DY260400

Overview
NameDY260400
Unique NameDY260400
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1164
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1514 contig Ccv1_Contig1514:1..1164. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260400 vs. ExPASy Swiss-Prot
Match: NOVA1_RAT (RNA-binding protein Nova-1 (Fragment) OS=Rattus norvegicus GN=Nova1 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 3.817e-24
Identity = 66/210 (31.43%), Postives = 118/210 (56.19%), Query Frame = 3
Query:  150 PDVHGKRSTAPVKSLSSDPT----EKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTK-----------TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEPMRALELILLKLSEDTLYSQTMTVPY 734
            PD   +   AP ++ S+  T    +   +++ L+ +  AG++IGKGG TI   Q ++GA I+LS+S +F+PGTT+R+ +I GTI+ +      + +K+        + + V               ++++IVPNS+ G IIGK GAT+K+ M+ S A +++S+       L +R+VT++G  ++  +A+ELI+ K+ ED      + + Y
Sbjct:   22 PDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDG-INLQERVVTVSGEPEQNRKAVELIIQKIQEDPQSGSCLNISY 230          
BLAST of DY260400 vs. ExPASy Swiss-Prot
Match: NOVA1_MACFA (RNA-binding protein Nova-1 OS=Macaca fascicularis GN=NOVA1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 4.985e-24
Identity = 65/210 (30.95%), Postives = 118/210 (56.19%), Query Frame = 3
Query:  150 PDVHGKRSTAPVKSLSSDPT----EKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTK-----------TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEPMRALELILLKLSEDTLYSQTMTVPY 734
            PD   +   AP ++ S+  T    +   +++ L+ +  AG++IGKGG TI   Q ++GA I+LS+S +F+PGTT+R+ +I GT++ +      + +K+        + + V               ++++IVPNS+ G IIGK GAT+K+ M+ S A +++S+       L +R+VT++G  ++  +A+ELI+ K+ ED      + + Y
Sbjct:   23 PDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDG-INLQERVVTVSGEPEQNRKAVELIIQKIQEDPQSGSCLNISY 231          
BLAST of DY260400 vs. ExPASy Swiss-Prot
Match: NOVA2_HUMAN (RNA-binding protein Nova-2 OS=Homo sapiens GN=NOVA2 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 7.198e-23
Identity = 65/192 (33.85%), Postives = 109/192 (56.77%), Query Frame = 3
Query:  195 SSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDV------------GTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEPMRALELILLKLSEDTLYSQTMTVPY 734
            S+   E   +++ L+ +  AG++IGKGG TI   Q ++GA I+LS+S +F+PGTT+R+ ++ GT  E L AV   I + + E+       +V                + +LIVPNS+ G IIGK GAT+K+ M+ S A +++S+       L +R+VT++G  ++  +A+  I+ K+ ED   S  + + Y
Sbjct:   25 SNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTA-EALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEG-INLQERVVTVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNISY 214          
BLAST of DY260400 vs. ExPASy Swiss-Prot
Match: PCBP1_RABIT (Poly(rC)-binding protein 1 OS=Oryctolagus cuniculus GN=PCBP1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.230e-15
Identity = 51/177 (28.81%), Postives = 97/177 (54.80%), Query Frame = 3
Query:  225 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKIS--RLDHSYYGLNDRLVTLTG---TLDEPMRALELILLKLSEDTLYSQTMTVPY 734
            IR L+     G++IGK G ++   + +SGARI +S  +       +RII ++G  + I +A  ++IDKL  ++++        ++    LRL+VP + CGS+IGK G  IK   + + A ++++   L +S     +R +T+ G   ++ E ++ + L++L+    +   + MT+PY
Sbjct:   16 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN-----CPERIITLTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNS----TERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPY 183          
BLAST of DY260400 vs. ExPASy Swiss-Prot
