DY260422

Overview
NameDY260422
Unique NameDY260422
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1207
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260422 vs. ExPASy Swiss-Prot
Match: CH60A_ARATH (Chaperonin CPN60, mitochondrial OS=Arabidopsis thaliana GN=CPN60 PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 2.194e-38
Identity = 93/192 (48.44%), Postives = 126/192 (65.62%), Query Frame = 3
Query:  192 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSNCVFFDLLTEIGPVRRYNGTDVLIIAEDIENDLLASPVLNGVATATKACVIKPPGFGESRKATLPDIANSPMGKVWT 767
            D R+G  MA+DA+V NL S A+ I++ E+IA  GT +ANG+R IGELIAKA EK     +  + D KT  + EL++  GM LDRGY SPYFITN KT++C L DP I+I EKK+S+      + E+   R+     +LI++ED+E+D LA+ +LN +    K C IK PGFGE+RKA L D+A    G+V T
Sbjct:  145 DLRRGISMAVDAVVTNLKSKARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIQDGKTLFN-ELEVVEGMKLDRGYTSPYFITNQKTQKCELDDPLILIHEKKISSINSIVKVLELALKRQ---RPLLIVSEDVESDALATLILNKLRAGIKVCAIKAPGFGENRKANLQDLAALTGGEVIT 332          
BLAST of DY260422 vs. ExPASy Swiss-Prot
Match: CH60B_ARATH (Chaperonin CPN60-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g33210 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.422e-37
Identity = 86/183 (46.99%), Postives = 122/183 (66.67%), Query Frame = 3
Query:  192 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSNCVFFDLLTEIGPVRRYNGTDVLIIAEDIENDLLASPVLNGVATATKACVIKPPGFGESRKATLPDIA 740
            D R+G ++A+D +V NL S A+ I++ E+IA  GT +ANGDR IGELIAKA E      +  + D KT  + EL++  GM +DRGY+SPYFITN KT++C L DP I+I EKK+SN    + + ++  +       +LI+AED+E+D LA+ +LN +    K C +K PGFGE+RKA L D+A
Sbjct:  146 DLRRGIKLAVDTVVTNLQSRARMISTSEEIAQVGTISANGDREIGELIAKAMETVGKEGVITIQDGKTLFN-ELEVVEGMKIDRGYISPYFITNPKTQKCELEDPLILIHEKKISN---INAMVKVLELALKKQRPLLIVAEDVESDALATLILNKLRANIKVCAVKAPGFGENRKANLHDLA 324          
BLAST of DY260422 vs. ExPASy Swiss-Prot
Match: CH61_CUCMA (Chaperonin CPN60-1, mitochondrial OS=Cucurbita maxima GN=CPN60-1 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.857e-37
Identity = 88/192 (45.83%), Postives = 127/192 (66.15%), Query Frame = 3
Query:  192 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSNCVFFDLLTEIGPVRRYNGTDVLIIAEDIENDLLASPVLNGVATATKACVIKPPGFGESRKATLPDIANSPMGKVWT 767
            D R+G  MA+D++V NL S A+ I++ E+IA  GT +ANG+R IGELIAKA EK     +  ++D KT  + EL++  GM LDRGY+SPYFITN K ++C L DP I+I EKK+S+    + + ++  +       +LI++ED+E++ LA+ +LN +    K C IK PGFGE+RKA L D+A    G+V T
Sbjct:  146 DLRRGISMAVDSVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITISDGKTMDN-ELEVVEGMKLDRGYISPYFITNQKNQKCELDDPLIIIYEKKISS---INAVVKVLELALKKQRPLLIVSEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKAGLQDLAVLTGGQVIT 333          
BLAST of DY260422 vs. ExPASy Swiss-Prot
Match: CH61_MAIZE (Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=CPN60I PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 3.167e-37
