DY260471

Overview
NameDY260471
Unique NameDY260471
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1219
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260471_ssr1124 microsatellite DY260471_ssr1124:1124..1133. BLAST: Citrus ESTs to Prunus persica proteins V1
DY260471_ssr985 microsatellite DY260471_ssr985:985..996. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1548 contig Ccv1_Contig1548:1..1220. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260471 vs. ExPASy Swiss-Prot
Match: TRNH_DATST (Tropinone reductase homolog OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.901e-62
Identity = 108/178 (60.67%), Postives = 145/178 (81.46%), Query Frame = 3
Query:   75 EQRWSLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNPLTKNLACQWAK 608
            ++RWSL+GMTALVTGGT+GIGYA+VEELA FGA V+TCSR++ +L++ +++W+ KG +VSG VCD+   +QR+ LM +V+S F+GKLNILINNAGT IPK            +M TNFE++Y+L QLAHPLLK++GN +I+F SS AGVIA+P+ SIYA+SKGA+N +TK+LAC+WAK
Sbjct:   10 DRRWSLRGMTALVTGGTRGIGYAIVEELANFGAEVYTCSRSQNDLDECLEKWRRKGFKVSGPVCDVSSISQRQTLMESVTSSFNGKLNILINNAGTTIPKEATNFTAEDYSIIMGTNFEASYNLCQLAHPLLKASGNASIVFNSSAAGVIAVPLSSIYAASKGAINQVTKSLACEWAK 187          

HSP 2 Score: 33.4982 bits (75), Expect = 2.901e-62
Identity = 14/28 (50.00%), Postives = 18/28 (64.29%), Query Frame = 2
Query:  581 KELGMPVGKNQIRVNTVAPWVIRTPPLD 664
            K L     K+ IRVN VAPW+I TP ++
Sbjct:  179 KSLACEWAKDSIRVNAVAPWIINTPIIE 206          
BLAST of DY260471 vs. ExPASy Swiss-Prot
Match: TRN1_DATST (Tropinone reductase 1 OS=Datura stramonium GN=TR1 PE=1 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.093e-61
Identity = 110/178 (61.80%), Postives = 139/178 (78.09%), Query Frame = 3
Query:   75 EQRWSLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNPLTKNLACQWAK 608
            E RWSLKG TALVTGG+KGIGYA+VEELA  GA V+TCSRNE EL++ ++ W+ KGL V GSVCDL  R +R+KLM TV+  FDGKLNIL+NNAG  I K            +M TNFE+AYHLSQ+A+PLLK++ NGN+IF+SS+AG  A+P  S+Y++SKGA+N +TK+LAC+WAK
Sbjct:   14 EGRWSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACEWAK 191          

HSP 2 Score: 30.8018 bits (68), Expect = 1.093e-61
Identity = 16/32 (50.00%), Postives = 20/32 (62.50%), Query Frame = 2
Query:  581 KELGMPVGKNQIRVNTVAPWVIRTPPLDTVKK 676
            K L     K+ IRVN+VAP VI TP ++T  K
Sbjct:  183 KSLACEWAKDNIRVNSVAPGVILTPLVETAIK 214          
BLAST of DY260471 vs. ExPASy Swiss-Prot
Match: TRNH1_ARATH (Tropinone reductase homolog At1g07440 OS=Arabidopsis thaliana GN=At1g07440 PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 1.254e-57
Identity = 107/178 (60.11%), Postives = 136/178 (76.40%), Query Frame = 3
Query:   72 REQRWSLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNPLTKNLACQWA 605
            + QRWSLK  T LVTGGTKGIG+A+VEE A FGA++HTC+RNE ELN+ + +W+ KG QV+GSVCD  +R +REKLM TVSS F GKL+ILINN G    K             ++TN ESAYHLSQLAHPLLK++G GNIIF+SS+AGV++  + SIY+++KGA+N L +NLAC+WA