Match: PCBP1_MOUSE (Poly(rC)-binding protein 1 OS=Mus musculus GN=Pcbp1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.230e-15
Identity = 51/177 (28.81%), Postives = 97/177 (54.80%), Query Frame = 3
Query:  225 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKIS--RLDHSYYGLNDRLVTLTG---TLDEPMRALELILLKLSEDTLYSQTMTVPY 734
            IR L+     G++IGK G ++   + +SGARI +S  +       +RII ++G  + I +A  ++IDKL  ++++        ++    LRL+VP + CGS+IGK G  IK   + + A ++++   L +S     +R +T+ G   ++ E ++ + L++L+    +   + MT+PY
Sbjct:   16 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN-----CPERIITLTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNS----TERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPY 183          
BLAST of DY260400 vs. ExPASy Swiss-Prot
Match: PCBP1_HUMAN (Poly(rC)-binding protein 1 OS=Homo sapiens GN=PCBP1 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 4.230e-15
Identity = 51/177 (28.81%), Postives = 97/177 (54.80%), Query Frame = 3
Query:  225 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKIS--RLDHSYYGLNDRLVTLTG---TLDEPMRALELILLKLSEDTLYSQTMTVPY 734
            IR L+     G++IGK G ++   + +SGARI +S  +       +RII ++G  + I +A  ++IDKL  ++++        ++    LRL+VP + CGS+IGK G  IK   + + A ++++   L +S     +R +T+ G   ++ E ++ + L++L+    +   + MT+PY
Sbjct:   16 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN-----CPERIITLTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNS----TERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPY 183          
BLAST of DY260400 vs. ExPASy Swiss-Prot
Match: PCBP1_BOVIN (Poly(rC)-binding protein 1 OS=Bos taurus GN=PCBP1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.230e-15
Identity = 51/177 (28.81%), Postives = 97/177 (54.80%), Query Frame = 3
Query:  225 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKIS--RLDHSYYGLNDRLVTLTG---TLDEPMRALELILLKLSEDTLYSQTMTVPY 734
            IR L+     G++IGK G ++   + +SGARI +S  +       +RII ++G  + I +A  ++IDKL  ++++        ++    LRL+VP + CGS+IGK G  IK   + + A ++++   L +S     +R +T+ G   ++ E ++ + L++L+    +   + MT+PY
Sbjct:   16 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN-----CPERIITLTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNS----TERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPY 183          
BLAST of DY260400 vs. ExPASy Swiss-Prot
Match: PCBP3_MOUSE (Poly(rC)-binding protein 3 OS=Mus musculus GN=Pcbp3 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.361e-13
Identity = 53/174 (30.46%), Postives = 91/174 (52.30%), Query Frame = 3
Query:  225 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKIS--RLDHSYYGLNDRLVTLTGTLDEPMRALELILLKLSEDTLYSQTMTVPY 734
            IR L+     G++IGK G T+   + +SGARI +S  +       +RI+ I+G  D I +A  ++  K   ++          +K    LRL+VP S CGS+IGK G+ IK   + + A ++++   L +S     +R VT++GT D  ++ ++ I + + E     +  T+PY
Sbjct:   16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN-----CPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNS----TERAVTISGTPDAIIQCVKQICVVMLESP--PKGATIPY 178          
BLAST of DY260400 vs. ExPASy Swiss-Prot
Match: PCBP3_HUMAN (Poly(rC)-binding protein 3 OS=Homo sapiens GN=PCBP3 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.361e-13
Identity = 53/174 (30.46%), Postives = 91/174 (52.30%), Query Frame = 3
Query:  225 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKIS--RLDHSYYGLNDRLVTLTGTLDEPMRALELILLKLSEDTLYSQTMTVPY 734
