DY260368
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY260368 vs. ExPASy Swiss-Prot
Match: RMD5A_XENLA (Protein RMD5 homolog A OS=Xenopus laevis GN=rmnd5a PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 8.950e-14 Identity = 57/203 (28.08%), Postives = 100/203 (49.26%), Query Frame = 2 Query: 317 VLTELKRRLQDIAPLGQLEGTQKELNIALSKYTKILEKSFNPDISKAYRNIEFDTHT---VNQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKLTKNGSELQLKLQTYRLLKIHGRETKRNSQVCQ--TNLAPFASNHVNRIR-NSGLCPSGAKNLKPSPPPHYLPQTNW 907 VLT+ +R++D +L K+++ ++S+ K ++K+F+ DIS + + T + +++++ HF+RQG+ +V + E S A+ F ++ +ILEA+K L PAL+WA +N + L S L+ KL + + T + Q N PFA NH I+ G + ++ SP H L W Sbjct: 60 VLTQCCKRIKDTVQ--KLASDHKDIHSSVSRVGKAIDKNFDADISSVGIDGCWQTDSQRILSEVMVEHFFRQGMLDVAEELCQEASLS-IDASQKEPFVELNRILEALKVRVLRPALEWAVSNREMLMAQNSSLEFKLHRLYFISLLMGGTVNQQEALQYAKNFQPFAENHQKDIQVLMGSLVYLRQGIENSPYVHLLDANQW 259
BLAST of DY260368 vs. ExPASy Swiss-Prot
Match: YB83_SCHPO (LisH domain-containing protein C29A3.03c OS=Schizosaccharomyces pombe GN=SPBC29A3.03c PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.994e-13 Identity = 53/201 (26.37%), Postives = 101/201 (50.25%), Query Frame = 2 Query: 254 VQEIEKALETVKSASHLDDKYVLTEL---KRRLQDIAPLGQLEGTQKELNIALSKYTKILEKSFNPDIS--KAYRNIEFDTHTVNQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKLTKNGSELQLKLQTYRLLK--IHGRETKRNSQVCQTNLAPFASNHVNRIRNS 835 + E+E L+ K + D + EL + Q + L+ T+K+ + +L+++ K LEK FN D+ K + + E ++ ++ HF+RQG E+ F E E S + L +F + I++ ++ +L+ ++WA+ L + GS L+ LQ YRL+ + ++ + C+TN+A F H+ I+ + Sbjct: 22 LNELESILKDAKKSCLKDPTTSMKELVACSEKTQQV--FDDLKRTEKKFHTSLNRFGKTLEKKFNFDLEDIKLHSSFESKKREIDTALSLHFFRQGDVELAHLFCKEAGIEEPSES-LHVFTLLKSIVQGIRDKDLKLPIEWASQCRGYLERKGSSLEYTLQKYRLVSNYLTTKDIMAAIRYCRTNMAEFQKKHLADIQKT 219
BLAST of DY260368 vs. ExPASy Swiss-Prot
Match: RMD5A_XENTR (Protein RMD5 homolog A OS=Xenopus tropicalis GN=rmnd5a PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 2.604e-13 Identity = 58/205 (28.29%), Postives = 101/205 (49.27%), Query Frame = 2 Query: 317 VLTELKRRLQDIAPLGQLEGTQKELNIALSKYTKILEKSFNPDISKA-----YRNIEFDTHTVNQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKLTKNGSELQLKLQT--YRLLKIHGRETKRNSQVCQTNLAPFASNHVNRIR-NSGLCPSGAKNLKPSPPPHYLPQTNW 907 VLT+ +R++D +L K+++ ++S+ K ++K+F+ DIS ++N +++++ HF+RQG+ +V + E S A+ F ++ +ILEA+K L PAL+WA +N + L S L+ KL + L + G +R + N PFA NH I+ G + ++ SP H L W Sbjct: 60 VLTQCCKRIKDTVQ--KLASDHKDIHSSVSRVGKAIDKNFDADISSVGIDGCWQNDS--QQILSEVMVEHFFRQGMLDVAEELCQEAGLS-IDASQKEPFVELNRILEALKVRVLRPALEWAVSNREMLMAQNSSLEFKLHRLYFISLLMGGTVNQREALQYAKNFQPFAENHQKDIQVLMGSLVYLRQGIENSPYVHLLDANQW 259
BLAST of DY260368 vs. ExPASy Swiss-Prot
Match: RMD5A_MOUSE (Protein RMD5 homolog A OS=Mus musculus GN=Rmnd5a PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 3.401e-13 Identity = 57/203 (28.08%), Postives = 101/203 (49.75%), Query Frame = 2 Query: 317 VLTELKRRLQDIAPLGQLEGTQKELNIALSKYTKILEKSFNPDISKAYRNIEFDTHT---VNQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKLTKNGSELQLKLQT--YRLLKIHGRETKRNSQVCQTNLAPFASNHVNRIR-NSGLCPSGAKNLKPSPPPHYLPQTNW 907 VLT+ +R++D +L K+++ ++S+ K ++K+F+ DIS + + + +N+++ HF+RQG+ +V + E+ S + F ++ +ILEA+K L PAL+WA +N + L S L+ KL + L + G +R + N PFA NH I+ G + ++ SP H L W Sbjct: 60 VLTQCCKRIKDTVQ--KLASDHKDIHSSVSRVGKAIDKNFDSDISSVGIDGCWQADSQRLLNEVMVEHFFRQGMLDVAEELCQESGLS-VDPSQKEPFVELNRILEALKVRVLRPALEWAVSNREMLIAQNSSLEFKLHRLYFISLLMGGTTNQREALQYAKNFQPFALNHQKDIQVLMGSLVYLRQGIENSPYVHLLDANQW 259
BLAST of DY260368 vs. ExPASy Swiss-Prot
Match: RMD5A_HUMAN (Protein RMD5 homolog A OS=Homo sapiens GN=RMND5A PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 3.401e-13 Identity = 57/203 (28.08%), Postives = 101/203 (49.75%), Query Frame = 2 Query: 317 VLTELKRRLQDIAPLGQLEGTQKELNIALSKYTKILEKSFNPDISKAYRNIEFDTHT---VNQIIASHFYRQGLFEVGDCFISETKESECSAAILSIFEDMYQILEAMKSGNLEPALKWAAANSDKLTKNGSELQLKLQT--YRLLKIHGRETKRNSQVCQTNLAPFASNHVNRIR-NSGLCPSGAKNLKPSPPPHYLPQTNW 907 VLT+ +R++D +L K+++ ++S+ K ++K+F+ DIS + + + +N+++ HF+RQG+ +V + E+ S + F ++ +ILEA+K L PAL+WA +N + L S L+ KL + L + G +R + N PFA NH I+ G + ++ SP H L W Sbjct: 60 VLTQCCKRIKDTVQ--KLASDHKDIHSSVSRVGKAIDKNFDSDISSVGIDGCWQADSQRLLNEVMVEHFFRQGMLDVAEELCQESGLS-VDPSQKEPFVELNRILEALKVRVLRPALEWAVSNREMLIAQNSSLEFKLHRLYFISLLMGGTTNQREALQYAKNFQPFALNHQKDIQVLMGSLVYLRQGIENSPYVHLLDANQW 259 The following BLAST results are available for this feature:
BLAST of DY260368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DY260368 ID=DY260368; Name=DY260368; organism=Citrus clementina; type=EST; length=1268bpback to top |