DY260466

Overview
NameDY260466
Unique NameDY260466
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1211
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260466_ssr1 microsatellite DY260466_ssr1:1..10. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1544 contig Ccv1_Contig1544:1..1211. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY260466 vs. ExPASy Swiss-Prot
Match: RL191_ARATH (60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 1.243e-65
Identity = 124/153 (81.05%), Postives = 138/153 (90.20%), Query Frame = 3 
Query:   33 MVSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*HMYHDLYMHVSGKVFKN*TCLMESIHKSKAEKVQKE 491
            MVSLKLQKRL+ASV+KCG+ KVWLDPNE ++ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRAR+MK AK KGRHSGYGKRKGTREARLPT +LWM RMRVL+RLL+KYRE+ KID HMYHD+YM V G VFKN   LMESIHKSKAEK +++
Sbjct:    1 MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMRVKGNVFKNKRVLMESIHKSKAEKAREK 153
[Close]
BLAST of DY260466 vs. ExPASy Swiss-Prot
Match: RL193_ARATH (60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3)

HSP 1 Score: 248.44 bits (633), Expect = 6.168e-65
Identity = 123/153 (80.39%), Postives = 138/153 (90.20%), Query Frame = 3 
Query:   33 MVSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*HMYHDLYMHVSGKVFKN*TCLMESIHKSKAEKVQKE 491
            MVSLKLQKRL++SVLKCG+ KVWLDPNE ++ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRAR++  AKRKGRHSGYGKRKGTREARLPT +LWM RMRVL+RLL+KYRE+ KID HMYHD+YM V G VFKN   LMESIHKSKAEK +++
Sbjct:    1 MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREK 153
[Close]
BLAST of DY260466 vs. ExPASy Swiss-Prot
Match: RL192_ARATH (60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 3.061e-64
Identity = 122/153 (79.74%), Postives = 134/153 (87.58%), Query Frame = 3 
Query:   33 MVSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*HMYHDLYMHVSGKVFKN*TCLMESIHKSKAEKVQKE 491
            MVSLK+QKRL+ASV+KCG+ KVWLDPNE  +ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRAR + +AKRKGRHSGYGKRKGTREARLPT ILWM RMRVL+R L KYRES KID HMYHD+YM V G VFKN   LMESIHK KAEK +++
Sbjct:    1 MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKMKAEKAREK 153
[Close]
BLAST of DY260466 vs. ExPASy Swiss-Prot
Match: RL19_DROME (60S ribosomal protein L19 OS=Drosophila melanogaster GN=RpL19 PE=1 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 7.557e-55
Identity = 103/149 (69.13%), Postives = 121/149 (81.21%), Query Frame = 3 
Query:   33 MVSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*HMYHDLYMHVSGKVFKN*TCLMESIHKSKAEK 479
            M SLKLQKRL+ASVL+CG+ KVWLDPNE+NEI+  NSRQNIRKL+KDG II+KP  +HSR R R+  +A+RKGRH G+GKRKGT  AR+PT +LWM R RVL+RLL+KYR+S KID H+YHDLYM   G VFKN   LME IHK KAEK
Sbjct:    1 MSSLKLQKRLAASVLRCGKKKVWLDPNEINEIANTNSRQNIRKLIKDGLIIKKPVVVHSRYRVRKNTEARRKGRHCGFGKRKGTANARMPTKLLWMQRQRVLRRLLKKYRDSKKIDRHLYHDLYMKCKGNVFKNKRVLMEYIHKKKAEK 149
[Close]
BLAST of DY260466 vs. ExPASy Swiss-Prot
Match: RL19_RAT (60S ribosomal protein L19 OS=Rattus norvegicus GN=Rpl19 PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.576e-52
Identity = 100/153 (65.36%), Postives = 120/153 (78.43%), Query Frame = 3 
Query:   33 MVSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*HMYHDLYMHVSGKVFKN*TCLMESIHKSKAEKVQKE 491
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P  + WM RMR+L+RLLR+YRES KID HMYH LY+ V G VFKN   LME IHK KA+K +K+
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKK 153
[Close]
BLAST of DY260466 vs. ExPASy Swiss-Prot
Match: RL19_PONAB (60S ribosomal protein L19 OS=Pongo abelii GN=RPL19 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.576e-52
Identity = 100/153 (65.36%), Postives = 120/153 (78.43%), Query Frame = 3 
Query:   33 MVSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*HMYHDLYMHVSGKVFKN*TCLMESIHKSKAEKVQKE 491
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P  + WM RMR+L+RLLR+YRES KID HMYH LY+ V G VFKN   LME IHK KA+K +K+
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKK 153
[Close]
BLAST of DY260466 vs. ExPASy Swiss-Prot
Match: RL19_MOUSE (60S ribosomal protein L19 OS=Mus musculus GN=Rpl19 PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.576e-52
Identity = 100/153 (65.36%), Postives = 120/153 (78.43%), Query Frame = 3 
Query:   33 MVSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*HMYHDLYMHVSGKVFKN*TCLMESIHKSKAEKVQKE 491
