DY260435

Overview
NameDY260435
Unique NameDY260435
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1097
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1529 contig Ccv1_Contig1529:1..1097. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260435 vs. ExPASy Swiss-Prot
Match: PPI1_BRUSU (Probable peptidyl-prolyl cis-trans isomerase OS=Brucella suis GN=ppi PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.076e-16
Identity = 61/165 (36.97%), Postives = 80/165 (48.48%), Query Frame = 1
Query:   46 LNVIRISLTLIALIA------PASSQEDPQLGSARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVGGRSAPMNEVQRVEAEKT----VIGEFSDVKHVRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKG 510
            ++ IR +L   A +A        +S  DP+     V+ +   GD+     P +AP+ V  I KLVR G YN   F RV  GF+AQ  DV  G      +  RV    +    +  EFS    VRG + M R  +PNSA S F I+  D P L+GQY V GKV  G
Sbjct:    1 MSFIRSALAAAAFVALSIGAVQTASAADPE---NTVILKLKDGDVALELRPDLAPKHVAQIKKLVREGAYNGVAFHRVIPGFMAQTGDVKFGNMDKGFDAARVGTGGSNYPDLPAEFSKEPFVRGTVGMARSQNPNSANSQFFIMFDDGPFLNGQYTVVGKVVSG 162          
BLAST of DY260435 vs. ExPASy Swiss-Prot
Match: PPI1_BRUME (Probable peptidyl-prolyl cis-trans isomerase OS=Brucella melitensis GN=ppi PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 2.076e-16
Identity = 61/165 (36.97%), Postives = 80/165 (48.48%), Query Frame = 1
Query:   46 LNVIRISLTLIALIA------PASSQEDPQLGSARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVGGRSAPMNEVQRVEAEKT----VIGEFSDVKHVRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKG 510
            ++ IR +L   A +A        +S  DP+     V+ +   GD+     P +AP+ V  I KLVR G YN   F RV  GF+AQ  DV  G      +  RV    +    +  EFS    VRG + M R  +PNSA S F I+  D P L+GQY V GKV  G
Sbjct:    1 MSFIRSALAAAAFVALSIGAVQTASAADPE---NTVILKLKDGDVALELRPDLAPKHVAQIKKLVREGAYNGVAFHRVIPGFMAQTGDVKFGNMDKGFDAARVGTGGSNYPDLPAEFSKEPFVRGTVGMARSQNPNSANSQFFIMFDDGPFLNGQYTVVGKVVSG 162          
BLAST of DY260435 vs. ExPASy Swiss-Prot
Match: PPI1_BRUAB (Probable peptidyl-prolyl cis-trans isomerase OS=Brucella abortus GN=ppi PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.076e-16
Identity = 61/165 (36.97%), Postives = 80/165 (48.48%), Query Frame = 1
Query:   46 LNVIRISLTLIALIA------PASSQEDPQLGSARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVGGRSAPMNEVQRVEAEKT----VIGEFSDVKHVRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKG 510
            ++ IR +L   A +A        +S  DP+     V+ +   GD+     P +AP+ V  I KLVR G YN   F RV  GF+AQ  DV  G      +  RV    +    +  EFS    VRG + M R  +PNSA S F I+  D P L+GQY V GKV  G
Sbjct:    1 MSFIRSALAAAAFVALSIGAVQTASAADPE---NTVILKLKDGDVALEIRPDLAPKHVAQIKKLVREGAYNGVAFHRVIPGFMAQTGDVKFGNMDKGFDAARVGTGGSNYPDLPAEFSKEPFVRGTVGMARSQNPNSANSQFFIMFDDGPFLNGQYTVVGKVVSG 162          
BLAST of DY260435 vs. ExPASy Swiss-Prot
Match: PPI1_BRUA2 (Probable peptidyl-prolyl cis-trans isomerase OS=Brucella abortus (strain 2308) GN=ppi PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.076e-16
Identity = 61/165 (36.97%), Postives = 80/165 (48.48%), Query Frame = 1
Query:   46 LNVIRISLTLIALIA------PASSQEDPQLGSARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVGGRSAPMNEVQRVEAEKT----VIGEFSDVKHVRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKG 510
            ++ IR +L   A +A        +S  DP+     V+ +   GD+     P +AP+ V  I KLVR G YN   F RV  GF+AQ  DV  G      +  RV    +    +  EFS    VRG + M R  +PNSA S F I+  D P L+GQY V GKV  G
Sbjct:    1 MSFIRSALAAAAFVALSIGAVQTASAADPE---NTVILKLKDGDVALEIRPDLAPKHVAQIKKLVREGAYNGVAFHRVIPGFMAQTGDVKFGNMDKGFDAARVGTGGSNYPDLPAEFSKEPFVRGTVGMARSQNPNSANSQFFIMFDDGPFLNGQYTVVGKVVSG 162          
