DY260400
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY260400 vs. ExPASy Swiss-Prot
Match: NOVA1_RAT (RNA-binding protein Nova-1 (Fragment) OS=Rattus norvegicus GN=Nova1 PE=2 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 3.817e-24 Identity = 66/210 (31.43%), Postives = 118/210 (56.19%), Query Frame = 3 Query: 150 PDVHGKRSTAPVKSLSSDPT----EKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTK-----------TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEPMRALELILLKLSEDTLYSQTMTVPY 734 PD + AP ++ S+ T + +++ L+ + AG++IGKGG TI Q ++GA I+LS+S +F+PGTT+R+ +I GTI+ + + +K+ + + V ++++IVPNS+ G IIGK GAT+K+ M+ S A +++S+ L +R+VT++G ++ +A+ELI+ K+ ED + + Y Sbjct: 22 PDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDG-INLQERVVTVSGEPEQNRKAVELIIQKIQEDPQSGSCLNISY 230
BLAST of DY260400 vs. ExPASy Swiss-Prot
Match: NOVA1_MACFA (RNA-binding protein Nova-1 OS=Macaca fascicularis GN=NOVA1 PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 4.985e-24 Identity = 65/210 (30.95%), Postives = 118/210 (56.19%), Query Frame = 3 Query: 150 PDVHGKRSTAPVKSLSSDPT----EKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTK-----------TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEPMRALELILLKLSEDTLYSQTMTVPY 734 PD + AP ++ S+ T + +++ L+ + AG++IGKGG TI Q ++GA I+LS+S +F+PGTT+R+ +I GT++ + + +K+ + + V ++++IVPNS+ G IIGK GAT+K+ M+ S A +++S+ L +R+VT++G ++ +A+ELI+ K+ ED + + Y Sbjct: 23 PDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDG-INLQERVVTVSGEPEQNRKAVELIIQKIQEDPQSGSCLNISY 231
BLAST of DY260400 vs. ExPASy Swiss-Prot
Match: NOVA2_HUMAN (RNA-binding protein Nova-2 OS=Homo sapiens GN=NOVA2 PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 7.198e-23 Identity = 65/192 (33.85%), Postives = 109/192 (56.77%), Query Frame = 3 Query: 195 SSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDV------------GTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEPMRALELILLKLSEDTLYSQTMTVPY 734 S+ E +++ L+ + AG++IGKGG TI Q ++GA I+LS+S +F+PGTT+R+ ++ GT E L AV I + + E+ +V + +LIVPNS+ G IIGK GAT+K+ M+ S A +++S+ L +R+VT++G ++ +A+ I+ K+ ED S + + Y Sbjct: 25 SNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTA-EALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEG-INLQERVVTVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNISY 214
BLAST of DY260400 vs. ExPASy Swiss-Prot
Match: PCBP1_RABIT (Poly(rC)-binding protein 1 OS=Oryctolagus cuniculus GN=PCBP1 PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 4.230e-15 Identity = 51/177 (28.81%), Postives = 97/177 (54.80%), Query Frame = 3 Query: 225 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKIS--RLDHSYYGLNDRLVTLTG---TLDEPMRALELILLKLSEDTLYSQTMTVPY 734 IR L+ G++IGK G ++ + +SGARI +S + +RII ++G + I +A ++IDKL ++++ ++ LRL+VP + CGS+IGK G IK + + A ++++ L +S +R +T+ G ++ E ++ + L++L+ + + MT+PY Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN-----CPERIITLTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNS----TERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPY 183
BLAST of DY260400 vs. ExPASy Swiss-Prot
Match: PCBP1_MOUSE (Poly(rC)-binding protein 1 OS=Mus musculus GN=Pcbp1 PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 4.230e-15 Identity = 51/177 (28.81%), Postives = 97/177 (54.80%), Query Frame = 3 Query: 225 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKIS--RLDHSYYGLNDRLVTLTG---TLDEPMRALELILLKLSEDTLYSQTMTVPY 734 IR L+ G++IGK G ++ + +SGARI +S + +RII ++G + I +A ++IDKL ++++ ++ LRL+VP + CGS+IGK G IK + + A ++++ L +S +R +T+ G ++ E ++ + L++L+ + + MT+PY Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN-----CPERIITLTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNS----TERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPY 183
