DY260530

Overview
NameDY260530
Unique NameDY260530
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1205
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260530_ssr976 microsatellite DY260530_ssr976:976..987. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1575 contig Ccv1_Contig1575:1..1205. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260530 vs. ExPASy Swiss-Prot
Match: ABIL1_ARATH (Protein ABIL1 OS=Arabidopsis thaliana GN=ABIL1 PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 4.404e-57
Identity = 128/225 (56.89%), Postives = 151/225 (67.11%), Query Frame = 2
Query:    2 NAVDPLGTVAYKLTDLLEQQTSDVSTMELMVSCMNQKLLTCQTYSNKEGLRQQQLLAFIPRHHKHYILPNSVNKKVHFSPRVPTDARQNHFS--SRLPPTGIPASKTPSWHLASETKSTSKGTQQALTSSED----RKTSGVFHLLDNEENKLTKSSAVSAQLSSGGPASSALVQSFGVARRDAMEGNKTLAPFRSFD-NPRREIVPCPLFPAKVCHQPFLVNRK 655
            NAVD LGTVA KLTDL + Q SD+STME+  SC++Q+LLTC+TY +KEGLRQQQLLA IP HHKHYILPNSVNK+VHFSP   TD RQNH+   SRL P+  PASK+ SWHL SETKST KGT     SS+D     KTSGVFHLL ++EN   K     +Q+ SG PA+S        A +D +E  K L   RS D NPRREI+  P+    V    F V +K
Sbjct:   74 NAVDHLGTVASKLTDLFDHQNSDISTMEMRASCVSQQLLTCRTYIDKEGLRQQQLLAVIPLHHKHYILPNSVNKRVHFSPLRRTDTRQNHYQAISRLQPSDAPASKSLSWHLGSETKSTLKGTSTVAPSSKDSKAFSKTSGVFHLLGDDENIANKKPLAGSQV-SGVPAAS-------TAHKD-LEVPKLLTAHRSLDNNPRREIIQAPVRTKSVL-SAFFVKQK 288          

HSP 2 Score: 25.409 bits (54), Expect = 4.404e-57
Identity = 12/16 (75.00%), Postives = 12/16 (75.00%), Query Frame = 1
Query:  634 AFLGKQKTSKPKAGYV 681
            AF  KQKT K KAGYV
Sbjct:  282 AFFVKQKTPKLKAGYV 297          
BLAST of DY260530 vs. ExPASy Swiss-Prot
Match: ABIL1_ORYSJ (Probable protein ABIL1 OS=Oryza sativa subsp. japonica GN=Os01g0622700 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 8.626e-35
Identity = 89/204 (43.63%), Postives = 121/204 (59.31%), Query Frame = 2
Query:    2 NAVDPLGTVAYKLTDLLEQQTSDVSTMELMVSCMNQKLLTCQTYSNKEGLRQQQLLAFIPRHHKHYILPNSVNKKVHFSPRVPTDARQNHFSSRLPPTGIPASKTPSWHLASETKSTSKGTQQALTSSEDRKTSGVFHLLDNEENKLTKSSAVSAQLSSGGPASSALVQSFGVARRDAMEGNKTLAPFRSFDNPR-REIVPCPL 610
            NAVD LGTVAYKLTDL EQQ S+VST+EL V+C+NQ++LTCQTY++KEG+RQQQ+     RHHKHYI+P   NK++     + TDA      SR  P   P++KT  WHLASE  S + G +Q+    E+ K +           K   +S +   L +   +S   + + G+  +    G + L+ F SFDNPR R+I   PL
Sbjct:   92 NAVDHLGTVAYKLTDLYEQQASEVSTLELKVACLNQQVLTCQTYTDKEGIRQQQMTGTATRHHKHYIVPTLANKRMQAFSEMQTDA---DIDSR--PRPYPSAKTLFWHLASEKNSKTNGARQSEFVLEETKAT-----KPASRGKEPSTSPLPKHLQTNLASSDFAMHNVGMKDQ---PGVRHLSSFSSFDNPRGRQIQKAPL 282          
BLAST of DY260530 vs. ExPASy Swiss-Prot
Match: ABIL4_ORYSJ (Probable protein ABIL4 OS=Oryza sativa subsp. japonica GN=Os05g0585400 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.334e-27
Identity = 84/229 (36.68%), Postives = 126/229 (55.02%), Query Frame = 2
Query:    2 NAVDPLGTVAYKLTDLLEQQTSDVSTMELMVSCMNQKLLTCQTYSNKEGLRQQQLLAFIPRHHKHYILPNSVNKKVHFSPRVPTDARQNHFSSRLPPTGIPASKTPSWHLASETKSTSKGTQQAL-----TSSEDRKTSGVFHLLDNEENKLTKSSAVSAQLSSGGPASSALVQSFGVARRDAMEGNKTLAPFRSFDNPR-REIVPCPLFPAKVCHQPFLVNRKLLSRK 670
            NAVD LGTVAYKLTDL EQQ S+VST+EL V+ +NQ++LTCQ ++++ GLRQQ++     +HHKHYILP++ +K+   + R+ TD  Q+       P   P++KT SWHL+SE   ++ G Q+       T S    ++G  +LL     K   +S +   L   G  S    ++ G        G   ++ F + D PR REI   P+    +    F+ ++   +RK
Sbjct:   83 NAVDHLGTVAYKLTDLFEQQASEVSTVELKVARLNQQILTCQIFTDRAGLRQQKIGGTTFKHHKHYILPSTGHKRTQ-AARLQTDNGQDS-----KPKPYPSAKTLSWHLSSENSISTTGAQKYTFTLGDTISSKPASNGSMYLL----GKDIPASPMHKPLQPNGNTSFDAKKNVG---SKDQPGFMHMSTFNALDKPRGREIQKVPVSTKSMLATLFIKHKSAKTRK 298          
