DY260420

Overview
NameDY260420
Unique NameDY260420
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1168
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260420_ssr867 microsatellite DY260420_ssr867:867..878. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig227 contig Ccv1_Contig227:11..1171. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY260420 vs. ExPASy Swiss-Prot
Match: Y4844_ARATH (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.072e-42
Identity = 88/132 (66.67%), Postives = 105/132 (79.55%), Query Frame = 3 
Query:   69 RKPVFTKVDQLRPGTSGHTLTVKVVSTKMVL---QKGRGDGTQVRQM---RIAECLVGDETGMIIFTARNDQVDLMKEGTTVILRNAKIDMFKGSMRLAVDKWGRVEVAEPANFTVKEDNNLSLIEYELVNV 446
            RKPVF KV+QL+PGT+GHTLTVKV+   +V+   +K R   +  R     RI ECL+GDETG I+FTARNDQVDLMK G TVILRN++IDMFKG+MRL VDKWGR+E    A+FTVKEDNNLSL+EYEL+NV
Sbjct:   18 RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDNNLSLVEYELINV 149
The following BLAST results are available for this feature:
BLAST of DY260420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4844_ARATH1.072e-4266.67Uncharacterized protein At4g28440 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP12YH02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260420 ID=DY260420; Name=DY260420; organism=Citrus clementina; type=EST; length=1168bp
AAATCATTTCGTGTCTCCACTCAGGTTTTTTAGTTTTGCTGGAAATGGCA
GAATCAAAATCAGGATTGAGGAAACCAGTTTTTACCAAGGTTGATCAGCT
ACGCCCGGGTACTAGTGGGCACACTCTCACAGTGAAGGTCGTGAGTACGA
AGATGGTATTGCAGAAGGGTCGTGGTGATGGAACACAAGTACGTCAGATG
CGAATTGCTGAATGCTTGGTTGGTGATGAGACAGGAATGATTATCTTTAC
TGCTAGAAATGATCAAGTGGACCTGATGAAAGAGGGTACTACTGTGATTC
TGCGCAATGCAAAAATTGACATGTTTAAAGGATCAATGAGACTTGCTGTG
GACAAGTGGGGCCGTGTTGAAGTTGCAGAGCCTGCCAATTTCACCGTGAA
GGAAGATAACAACCTCTCTCTGATTGAATATGAGCTTGTGAATGTTGTAG
AAGAGTGAATTTCTGGACGGTGTTCACTTACTCACTGCAATGTGACCCAA
GAATAAAAAGAAATCCAGCATATCATAGTACTGTCGTTTATGCGGCATCT
CCTGTCCAAAACTGTGGTGCCCTTAAGAAGAAGAAATCTGGAACCTATTA
CTACCCAAGATGCTTTCCACCCTTGTGGCACATCCAGTAGAACCCTTTTG
ATTGGACCTCCCAACCGATGGCTGAGGCTCCTAAAGTTGAAAAGTGGAAA
CCCGCTGGCCTTTAAAACTGCTCCTTGGTTTGGTTTTGCCACCCATTTAT
TTTTTGGAACCCCCCTGCTCTTTGGCCATTAAAATTATACCCGAAAAATT
AAAATCCCCGGAATACGAAGGCTAATAATTACCAACCGCGCTTTTCCCCC
CCCCTACTCCCTCCCCACAACAACAACAACCAACACAACCACCCACTCTC
CTCACCCAAACCTCGCGCTACTAAGAAGACCCTGCCTTGCACCCTGCCCC
CCGCAGCCCTCCCCTCATTACCCACCACAACAAAAACACATCACACCCAA
CCCCACCCAATCCCCACCAAGCAAACCACCCGCATAAACCACGATCACAC
TACTGCTCGCCCCGTGAGCCTCCACGACTACCCCCTCTAACCCTTACCCC
CACCCCCCCCCACCCCTCCCACCACCTCTCCACCTCCCCACCAAACCCCA
CCCTCCGATACACCCCCC
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