BLAST of DY260435 vs. ExPASy Swiss-Prot
Match: PPIL3_MOUSE (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Mus musculus GN=Ppil3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 6.250e-13
Identity = 54/140 (38.57%), Postives = 71/140 (50.71%), Query Frame = 1
Query:  133 VVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG-GRSAPMNEVQRVEAEKTVIGEFSD-VKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRTLEGLP 543
            V   T+ GDI+   +    P+T ++   L     YN   F R  KGF+ Q  D  G GR       ++ E       E+S+ +KH VRG++SM   + PN+  S F I  G  PHLD +Y VFGKV  G ETL  LE LP
Sbjct:    3 VTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCVFHRNIKGFMVQTGDPTGTGRGGSSIWAKKFE------DEYSEYLKHNVRGVVSMAN-NGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLP 135          
BLAST of DY260435 vs. ExPASy Swiss-Prot
Match: PPIL3_CHICK (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Gallus gallus GN=PPIL3 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 8.163e-13
Identity = 54/140 (38.57%), Postives = 72/140 (51.43%), Query Frame = 1
Query:  133 VVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG-GRSAPMNEVQRVEAEKTVIGEFSD-VKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRTLEGLP 543
            V   T+ GDI+   +    P+T ++   L     YN   F R  KGF+ Q  D +G G+       ++ E       EFS+ +KH VRG++SM   + PN+  S F I  G  PHLD +Y VFGKV  G ETL  LE LP
Sbjct:    3 VTLHTDVGDIKIELFCERTPKTCENFLALCASNYYNGCVFHRNIKGFMVQTGDPLGTGKGGTSIWGKKFE------DEFSEYLKHSVRGVVSMAN-NGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLP 135          
BLAST of DY260435 vs. ExPASy Swiss-Prot
Match: PPIL3_RAT (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Rattus norvegicus GN=Ppil3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.392e-12
Identity = 54/140 (38.57%), Postives = 71/140 (50.71%), Query Frame = 1
Query:  133 VVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG-GRSAPMNEVQRVEAEKTVIGEFSD-VKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRTLEGLP 543
            V   T+ GDI+   +    P+T ++   L     YN   F R  KGF+ Q  D  G GR       ++ E       E+S+ +KH VRG++SM   + PN+  S F I  G  PHLD +Y VFGKV  G ETL  LE LP
Sbjct:    3 VTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCVFHRNIKGFMVQTGDPTGTGRGGSSIWGKKFE------DEYSEYLKHNVRGVVSMAN-NGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLP 135          
BLAST of DY260435 vs. ExPASy Swiss-Prot
Match: PPIL3_HUMAN (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Homo sapiens GN=PPIL3 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.392e-12
Identity = 55/140 (39.29%), Postives = 72/140 (51.43%), Query Frame = 1
Query:  133 VVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG-GRSAPMNEVQRVEAEKTVIGEFSD-VKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRTLEGLP 543
            V   T+ GDI+   +    P+T ++   L     YN   F R  KGF+ Q  D  G GR    N +   + E     E+S+ +KH VRG++SM   + PN+  S F I  G  PHLD +Y VFGKV  G ETL  LE LP
Sbjct:    3 VTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGG--NSIWGKKFED----EYSEYLKHNVRGVVSMAN-NGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLP 135          
BLAST of DY260435 vs. ExPASy Swiss-Prot
Match: PPIL2_CRYNE (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Cryptococcus neoformans GN=CYP8 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.179e-11
Identity = 52/157 (33.12%), Postives = 74/157 (47.13%), Query Frame = 1
Query:   97 SSQEDPQLGSARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG-GRSAPMNEVQRVEAEKTVIGEFSDVKH-VRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRTLEGLPYT*RGD 561
