCGGTCAACTGGAAGGCACACAGAAGGAACTGAATATAGCG
CTGAGCAAGTACACAAAAATTCTGGAGAAATCTTTTAATCCAGATATATC
CAAGGCTTACAGAAACATTGAATTTGACACACACACAGTTAACCAAATAA
TTGCTAGCCATTTCTACAGGCAGGGCCTTTTTGAAGTCGGTGACTGCTTC
ATAAGTGAGACTAAGGAATCAGAATGTTCTGCTGCTATTTTGTCTATTTT
CGAGGACATGTATCAAATACTTGAAGCTATGAAGAGTGGGAACCTAGAGC
CTGCACTGAAATGGGCTGCTGCCAACTCTGACAAGCTCACAAAAAACGGA
TCTGAACTTCAGCTGAAACTCCAAACCTACCGTTTGTTGAAAATACACGG
AAGGGAAACCAAAAGAAACTCCCAAGTATGCCAAACCAATCTTGCTCCTT
TTGCCTCAAACCATGTAAACAGAATCAGAAACTCAGGGCTGTGCCCCTCT
GGGGCAAAAAACCTGAAACCCTCCCCACCCCCTCATTATTTACCCCAAAC
CAATTGGGTTTACTGTCACCAAAAAACCCACCTCCGCAATTCTGCCACTC
GCGTGGACAGCCCCAAGCAAACCCCCTTAGCGGGTGAACAAAAACCCCCC
AAGGGTTCTAACCTCTCCCCCCCCCCCCCTCTAAATTTTCCTAACCCACC
AGTTCCTGCGAACACAAAAGCTCCGATCCTCCACCCATCAATTTCGATTC
TCTTGCTTTCCACTACTCTACTCCACACACCTACAAAACCTACCCCCCCC
ATATCTCACACCTTTACACCCCGACTCCCGCTAACCGCAACAACACCTCA
CATCCCAGTCACCCCCTGACTACAACCGTCCTTCTCCTAGCGTTCCCTCT
CTCTTTACTCCCTCTTAT
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