DY260465

Overview
NameDY260465
Unique NameDY260465
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1287
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260465_ssr14 microsatellite DY260465_ssr14:14..25. BLAST: Citrus ESTs to Prunus persica proteins V1
DY260465_ssr578 microsatellite DY260465_ssr578:578..589. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1543 contig Ccv1_Contig1543:1..1287. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY260465 vs. ExPASy Swiss-Prot
Match: TAF10_MOUSE (Transcription initiation factor TFIID subunit 10 OS=Mus musculus GN=Taf10 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.005e-14
Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = 2 
Query:   80 LTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVXXXXXXXXXXXXLILTMEDLSKA 349
            L +FL  L  YTPTIPD +  +YL ++GF+  D R+IRL+++A QKF++++A DALQ CK +  A                LTMEDL+ A
Sbjct:  116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCKMKGTA--SGSSRSKSKDRKYTLTMEDLTPA 203

HSP 2 Score: 23.8682 bits (50), Expect = 3.005e-14
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 3 
Query:  351 LREYGVNVKHQEYF 392
            L EYG+NVK   YF
Sbjct:  204 LSEYGINVKKPHYF 217
[Close]
BLAST of DY260465 vs. ExPASy Swiss-Prot
Match: TAF10_HUMAN (Transcription initiation factor TFIID subunit 10 OS=Homo sapiens GN=TAF10 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.005e-14
Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = 2 
Query:   80 LTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVXXXXXXXXXXXXLILTMEDLSKA 349
            L +FL  L  YTPTIPD +  +YL ++GF+  D R+IRL+++A QKF++++A DALQ CK +  A                LTMEDL+ A
Sbjct:  116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCKMKGTA--SGSSRSKSKDRKYTLTMEDLTPA 203

HSP 2 Score: 23.8682 bits (50), Expect = 3.005e-14
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 3 
Query:  351 LREYGVNVKHQEYF 392
            L EYG+NVK   YF
Sbjct:  204 LSEYGINVKKPHYF 217
[Close]
BLAST of DY260465 vs. ExPASy Swiss-Prot
Match: TAFAB_DROME (Transcription initiation factor TFIID subunit 10b OS=Drosophila melanogaster GN=Taf10b PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.116e-11
Identity = 38/93 (40.86%), Postives = 52/93 (55.91%), Query Frame = 2 
Query:   80 LTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKAR-QAAVVXXXXXXXXXXXXLILTMEDLSKAPA 355
            L++F+S L  YTP IPD +  HYL   GFQ  D R++RL+++A QK+++++  DALQ  KAR                    LTMEDL  A A
Sbjct:   41 LSDFMSQLEDYTPLIPDAVTSHYLNMGGFQSDDKRIVRLISLAAQKYMSDIIDDALQHSKARTHMQTTNTPGGSKAKDRKFTLTMEDLQPALA 133
The following BLAST results are available for this feature:
BLAST of DY260465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TAF10_MOUSE3.005e-1443.33Transcription initiation factor TFIID subunit 10 O... [more]
TAF10_HUMAN3.005e-1443.33Transcription initiation factor TFIID subunit 10 O... [more]
TAFAB_DROME1.116e-1140.86Transcription initiation factor TFIID subunit 10b ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260465 ID=DY260465; Name=DY260465; organism=Citrus clementina; type=EST; length=1287bp
GGAAGAGCGAAGAGAATGAATGAATCATAATAACAACTTCCAGCAGTCGA
GCGATGGAAGGCACGACGATGATGCAGCGCTCACTGAATTTCTATCGTCG
TTAATGGGCTATACTCCCACCATACCTGATGAGTTGGTGGAGCACTACTT
AGCCAAGAGCGGGTTTCAATGTCCCGATGTTAGATTAATTAGGCTGGTAG
CTGTTGCTACGCAGAAGTTTGTTGCTGAGGTTGCTACTGATGCTCTTCAG
CAATGCAAGGCAAGGCAGGCAGCAGTGGTCAAGGACAAAAGGGACAAGCA
GCAGAAGGATAAACGTTTGATATTAACAATGGAGGATCTCTCGAAGGCAC
CTGCGTGAGTATGGCGTGAACGTGAAGCACCAGGAGTATTTTGCTGATAA
CCCTTCAACCCGGGATGGATCCTGCTTCAAAAGAAGAGTGAGCTGATGTT
GAAGTGGTGCAACATGATCAAGTTCATCCATTTGTTATATGTTTTTGACA
CTGCTGGTGCTCCAGCTGGCTGTTGCCCCCCTTGCCTCACCGTTTGTTCT
CCGACAAGACCACTATCTATGTCTCCTTACCTACCTACCTCGTAACTTTC
CCTCCCAACGTCGCATCCGATGGTCGTTCCGTTCTTGCACCCCCGCCTGC
AGTCCAACGCCCAAGCACCCGGCCAACGCTTCCCCCCTCCCAGCACAGCC
ACACCTACCCAACCACTCCTTCCCCCTCCCCAATAGCCCCTTCCACCCTG
CCCCATCCTCACTCGGATGCGCCTACCACTCCCGTCCCTTCCCCCTCTGT
GAACACCCCTTCTTCTACGACATCTACACCACTCACTCCCTACCAACTCC
GCAACTACAACCACAATCTCCTAGCAAAAACATCACACACTCAAAAAACA
ATAACCCATAAACGCACAGATCACCAAGCACTTCCCACAACCCCCTCACC
ACAACACAATCACTTCACCTACCTCAACACCACACTCTCCTTATCTTTCA
CCCTTACTCCTACACCACGCACCTTGCTTCTATTCATTTTCCCTTCTATC
ACACCTTTCCTACCTTCTCATACACCTACGTTCTCCTCCCTTCTCTTCCC
TCTCTGACTCCCCAAGTCTCATCCACCCTTCCTATTACTCCATCTCCTAC
TTTCCCTAACACCACCTACACACTCTTACTTAAGCCTCGGGTCGACCTCA
AGCTCTTAAAGTTCACAGCATCGCTCTCCATCCCCTCTTCTAGACCCTAC
ACTCCCTCAGTTATCATCAAGATATAGGTAAACCCTC
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