Identity = 95/222 (42.79%), Postives = 136/222 (61.26%), Query Frame = 3
Query:  192 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSNCVFFDLLTEIGPVRRYNGTDVLIIAEDIENDLLASPVLNGVATATKACVIKPPGFGESRKATLPDIANSPMGKVWTG------KDFECLSLGPPEKNYGIKEPNVI 839
            D R+G  MA+DA+V NL   A+ I++ E+IA  GT +ANG+R IGELIAKA EK     +  +AD  T  + EL++  GM LDRGY+SPYFITN KT++C L DP I+I +KKV+N      + ++  +       +LI+AED+E++ L + ++N +    K C +K PGFGE+RKA L D+A    G+V T       ++FE   LG  +K    K+  VI
Sbjct:  148 DLRRGISMAVDAVVTNLKGMARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIADGNTLYN-ELEVVEGMKLDRGYISPYFITNSKTQKCELEDPLILIHDKKVTN---MHAVVKVLEMALKKQKPLLIVAEDVESEALGTLIINKLRAGIKVCAVKAPGFGENRKANLQDLAILTGGEVITEELGMNLENFEPHMLGTCKKVTVSKDDTVI 365          
BLAST of DY260422 vs. ExPASy Swiss-Prot
Match: CH62_CUCMA (Chaperonin CPN60-2, mitochondrial OS=Cucurbita maxima GN=CPN60-2 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 4.137e-37
Identity = 90/192 (46.88%), Postives = 127/192 (66.15%), Query Frame = 3
Query:  192 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSNCVFFDLLTEIGPVRRYNGTDVLIIAEDIENDLLASPVLNGVATATKACVIKPPGFGESRKATLPDIANSPMGKVWT 767
            D R+G  MA+D++V NL S A+ I++ E+IA  GT +ANG+R IGELIAKA EK     +  ++D KT  + EL++  GM LDRGY+SPYFITN K ++C L DP I+I EKK+S+      + E+   R+     +LI++ED+E+D LA+ +LN +    K C IK PGFGE+RKA L D+A    G++ T
Sbjct:  146 DLRRGISMAVDSVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITISDGKTLFN-ELEVVEGMKLDRGYISPYFITNQKNQKCELDDPLILIHEKKISSINSVVKVLELALKRQ---RPLLIVSEDVESDALATLILNKLRAGIKVCAIKAPGFGENRKAGLHDLAVLTGGQLIT 333          
BLAST of DY260422 vs. ExPASy Swiss-Prot
Match: CH62_MAIZE (Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=CPN60II PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 2.681e-36
Identity = 86/192 (44.79%), Postives = 123/192 (64.06%), Query Frame = 3
Query:  192 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSNCVFFDLLTEIGPVRRYNGTDVLIIAEDIENDLLASPVLNGVATATKACVIKPPGFGESRKATLPDIANSPMGKVWT 767
            D R+G  MA+DA+V NL   A+ I++ E+IA  GT +ANG+R IGELIAKA EK     +  +AD  T  + EL++  GM LDRGY+SPYFITN K ++C L DP I+I +KKV+N      + ++  +       +LI+AED+E++ L + ++N +    K C +K PGFGE+RKA L D+A    G+V T
Sbjct:  148 DLRRGISMAVDAVVTNLKGMARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIADGNTLYN-ELEVVEGMKLDRGYISPYFITNSKAQKCELEDPLILIHDKKVTN---MHAVVKVLEMALKKQRPLLIVAEDVESEALGTLIINKLRAGIKVCAVKAPGFGENRKANLQDLAILTGGEVIT 335          
BLAST of DY260422 vs. ExPASy Swiss-Prot
Match: CH60C_ARATH (Chaperonin CPN60-like 2, mitochondrial OS=Arabidopsis thaliana GN=At3g13860 PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 3.068e-32
Identity = 83/185 (44.86%), Postives = 117/185 (63.24%), Query Frame = 3