            IR L+     G++IGK G T+   + +SGARI +S  +       +RI+ I+G  D I +A  ++  K   ++          +K    LRL+VP S CGS+IGK G+ IK   + + A ++++   L +S     +R VT++GT D  ++ ++ I + + E     +  T+PY
Sbjct:   16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN-----CPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNS----TERAVTISGTPDAIIQCVKQICVVMLESP--PKGATIPY 178          
BLAST of DY260400 vs. ExPASy Swiss-Prot
Match: PCBP2_HUMAN (Poly(rC)-binding protein 2 OS=Homo sapiens GN=PCBP2 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.777e-13
Identity = 51/176 (28.98%), Postives = 92/176 (52.27%), Query Frame = 3
Query:  225 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKIS--RLDHSYYGLNDRLVTLTGTLDEPMRALELILLKLSEDTLYS--QTMTVPY 734
            IR L+     G++IGK G ++   + +SGARI +S  +       +RII ++G  + I +A  ++IDKL  ++ +        ++    LRL+VP S CGS+IGK G  IK   + + A ++++   L +S     +R +T+ G     +  ++ I + + E    S  + +T+PY
Sbjct:   16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN-----CPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNS----TERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPY 182          
The following BLAST results are available for this feature:
BLAST of DY260400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
NOVA1_RAT3.817e-2431.43RNA-binding protein Nova-1 (Fragment) OS=Rattus no... [more]
NOVA1_MACFA4.985e-2430.95RNA-binding protein Nova-1 OS=Macaca fascicularis ... [more]
NOVA2_HUMAN7.198e-2333.85RNA-binding protein Nova-2 OS=Homo sapiens GN=NOVA... [more]
PCBP1_RABIT4.230e-1528.81Poly(rC)-binding protein 1 OS=Oryctolagus cuniculu... [more]
PCBP1_MOUSE4.230e-1528.81Poly(rC)-binding protein 1 OS=Mus musculus GN=Pcbp... [more]
PCBP1_HUMAN4.230e-1528.81Poly(rC)-binding protein 1 OS=Homo sapiens GN=PCBP... [more]
PCBP1_BOVIN4.230e-1528.81Poly(rC)-binding protein 1 OS=Bos taurus GN=PCBP1 ... [more]
PCBP3_MOUSE1.361e-1330.46Poly(rC)-binding protein 3 OS=Mus musculus GN=Pcbp... [more]
PCBP3_HUMAN1.361e-1330.46Poly(rC)-binding protein 3 OS=Homo sapiens GN=PCBP... [more]
PCBP2_HUMAN1.777e-1328.98Poly(rC)-binding protein 2 OS=Homo sapiens GN=PCBP... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YG01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260400 ID=DY260400; Name=DY260400; organism=Citrus clementina; type=EST; length=1164bp
CTTTTTTGTGTGTTTGCTTTATTAATGTAATTAATTTATATTTGTTTTTG
ATAATGTGAGTGTGCGCGTTTATCTTTTGTGATTTCTTTAGTTTGAAGGA
GAAGAGGAGCAGCCAAATGGAGACGAACGAGTCCTCTTACGTCCCGTCGC
CGGATGTGCATGGAAAGCGATCTACGGCGCCGGTTAAGTCGCTGTCTTCA
GATCCTACCGAGAAGCCCACATACATTAGGTTTCTTGTCTCGAATCCCTT
AGCTGGTGCTGTCATTGGAAAGGGTGGCTCCACAATTAATGATTTTCAGT
CACAGTCTGGAGCAAGAATCCAGTTGTCTCGCAGTCATGAATTTTTTCCA
GGAACAACTGATAGGATCATTATGATTTCTGGAACAATTGATGAAATTCT
CAGGGCCGTGGATCTCGTTATTGATAAGTTGCTGACTGAGCTTCATGCTG
AAGATCAGGCTGATGATGTTGGGACAAAGACAAAGCTGAGACTAATTGTT
CCTAATAGCTCCTGTGGAAGCATAATTGGGAAGGCAGGGGCCACTATAAA
GTCATTTATGGATGACTCCCAAGCTGTTATTAAAATATCTCGTCTGGATC
ATAGTTATTATGGGTTGAATGATAGGCTAGTGACCCTGACAGGAACTCTT
GATGAGCCGATGAGGGCTCTTGAATTGATTCTGTTAAAGCTATCGGAAGA
TACTCTTTACTCCCAGACTATGACAGTTCCCTATACCTATGCTGGTGTTT
TCCTTCCCGGTTTTCCCCGGCTGCCCTATGGGGGCGTGCCCCCCCCTCGT
TCCCCCATGCCCCCCCAAAACACCACCCCCCTAAGGACCCCATATGGGGT
GGAAAAAATTTTCCAAATAACCGGGAGGATCCCAACAAACCCCCTCGAAC
ATTTGTGGGGGCCGAAGAACCCTAATGGGTTTGGTTTTGGGTCCGGGGGG
GAAAGAACACAAAGGAAAATTATCTCAAAAAAATGGGGGGCCCAGGATAA
AAGGTTACCAAAAAAGGGGGGAATTTCCCTCCCCCGGAAACCCCCCCAAA
AAGGAAAGGTCCCAATCCCCCGGGGCCCCCCCCCCCCACACACCCCTCCC
CACCACCCCACAACCCCCGAGAAACAACTCGAGAAAAAGGGGGGATCATT
AACATTCCCCTCCC
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