Sbjct:    6 QSQRWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSATKGALNQLARNLACEWA 183          
BLAST of DY260471 vs. ExPASy Swiss-Prot
Match: TRN2_DATST (Tropinone reductase 2 OS=Datura stramonium GN=TR2 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 2.707e-52
Identity = 97/176 (55.11%), Postives = 133/176 (75.57%), Query Frame = 3
Query:   81 RWSLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNPLTKNLACQWAK 608
            RW+L+G TALVTGG++GIGY +VEELA+ GA V+TCSRN+ ELN  + +W+SKG +V  SVCDL  R++R++LM TV++ F GKLNIL+NNAG  I K            +M+ NFE+AYHLS LAHP LK++  GN++FISSV+G +A+P  ++Y ++KGAM+ LT+ LA +WAK
Sbjct:    4 RWNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCLAFEWAK 179          
BLAST of DY260471 vs. ExPASy Swiss-Prot
Match: TRN2_HYONI (Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 3.909e-51
Identity = 96/176 (54.55%), Postives = 130/176 (73.86%), Query Frame = 3
Query:   81 RWSLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNPLTKNLACQWAK 608
            RW+L+G TALVTGG++GIGY +VEELA  GA V+TCSRN+ EL++ + +W+SKG  V  SVCDL  R++RE+ M TVS+ F GKLNIL+NNAG  I K            +M+ NFE+AYHLS LAHP LK++  GN++FISS++G  A+P  ++Y ++KGAM+ LT+ LA +WAK
Sbjct:    4 RWNLEGCTALVTGGSRGIGYGIVEELANLGASVYTCSRNQKELDECLTQWRSKGFNVEASVCDLSSRSEREEFMKTVSNHFHGKLNILVNNAGIVIYKEAKDYTMEDYSHIMSINFEAAYHLSVLAHPFLKASERGNVVFISSISGASALPYEAVYGATKGAMDQLTRCLAFEWAK 179          
BLAST of DY260471 vs. ExPASy Swiss-Prot
Match: DHK1_STRVN (Granaticin polyketide synthase putative ketoacyl reductase 1 OS=Streptomyces violaceoruber GN=gra-orf5 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.551e-15
Identity = 58/174 (33.33%), Postives = 87/174 (50.00%), Query Frame = 3
Query:  105 ALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAG-----NGNIIFISSVAGVIAIPMCSIYASSKGAMNPLTKNLACQWAKT 611
            ALVTG T GIG A+   LAA GA    C+R+E  L Q ++E + +G  V G+VCD+   AQ    +     ++ G ++IL+NNAG                 V+TTN  S + +++    +L + G      G II I+S  G   +     Y++SK  +  LTK L  + A+T
Sbjct:   20 ALVTGATSGIGLAIARRLAALGARTFLCARDEERLAQTVKELRGEGFDVDGTVCDVADPAQIRAYVAAAVQRY-GTVDILVNNAGRSGGGATAEIADELWLDVITTNLTSVFLMTK---EVLNAGGMLAKKRGRIINIASTGGKQGVVHAVPYSASKHGVVGLTKALGLELART 189          
BLAST of DY260471 vs. ExPASy Swiss-Prot
Match: DHRS4_BOVIN (Dehydrogenase/reductase SDR family member 4 OS=Bos taurus GN=DHRS4 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.514e-15
Identity = 56/179 (31.28%), Postives = 90/179 (50.28%), Query Frame = 3
Query:   78 QRWSLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGTF-IPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNPLTKNLACQWAKT 611
            +R  L    ALVT  T GIG+A+   LA  GA V   SR +  +++ +   K +GL V+G+VC +     RE+L+ T + +  G ++ILI+NA                   ++  N ++   L++   P +   G G+I+ +SS+A     P    Y  SK A+  LTKNLA + A++