Query:  186 VPDQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSNCVFFDLLTEIGPVRRYNGTDVLIIAEDIENDLLASPVLNGVATATKACVIKPPGFGESRKATLPDIA 740
            V D R G  MAI A+V +L S A  I++ E+I    T +ANG+R IGELIA+A EK     +  +AD  T  + EL++  GM L RGY+SPYFIT+ KT++C L +P I+I EKK+S+    + L ++      +   +LI+AED+E+D LA  +LN      K C IK PGFG++RKA+L D+A
Sbjct:  143 VMDLRVGINMAIAAVVSDLKSRAVMISTPEEITQVATISANGEREIGELIARAMEKVGKEGVITVADGNTLDN-ELEVVEGMKLARGYISPYFITDEKTQKCELENPIILIHEKKISD---INSLLKVLEAAVKSSRPLLIVAEDVESDALAMLILNKHHGGLKVCAIKAPGFGDNRKASLDDLA 323          
BLAST of DY260422 vs. ExPASy Swiss-Prot
Match: CH602_RHIEC (60 kDa chaperonin 2 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL2 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 2.597e-31
Identity = 82/193 (42.49%), Postives = 114/193 (59.07%), Query Frame = 3
Query:  192 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSNCVFFDLLTEIGPVRR---YNGTDVLIIAEDIENDLLASPVLNGVATATKACVIKPPGFGESRKATLPDIANSPMGKV 761
            D ++G  +A+DA+VG L + A+ I++  +IA  GT +ANGD  IG  +A+A EK     +  + + KT  + EL++  GM  DRGYLSPYF+TN       L DPYI+I EKK+SN      L  + PV      +G  +LIIAED+E + LA+ V+N +    K   +K PGFG+ RKA L DIA    G V
Sbjct:  115 DLKRGIDLAVDAVVGELKANARKISNNSEIAQVGTISANGDAEIGRYLAEAMEKVGNEGVITVEEAKTAET-ELEVVEGMQFDRGYLSPYFVTNQDKMRVELEDPYILIHEKKLSN------LQSMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAILTAGTV 300          
BLAST of DY260422 vs. ExPASy Swiss-Prot
Match: CH60_BRANA (Chaperonin CPN60, mitochondrial OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 4.430e-31
Identity = 91/238 (38.24%), Postives = 135/238 (56.72%), Query Frame = 3
Query:  192 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIA--KAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSNCVFFDLLTEIGPVRRYNGTDVLIIAEDIENDLLASPVLNGVATATKACVIKPPGFGESRKATLPDIANSPMGKVWT---GKDFECLS---LGPPEKNYGIKEPNVIPSFEGWPRNPKNLL 881
            D R+G ++A+D +V  L S A+ I++ E+IA  GT +ANGDR   EL+   KA E      +  + D KT  + EL++  GM +DRGY+SPYFITN K ++C L DP I+I EKK+SN    + + ++  +   +   +LI+A D+E+D LA  +LN +    K C +K PGFGE+RKA + D+A     +V T   G + E +    LG  +K    K+  V   F GW    K  +
Sbjct:  149 DLRRGIKLAVDTVVTKLKSRARMISTSEEIAQVGTISANGDR---ELVTDCKAMESVGKEGVITIQDGKTLFN-ELEVVEGMKIDRGYISPYFITNQKNQKCELEDPLILIHEKKISN---LNSMVKVLELALKSQRSLLIVAADLESDALAVLILNKLRAGIKVCAVKAPGFGENRKANMHDLATLTGAQVITEELGMNLEKIDLSMLGNCKKITVSKDDTV---FLGWGAGDKKAI 376          
BLAST of DY260422 vs. ExPASy Swiss-Prot
Match: CH603_SINMW (60 kDa chaperonin 3 OS=Sinorhizobium medicae (strain WSM419) GN=groL3 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 7.557e-31
Identity = 81/186 (43.55%), Postives = 110/186 (59.14%), Query Frame = 3
Query:  192 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPYIMILEKKVSNCVFFDLLTEIGPVRR---YNGTDVLIIAEDIENDLLASPVLNGVATATKACVIKPPGFGESRKATLPDIA 740
