DY260394

Overview
NameDY260394
Unique NameDY260394
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1237
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260394_ssr1 microsatellite DY260394_ssr1:1..16. BLAST: Citrus ESTs to Prunus persica proteins V1
DY260394_ssr33 microsatellite DY260394_ssr33:33..48. BLAST: Citrus ESTs to Prunus persica proteins V1
DY260394_ssr370 microsatellite DY260394_ssr370:370..381. BLAST: Citrus ESTs to Prunus persica proteins V1
DY260394_ssr1214 microsatellite DY260394_ssr1214:1214..1225. BLAST: Citrus ESTs to Prunus persica proteins V1
DY260394_ssr1130 microsatellite DY260394_ssr1130:1130..1141. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1511 contig Ccv1_Contig1511:1..1237. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY260394 vs. ExPASy Swiss-Prot
Match: C3H46_ARATH (Zinc finger CCCH domain-containing protein 46 OS=Arabidopsis thaliana GN=At3g51950 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.928e-13
Identity = 35/62 (56.45%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:  136 MDEFDATSILFNRIKSIDPENASKIMGYILIQDVKERDLLRLASGPETLMQALIFRAKSQLG 321
            MD ++AT I+ +RI+S+DPENASKIMG +L+QD  E++++RLA GPETL+ ++I +AK +LG
Sbjct:    1 MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKELG 62
[Close]
BLAST of DY260394 vs. ExPASy Swiss-Prot
Match: C3H53_ORYSJ (Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa subsp. japonica GN=Os07g0682400 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.202e-12
Identity = 29/62 (46.77%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:  136 MDEFDATSILFNRIKSIDPENASKIMGYILIQDVKERDLLRLASGPETLMQALIFRAKSQLG 321
            MD ++AT ++F+RI+++DP++A+KIMG++LIQD  E++++RLA GPE L+  ++ +A+ +LG
Sbjct:    1 MDAYEATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKARKELG 62
The following BLAST results are available for this feature:
BLAST of DY260394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
C3H46_ARATH1.928e-1356.45Zinc finger CCCH domain-containing protein 46 OS=A... [more]
C3H53_ORYSJ6.202e-1246.77Zinc finger CCCH domain-containing protein 53 OS=O... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP12YF19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260394 ID=DY260394; Name=DY260394; organism=Citrus clementina; type=EST; length=1237bp
CTCTCTCTCTCTCTCTTCTCTCTCTGACTCTTTCTCTCTCTCTCTCTCCA
TCTTAACTCTTTACAACTCAAATAACCAGAAAACAAAGCACCCACCCACT
AAAACTAAACCCCCCCAAAAAAAAAGTGGAAAAGAATGGATGAGTTTGAT
GCAACAAGCATCCTGTTCAACAGAATCAAAAGCATAGACCCAGAAAACGC
TTCAAAAATCATGGGTTACATTCTCATACAGGACGTTAAAGAAAGAGATT
TGTTGCGTTTAGCCTCTGGCCCAGAAACCCTTATGCAAGCTTTGATTTTT
AGAGCCAAATCCCAATTGGGACTTTCGTCAAACACCTTTTCTACTAGTAC
TCCTACTTCACCCTCACTAAACAACAACAACCCTTTCTCCAGACTGAATA
ATTGCAGCAATAACGCAAACAACAACCATGTTAGCACACACCCATTTGCT
CAAATGTCCCCTAGGGTTGTTACTAACAATGGGTATCTCGACTTCCGAAA
AAACTCACCTTTATCTAACCCCAAGCCAAGTCCTTTTCTTTCTTTTGAAA
ATATACCTTCCCGGGTCTTGTTTTACTGCCTCCAATTGCAAAAAATGATG
TTGGTGTTGTTGATAATGGTGATAACACTATTGCTAATGATTAACTCCAA
GAACCCCCCTTCAATTACTAATTCTCCTTTTCCCCACCACCCCCCCAAAA
ATCACGACCTTACTCATCCACCACCCCACTTAACCCTTAGTCCCCCAATT
TAAACCACGAATCGCAATTTCATTTCACCCCAACCCCAATCTCCCCCACC
CCAATACTCCAATATTCCACAAACAAAAACACCCATCTCAACCTTAACAA
ACCACCTAATCCTTCCTTTCTCCAAAACCACTTCCTCCACAAACCACACA
AACTCCAAATCCACATCCCCATATTCCCCCACCACTCACACCCAATCCCT
TTACCACCCTCATATTTCCTACACCCACACCCATATACTCTCCCCCCCCT
CTCACCACCCTCTCCACTTAAACAATCCAACCATCCACCCTACCATCTCA
CCACTTTCCTCCTATAACTTTCTCCCCCATCCACCCAACATCCCCTACCA
CTTCACCCCTCTCCTTTATACCTACCTCCACCAACCAACCAATCCACTCA
CACTACACCCCTCCTCCCCCACCACACCTACCCACACCACCCCCCTTCCA
CACCCCAACACCTCCACCACCACCACTCCCCACCCCC
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