BLAST of DY260400 vs. ExPASy Swiss-Prot
Match: PCBP1_HUMAN (Poly(rC)-binding protein 1 OS=Homo sapiens GN=PCBP1 PE=1 SV=2) HSP 1 Score: 82.8037 bits (203), Expect = 4.230e-15 Identity = 51/177 (28.81%), Postives = 97/177 (54.80%), Query Frame = 3 Query: 225 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKIS--RLDHSYYGLNDRLVTLTG---TLDEPMRALELILLKLSEDTLYSQTMTVPY 734 IR L+ G++IGK G ++ + +SGARI +S + +RII ++G + I +A ++IDKL ++++ ++ LRL+VP + CGS+IGK G IK + + A ++++ L +S +R +T+ G ++ E ++ + L++L+ + + MT+PY Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN-----CPERIITLTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNS----TERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPY 183
BLAST of DY260400 vs. ExPASy Swiss-Prot
Match: PCBP1_BOVIN (Poly(rC)-binding protein 1 OS=Bos taurus GN=PCBP1 PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 4.230e-15 Identity = 51/177 (28.81%), Postives = 97/177 (54.80%), Query Frame = 3 Query: 225 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKIS--RLDHSYYGLNDRLVTLTG---TLDEPMRALELILLKLSEDTLYSQTMTVPY 734 IR L+ G++IGK G ++ + +SGARI +S + +RII ++G + I +A ++IDKL ++++ ++ LRL+VP + CGS+IGK G IK + + A ++++ L +S +R +T+ G ++ E ++ + L++L+ + + MT+PY Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN-----CPERIITLTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNS----TERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPY 183
BLAST of DY260400 vs. ExPASy Swiss-Prot
Match: PCBP3_MOUSE (Poly(rC)-binding protein 3 OS=Mus musculus GN=Pcbp3 PE=2 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 1.361e-13 Identity = 53/174 (30.46%), Postives = 91/174 (52.30%), Query Frame = 3 Query: 225 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKIS--RLDHSYYGLNDRLVTLTGTLDEPMRALELILLKLSEDTLYSQTMTVPY 734 IR L+ G++IGK G T+ + +SGARI +S + +RI+ I+G D I +A ++ K ++ +K LRL+VP S CGS+IGK G+ IK + + A ++++ L +S +R VT++GT D ++ ++ I + + E + T+PY Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN-----CPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNS----TERAVTISGTPDAIIQCVKQICVVMLESP--PKGATIPY 178
BLAST of DY260400 vs. ExPASy Swiss-Prot
Match: PCBP3_HUMAN (Poly(rC)-binding protein 3 OS=Homo sapiens GN=PCBP3 PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 1.361e-13 Identity = 53/174 (30.46%), Postives = 91/174 (52.30%), Query Frame = 3 Query: 225 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKIS--RLDHSYYGLNDRLVTLTGTLDEPMRALELILLKLSEDTLYSQTMTVPY 734 IR L+ G++IGK G T+ + +SGARI +S + +RI+ I+G D I +A ++ K ++ +K LRL+VP S CGS+IGK G+ IK + + A ++++ L +S +R VT++GT D ++ ++ I + + E + T+PY Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN-----CPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNS----TERAVTISGTPDAIIQCVKQICVVMLESP--PKGATIPY 178
BLAST of DY260400 vs. ExPASy Swiss-Prot
Match: PCBP2_HUMAN (Poly(rC)-binding protein 2 OS=Homo sapiens GN=PCBP2 PE=1 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.777e-13 Identity = 51/176 (28.98%), Postives = 92/176 (52.27%), Query Frame = 3 Query: 225 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKIS--RLDHSYYGLNDRLVTLTGTLDEPMRALELILLKLSEDTLYS--QTMTVPY 734 IR L+ G++IGK G ++ + +SGARI +S + +RII ++G + I +A ++IDKL ++ + ++ LRL+VP S CGS+IGK G IK + + A ++++ L +S +R +T+ G + ++ I + + E S + +T+PY Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN-----CPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNS----TERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPY 182 The following BLAST results are available for this feature:
BLAST of DY260400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >DY260400 ID=DY260400; Name=DY260400; organism=Citrus clementina; type=EST; length=1164bpback to top |