Sbjct:    8 RRNPLDNKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDRAVATLKGEGLSVTGTVCHVGKAEDRERLVAT-AVKLHGGVDILISNAAVSPFFGSLMDVPEEVWDKILDVNVKATALLTKAVVPEMAKRGGGSIVIVSSIAAYSPFPSLGPYNVSKTALLGLTKNLALELAES 185          
BLAST of DY260471 vs. ExPASy Swiss-Prot
Match: DHRS4_MOUSE (Dehydrogenase/reductase SDR family member 4 OS=Mus musculus GN=Dhrs4 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.085e-14
Identity = 55/178 (30.90%), Postives = 86/178 (48.31%), Query Frame = 3
Query:   78 QRWSLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGT--FIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNPLTKNLACQWA 605
            +R  L    ALVT  T GIG+A+   LA  GA V   SR +  +++ +   + +GL V+G VC +     REKL+ T   +  G ++IL++NA    F               V++ N  +   + +   P ++  G G+++ + SVAG    P    Y  SK A+  LTKN A + A
Sbjct:    8 RRNPLSNKVALVTASTDGIGFAIARRLAEDGAHVVVSSRKQQNVDRAVATLQGEGLSVTGIVCHVGKAEDREKLITTALKRHRG-IDILVSNAAVNPFFGN-LMDVTEEVWDKVLSINVTATAMMIKAVVPEMEKRGGGSVVIVGSVAGFTRFPSLGPYNVSKTALLGLTKNFAAELA 183          

HSP 2 Score: 21.1718 bits (43), Expect = 2.085e-14
Identity = 9/24 (37.50%), Postives = 13/24 (54.17%), Query Frame = 2
Query:  581 KELGMPVGKNQIRVNTVAPWVIRT 652
            K     +    IRVN +AP +I+T
Sbjct:  176 KNFAAELAPKNIRVNCLAPGLIKT 199          
BLAST of DY260471 vs. ExPASy Swiss-Prot
Match: DHRS4_PIG (Dehydrogenase/reductase SDR family member 4 OS=Sus scrofa GN=DHRS4 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.085e-14
Identity = 53/179 (29.61%), Postives = 89/179 (49.72%), Query Frame = 3
Query:   75 EQRWSLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGT--FIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNPLTKNLACQWA 605
            E+R  L+   ALVT  T GIG A+   LA  GA V   SR +  +++ +   + +GL V+G+VC +     RE+L + ++    G ++IL++NA    F               ++  N ++   +++   P ++  G G+++ +SSV      P    Y  SK A+  LTKNLA + A
Sbjct:    7 ERRKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERL-VAMAVNLHGGVDILVSNAAVNPFFGN-IIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAVELA 183          

HSP 2 Score: 23.483 bits (49), Expect = 2.085e-14
Identity = 10/24 (41.67%), Postives = 15/24 (62.50%), Query Frame = 2
Query:  581 KELGMPVGKNQIRVNTVAPWVIRT 652
            K L + +    IRVN +AP +I+T
Sbjct:  176 KNLAVELAPRNIRVNCLAPGLIKT 199          
BLAST of DY260471 vs. ExPASy Swiss-Prot
Match: DHRS4_PONAB (Dehydrogenase/reductase SDR family member 4 OS=Pongo abelii GN=DHRS4 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.520e-14
Identity = 54/178 (30.34%), Postives = 89/178 (50.00%), Query Frame = 3
Query:   78 QRWSLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGT--FIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNPLTKNLACQWA 605
            +R  L    ALVT  T GIG+A+   LA  GA V   SR +  ++Q +   + +GL V+G+VC +     RE+L+ T + +  G ++IL++NA    F                +  N ++   +++   P ++  G G+++ +SS+A     P  S Y  SK A+  LTK LA + A