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P  + WM RMR+L+RLLR+YRES KID HMYH LY+ V G VFKN   LME IHK KA+K +K+
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKK 153
[Close]
BLAST of DY260466 vs. ExPASy Swiss-Prot
Match: RL19_MACFA (60S ribosomal protein L19 OS=Macaca fascicularis GN=RPL19 PE=2 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 1.576e-52
Identity = 100/153 (65.36%), Postives = 120/153 (78.43%), Query Frame = 3 
Query:   33 MVSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*HMYHDLYMHVSGKVFKN*TCLMESIHKSKAEKVQKE 491
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P  + WM RMR+L+RLLR+YRES KID HMYH LY+ V G VFKN   LME IHK KA+K +K+
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKK 153
[Close]
BLAST of DY260466 vs. ExPASy Swiss-Prot
Match: RL19_HUMAN (60S ribosomal protein L19 OS=Homo sapiens GN=RPL19 PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.576e-52
Identity = 100/153 (65.36%), Postives = 120/153 (78.43%), Query Frame = 3 
Query:   33 MVSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*HMYHDLYMHVSGKVFKN*TCLMESIHKSKAEKVQKE 491
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P  + WM RMR+L+RLLR+YRES KID HMYH LY+ V G VFKN   LME IHK KA+K +K+
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKK 153
[Close]
BLAST of DY260466 vs. ExPASy Swiss-Prot
Match: RL19_BOVIN (60S ribosomal protein L19 OS=Bos taurus GN=RPL19 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.576e-52
Identity = 100/153 (65.36%), Postives = 120/153 (78.43%), Query Frame = 3 
Query:   33 MVSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*HMYHDLYMHVSGKVFKN*TCLMESIHKSKAEKVQKE 491
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P  + WM RMR+L+RLLR+YRES KID HMYH LY+ V G VFKN   LME IHK KA+K +K+
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKK 153
The following BLAST results are available for this feature:
BLAST of DY260466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL191_ARATH1.243e-6581.0560S ribosomal protein L19-1 OS=Arabidopsis thalian... [more]
RL193_ARATH6.168e-6580.3960S ribosomal protein L19-3 OS=Arabidopsis thalian... [more]
RL192_ARATH3.061e-6479.7460S ribosomal protein L19-2 OS=Arabidopsis thalian... [more]
RL19_DROME7.557e-5569.1360S ribosomal protein L19 OS=Drosophila melanogast... [more]
RL19_RAT1.576e-5265.3660S ribosomal protein L19 OS=Rattus norvegicus GN=... [more]
RL19_PONAB1.576e-5265.3660S ribosomal protein L19 OS=Pongo abelii GN=RPL19... [more]
RL19_MOUSE1.576e-5265.3660S ribosomal protein L19 OS=Mus musculus GN=Rpl19... [more]
RL19_MACFA1.576e-5265.3660S ribosomal protein L19 OS=Macaca fascicularis G... [more]
RL19_HUMAN1.576e-5265.3660S ribosomal protein L19 OS=Homo sapiens GN=RPL19... [more]
RL19_BOVIN1.576e-5265.3660S ribosomal protein L19 OS=Bos taurus GN=RPL19 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ06FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260466 ID=DY260466; Name=DY260466; organism=Citrus clementina; type=EST; length=1211bp
GAGAGAGAGAGGGTTTTAGAAGAGAAGAGAAAATGGTGTCGTTGAAGTTA
CAGAAGCGGCTCTCCGCTAGCGTCCTCAAGTGCGGACGTGTCAAGGTCTG
GCTTGACCCTAATGAGGTCAACGAAATCTCCATGGCCAACTCCAGGCAGA
ACATTAGGAAATTGGTGAAGGATGGTTTCATCATCAGGAAGCCAACAAAG
ATCCACTCCCGTTCTCGTGCTCGCAGAATGAAGGACGCCAAGAGGAAGGG
CCGTCACTCTGGATATGGTAAGAGAAAGGGTACTAGGGAGGCGAGGCTTC
CCACCTAAATCCTCTGGATGATAAGGATGCGTGTGCTCAAGCGGTTGCTC
CGCAAATACCGTGAGTCGAACAAAATTGACTAGCACATGTACCATGACCT
GTACATGCACGTCTCGGGTAAAGTTTTTAAGAACTAGACCTGCCTCATGG
AAAGTATCCACAAATCAAAGGCTGAGAAGGTACAAAAAGAAAATCCTTTC
AGACAAGTTTAAAGCCTAAGCCACCCCTATCATTAGGTCAGCCTTGAACA
AGAAAACATGGCCTCGAAAAGACAATTTGATCATACTAGTCCACCTGGGA
CACAGCCTTCCAATCTCCCCCCCTTTCCATCCCCCCCCGGCAACCGCATC
ACTCGGTTGCTACCAACCGTGCCCACTGACCCCCATCTCCTCTCCCCCTC
ACCCTTGCTCTACTGCCAGAGCCTGTGGTTTGGTTGTTGTTCACTTCCTG
CCCGTGGATACATATAAGTCACAGATCCTGTGCACCTAAAACATCTCTTC
ATATAATCGTAATCGTTCACATTCAAGCCTACGTTCGATGTATCCCCTTC
GCCCGTTGTCTTTGCTCAATCCTCTCTCCTGAACGACCGCTCCACAGTCT
ACCGACCGATGACCCGATCTCGTCCTCCAGCTACCGCTCCCCTCTCTCCC
CCATCCACGCTATTTATGAATCTCACATTCTTTTCTTTTTATTTATAGAC
TATTAAAAACTCGTCGTAAATTAATTCAATAGTTTTCCACACGAATGCCG
CCTCATCTCCTAACCCCTCTGCTACCCCCGGTTTTCCTTTGCTTCGATCG
TGCCACACTTCCCTTATTATATTATCACTCTACACCTCATAACATGACCG
TTACACCATCTCATCCTAAACATACTACAGCTCAAGTCATAACGAATCTT
CCAACTTCCTC
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