            D ++G  +A+DA+V  L S A+ I+   +IA  GT +ANGD  IG  +A+A EK     +  + + KT  + EL++  GM  DRGYLSPYF+TN       L DPYI+I EKK+SN      L  I PV      +G  +LIIAED+E + LA+ V+N +    K   +K PGFG+ RKA L DIA
Sbjct:  115 DLKRGIDLAVDAVVKELKSNARKISQNSEIAQVGTISANGDTEIGRYLAEAMEKVGNEGVITVEEAKTSDT-ELEVVEGMQFDRGYLSPYFVTNQDKMRVELEDPYILIHEKKLSN------LQSILPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIA 293          
The following BLAST results are available for this feature:
BLAST of DY260422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60A_ARATH2.194e-3848.44Chaperonin CPN60, mitochondrial OS=Arabidopsis tha... [more]
CH60B_ARATH1.422e-3746.99Chaperonin CPN60-like 1, mitochondrial OS=Arabidop... [more]
CH61_CUCMA1.857e-3745.83Chaperonin CPN60-1, mitochondrial OS=Cucurbita max... [more]
CH61_MAIZE3.167e-3742.79Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=C... [more]
CH62_CUCMA4.137e-3746.88Chaperonin CPN60-2, mitochondrial OS=Cucurbita max... [more]
CH62_MAIZE2.681e-3644.79Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=C... [more]
CH60C_ARATH3.068e-3244.86Chaperonin CPN60-like 2, mitochondrial OS=Arabidop... [more]
CH602_RHIEC2.597e-3142.4960 kDa chaperonin 2 OS=Rhizobium etli (strain CFN ... [more]
CH60_BRANA4.430e-3138.24Chaperonin CPN60, mitochondrial OS=Brassica napus ... [more]
CH603_SINMW7.557e-3143.5560 kDa chaperonin 3 OS=Sinorhizobium medicae (stra... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YH04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260422 ID=DY260422; Name=DY260422; organism=Citrus clementina; type=EST; length=1207bp
GATTTTTGGATTGTGAAACATCTTCTGGATTTTCTTAATTAAGAAATTAG
ATTTGCTGTGAATGGGAATGGAGTTAATTAATGGATACAGATCATCTGAT
CAAATTCAATTGACATCTATCTTCTGTCTGCAGGCACCAATTCTAAAGTT
AAAAGGGAGAATTTTATATGCGGGAGGATGCGGAAGTGCCAGACCAAAGA
CAAGGGGCTAGAATGGCAATTGATGCACTTGTGGGAAATTTATACAGCAC
AGCACAACCCATCACATCATTCGAACAAATAGCCCTGTTTGGAACGGCTG
CAGCAAATGGTGACAGAGTGATTGGCGAGCTCATAGCCAAGGCTTTTGAG
AAAGGTTGGGGAAACAATCTTCATGTGTTAGCTGATCGGAAAACACCACC
CAGTATTGAACTTCAGTTGTATTGGGGAATGACCCTAGACAGGGGCTATT
TGTCACCTTACTTCATCACCAATCATAAGACGAAAGAATGTGTTTTACGA
GATCCTTATATCATGATCCTTGAGAAAAAGGTTTCGAACTGCGTCTTCTT
TGACTTATTGACAGAGATTGGACCAGTTAGAAGATATAATGGCACAGATG
TACTGATCATTGCTGAAGATATTGAAAATGATCTCCTAGCAAGTCCTGTC
TTAAATGGAGTGGCTACAGCAACCAAGGCTTGTGTCATAAAACCTCCTGG
ATTTGGAGAAAGTAGGAAGGCTACCCTTCCGGACATTGCCAATTCCCCTA
TGGGAAAGGTCTGGACAGGAAAAGATTTTGAATGCCTATCTCTTGGCCCG
CCTGAAAAAAATTACGGAATCAAGGAACCAAACGTTATCCCTTCTTTTGA
AGGCTGGCCTAGGAACCCCAAAAATTTGTTACTGGGGAAATTTCCCAAAG
GAAAAATTTAAAAAAATTTCCCCGGAAAAAAACCGGTAAAAACCCCCCCC
TTCCCCCCCCTCCTCTTAAAACGGTTCGTGGGAAATAAAAAAACCCTAAA
TTGCCCGAAAAAAAAAAAAAAAAATTTTCCAAACGCCCCAAACTGCCCCC
TCCGGGCCCCCCAAGAAAACGCCAGTTTTAGAGGGGTGTGGTTCCCCTTT
TTTTACCCCCCCCCTCCCCGCCCGCTGGCACAAAAAAATTTCCAAAAACA
CTCAAACACCCCCCGCGCCCCACAAAAAAGAAGGGGGGGGGTATTAAACC
CCTAGCC
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