Sbjct:    8 RRDPLANKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVAT-AVKLHGGIDILVSNAAVNPFFGS-LMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELA 183          

HSP 2 Score: 23.0978 bits (48), Expect = 3.520e-14
Identity = 10/24 (41.67%), Postives = 15/24 (62.50%), Query Frame = 2
Query:  581 KELGMPVGKNQIRVNTVAPWVIRT 652
            K L + +    IRVN +AP +I+T
Sbjct:  176 KTLAIELAPRNIRVNCLAPGLIKT 199          
The following BLAST results are available for this feature:
BLAST of DY260471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
TRNH_DATST2.901e-6260.67Tropinone reductase homolog OS=Datura stramonium P... [more]
TRN1_DATST1.093e-6161.80Tropinone reductase 1 OS=Datura stramonium GN=TR1 ... [more]
TRNH1_ARATH1.254e-5760.11Tropinone reductase homolog At1g07440 OS=Arabidops... [more]
TRN2_DATST2.707e-5255.11Tropinone reductase 2 OS=Datura stramonium GN=TR2 ... [more]
TRN2_HYONI3.909e-5154.55Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 P... [more]
DHK1_STRVN1.551e-1533.33Granaticin polyketide synthase putative ketoacyl r... [more]
DHRS4_BOVIN4.514e-1531.28Dehydrogenase/reductase SDR family member 4 OS=Bos... [more]
DHRS4_MOUSE2.085e-1430.90Dehydrogenase/reductase SDR family member 4 OS=Mus... [more]
DHRS4_PIG2.085e-1429.61Dehydrogenase/reductase SDR family member 4 OS=Sus... [more]
DHRS4_PONAB3.520e-1430.34Dehydrogenase/reductase SDR family member 4 OS=Pon... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260471 ID=DY260471; Name=DY260471; organism=Citrus clementina; type=EST; length=1219bp
GTATTTTAGATAAGATAGGAATAGTTGCTTTTCCTCCTATTAATCAATAG
GAAAAAAACATGTCAGATTTTAGAGAGCAAAGATGGTCTCTGAAGGGTAT
GACCGCCCTTGTCACAGGCGGAACCAAAGGCATCGGATATGCAGTAGTAG
AAGAACTAGCAGCATTTGGAGCAATAGTTCATACATGTTCCCGTAACGAA
ACAGAGCTTAATCAAAGAATTCAAGAATGGAAGAGTAAGGGGCTTCAAGT
GAGTGGCTCTGTATGTGACCTGAAAATTAGAGCTCAGCGAGAGAAGCTGA
TGTTGACTGTCTCGTCTCAGTTTGATGGCAAGCTCAACATCCTTATTAAC
AATGCTGGAACCTTCATACCTAAGGAAACCACAGAATTTACCGAGGAGGA
TTTCTCAACTGTAATGACTACCAATTTTGAGTCTGCTTATCATCTGTCTC
AACTTGCACACCCCCTCTTAAAATCAGCAGGAAATGGAAACATCATATTT
ATATCCTCTGTTGCAGGCGTTATTGCTATACCTATGTGTTCCATCTATGC
ATCGAGTAAAGGGGCGATGAATCCACTCACAAAGAACTTGGCATGCCAGT
GGGCAAAAACCAAATTCGTGTGAATACAGTTGCACCATGGGTCATTAGAA
CCCCACCTCTTGATACCGTAAAAAAAGATTCAAATTTTCCGGACATGCAA
ATCCCATGGTACTCCCGTACTCCAATGCCCCCGCCCCGGAGAACCTAACA
AGGGTTCCTCCCTAGGAAGCATTCCCTAAGCTTGCCGCCCCCCTTCAATA
TCCCCGGGGCCAGCGTAATTGGGTCACCGGAGGACCCCCATCCCGGAATT
TTAACCGACCCCTCATAACTCTCATAGCTTGTTCCCATCCGTCCCGGCCC
ACCAAGCACCCACCCCGACCCCCTCCAAACCCAAACTCAACCCTAGCCAC
CACGTCCCGCGCTCCCCGCCGCCTCACTGAACCTCACCACCACCACAACT
CCGATCTCTCAGCCACATAGCCACCACACCAACCCATACACGACCCTACC
ACACTAACCCCTCATACGCACAGCCCTCCACTTGGTTTCGCTGCCCCTCG
ACCTTTACTGCCACCCATCACGACTCTCTCTCTAACGAAAGCATCCACAC
ACACTCCACGTCTACATCCCCTGATACACAAACATGCTCACCCATACGCC
CTCACCCCCTCCACCACCC
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