            +  ++ Q   A     TN+G +    +   AP+TV +  +L + G Y+   F R+  GF+ Q  D  G GR     E    E  +   GE    KH  RG+LSM   S P +  S F       PHLDG++ VFGK+  G+ETL  +E +     GD
Sbjct:  304 TKDKERQKSKAYATITTNFGPLNVELHGDRAPKTVYNFVQLAKAGKYDNVVFHRLIPGFMVQGGDPTGTGRGG---ESYWGEPFRDEHGEKGAYKHDSRGVLSMAN-SGPRTNGSQFFFTFRPTPHLDGKHTVFGKLVGGEETLDKIERVNVRPGGD 456          
BLAST of DY260435 vs. ExPASy Swiss-Prot
Match: PPIA_HELPJ (Peptidyl-prolyl cis-trans isomerase OS=Helicobacter pylori J99 GN=ppiA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.850e-11
Identity = 50/158 (31.65%), Postives = 79/158 (50.00%), Query Frame = 1
Query:  103 QEDPQLGSARVVFQTNYGDIEFGFYPSVAPQTVDHIFKLVRLGCYNTNHFFRVDKGFVAQVADVVG-GRSAPMNEVQRVEAEKTVIGEFSDVKHVRGILSMGRYSDPNSAASSFSILLGDAPHLDGQYAVFGKVTKGDETLRTLEGLPYT*RGDLCDA 573
            +E+    +A    +TN G+I    +   APQ V +   L + G YN  +F RV  GFVAQ     G G   P + ++   A        +  KH RG +SM  ++  ++  S F +   D PHLDG++ VFGK+T   E+L  L+ +    +GD+ ++
Sbjct:   10 KEEELAKTAYATIKTNKGNITLELFYKDAPQAVSNFVTLAKEGFYNGLNFHRVIAGFVAQGGCPYGTGTGGPEHRIKCEVAH-------NPNKHQRGSISMA-HAGRDTGGSQFFLCFVDLPHLDGEHTVFGKITSA-ESLSVLDKIK---QGDIIES 155          
The following BLAST results are available for this feature:
BLAST of DY260435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PPI1_BRUSU2.076e-1636.97Probable peptidyl-prolyl cis-trans isomerase OS=Br... [more]
PPI1_BRUME2.076e-1636.97Probable peptidyl-prolyl cis-trans isomerase OS=Br... [more]
PPI1_BRUAB2.076e-1636.97Probable peptidyl-prolyl cis-trans isomerase OS=Br... [more]
PPI1_BRUA22.076e-1636.97Probable peptidyl-prolyl cis-trans isomerase OS=Br... [more]
PPIL3_MOUSE6.250e-1338.57Peptidyl-prolyl cis-trans isomerase-like 3 OS=Mus ... [more]
PPIL3_CHICK8.163e-1338.57Peptidyl-prolyl cis-trans isomerase-like 3 OS=Gall... [more]
PPIL3_RAT1.392e-1238.57Peptidyl-prolyl cis-trans isomerase-like 3 OS=Ratt... [more]
PPIL3_HUMAN1.392e-1239.29Peptidyl-prolyl cis-trans isomerase-like 3 OS=Homo... [more]
PPIL2_CRYNE1.179e-1133.12Peptidyl-prolyl cis-trans isomerase-like 2 OS=Cryp... [more]
PPIA_HELPJ5.850e-1131.65Peptidyl-prolyl cis-trans isomerase OS=Helicobacte... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP12YH18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260435 ID=DY260435; Name=DY260435; organism=Citrus clementina; type=EST; length=1097bp
CGAAATTTAGGTCCTTTTCGGAAGCCATAACATAGAGATAAAATGTTGAA
TGTGATTAGGATCTCTTTGACGTTAATTGCTCTTATTGCTCCCGCCTCGT
CCCAGGAGGATCCCCAGCTCGGCTCAGCTCGCGTTGTCTTTCAGACAAAT
TATGGAGATATTGAATTTGGGTTCTATCCGAGTGTTGCACCTCAAACAGT
TGATCACATATTCAAACTTGTTCGTCTCGGTTGTTATAACACCAATCACT
TTTTCCGGGTTGATAAAGGGTTTGTTGCACAAGTAGCTGATGTTGTGGGT
GGGCGGTCAGCTCCTATGAATGAAGTGCAACGTGTAGAGGCTGAAAAAAC
TGTTATCGGTGAATTTAGTGATGTTAAACATGTCAGAGGCATTCTTTCAA
TGGGAAGGTATTCTGATCCAAACAGTGCAGCGTCCTCGTTTTCAATACTT
CTTGGAGATGCTCCCCATCTTGATGGTCAGTACGCAGTATTTGGTAAAGT
TACTAAAGGCGATGAAACTTTGAGAACGCTTGAGGGACTCCCCTACACGT
AAAGAGGGGATCTTTGTGATGCCGACTGAGCGCATCACAATCCATTCATC
ATATTATTATGATACAGAGATGGAGATCTGTGAAAAAAAGAGGTCCGTTT
TGAAACGAAGGCCAACTGCCTCTGTCATGAAAATTGAAAAACCGAGAATG
AAATGCCTCCCCTGATTTAACAAGCCAAAAGGTTGATCCGCAAGAAAGTG
AAATTCCCTCCTTGGAATAAGCCAATAAGCCCCCCTTGCTTGGTTTAAAA
TTAAACCCCAACATTGGAATTGGGTCCTTTCCGCCCCGGAAAAAAAAAAA
ATCCCACCCCCCGGAACCGGCACGGAACCATGAAACCCCTTTTTTTCCCT
TAAAAACTTTTAAAAATTTCCTCCTTTTAAACTTTCCATTTTCAAGCCAA
AATTGTCTTTAAACTCTTTACTTTCTCTTCCCCGCAACTACCCCCGAAAG
CCCTTCCTCCCCACCCACGGCAAAACAATCACCCCTACCCACTTCACAGC
GACACAAAACACCCTCTTCTTCTCCACGCCGCAAGGCGTCCCCCTTA
back to top