BLAST of DY260530 vs. ExPASy Swiss-Prot
Match: ABIL2_ARATH (Protein ABIL2 OS=Arabidopsis thaliana GN=ABIL2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.209e-14
Identity = 61/203 (30.05%), Postives = 94/203 (46.31%), Query Frame = 2
Query:    2 NAVDPLGTVAYKLTDLLEQQTSDVSTMELMVSCMNQKLLTCQTYSNKEGLRQQQLLAFIPRHHKHYILP-------NSVNKKVHFSPRVPTDARQNHFSSRLPPTGIPASKTPSWHLASETKSTSKGTQQALTSSEDRKTSGVFHLLDNEENKLTKSSAVSAQLSSGGPASSALVQSFGVARRDAMEGNKTLAPFRSFDNPRR 589
            N VD LG+V YK+ D ++++  +VS  EL VSC+ Q+L  CQ Y + EG  QQ L+   P+ HK YILP        ++ K  +F   +      N F + +  T     +TP   +   T  +S   Q    S+    TS +      E++K + S      L SG   S A  +S  ++R      ++++ P R    PRR
Sbjct:   69 NTVDHLGSVTYKVNDFIDEKVDEVSETELRVSCIEQRLRMCQEYMDHEGRSQQSLVIDTPKFHKRYILPAGEIMTATNLEKLKYFGSSLEDADDWNQFRNAVRAT---IRETPPPPVRKSTSQSSSPRQPPQRSATFSFTSTI---PKKEQDKRSVSPHRFPLLRSG---SVATRKSASISRPTTPSKSRSITPIRYPSEPRR 262          
BLAST of DY260530 vs. ExPASy Swiss-Prot
Match: ABIL3_ARATH (Protein ABIL3 OS=Arabidopsis thaliana GN=ABIL3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.286e-11
Identity = 32/75 (42.67%), Postives = 47/75 (62.67%), Query Frame = 2
Query:    2 NAVDPLGTVAYKLTDLLEQQTSDVSTMELMVSCMNQKLLTCQTYSNKEGLRQQQLLAFIPRHHKHYILPNSVNKK 226
            N VD LG+V YK+ D ++++  +V+  EL VSC+ Q+L  CQ Y + EG  QQ L+   P+ HK Y LP+   K+
Sbjct:   75 NTVDHLGSVTYKVNDFVDEKVDEVAGTELRVSCIEQRLRMCQEYMDHEGRSQQSLVIDTPKFHKRYFLPSGEIKR 149          
BLAST of DY260530 vs. ExPASy Swiss-Prot
Match: ABIL3_ORYSJ (Probable protein ABIL3 OS=Oryza sativa subsp. japonica GN=Os01g0236400 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.092e-11
Identity = 51/182 (28.02%), Postives = 88/182 (48.35%), Query Frame = 2
Query:    2 NAVDPLGTVAYKLTDLLEQQTSDVSTMELMVSCMNQKLLTCQTYSNKEGLRQQQLLAFIPRHHKHYILPNS--VNKKVHFSPRVPTDARQNHFSSRLPPT---GIPASKTPSWHLASETKSTSKGTQQALTS-SEDRKTSGVFHLLDNEENKLTKSSAVSAQLSSGGPASSALVQSFGVARR 529
            + VD LG V+YK+ +L+++++ +V+  E  VS + Q++  CQ   ++EG  QQ LL   P++H+ YILP +  V   +H     P  +RQ H S ++  +     P  +  +   A     +++GT     S S  RK         +   ++  +     +  S  P S+ L +S  VARR
Sbjct:   84 STVDHLGFVSYKVDNLVKERSDEVNETEFRVSSVEQRVRICQQTIDQEGRSQQSLLIRAPKYHRRYILPGTDIVESAIHPVSEPPRYSRQ-HMSRKMHKSQSISTPVGRQSTMRSARSPSPSARGTHHRSRSLSPSRKARA-----KSPSPQIISTQTKETRAGSPIPNSNPLARSATVARR 259          
The following BLAST results are available for this feature:
BLAST of DY260530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ABIL1_ARATH4.404e-5756.89Protein ABIL1 OS=Arabidopsis thaliana GN=ABIL1 PE=... [more]
ABIL1_ORYSJ8.626e-3543.63Probable protein ABIL1 OS=Oryza sativa subsp. japo... [more]
ABIL4_ORYSJ1.334e-2736.68Probable protein ABIL4 OS=Oryza sativa subsp. japo... [more]
ABIL2_ARATH2.209e-1430.05Protein ABIL2 OS=Arabidopsis thaliana GN=ABIL2 PE=... [more]
ABIL3_ARATH2.286e-1142.67Protein ABIL3 OS=Arabidopsis thaliana GN=ABIL3 PE=... [more]
ABIL3_ORYSJ5.092e-1128.02Probable protein ABIL3 OS=Oryza sativa subsp. japo... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP12YM17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260530 ID=DY260530; Name=DY260530; organism=Citrus clementina; type=EST; length=1205bp
CAATGCTGTTGATCCTCTTGGCACTGTGGCTTACAAGTTAACTGACCTTC
TTGAGCAGCAAACATCTGATGTCTCAACCATGGAGCTAATGGTTTCTTGT
ATGAACCAGAAACTTCTTACATGCCAAACCTACTCAAATAAAGAAGGTCT
CCGGCAGCAACAGTTATTGGCGTTCATCCCAAGACATCACAAGCATTACA
TTTTACCAAATTCTGTGAACAAGAAGGTACATTTTAGTCCACGTGTACCA
ACTGATGCTAGGCAAAATCATTTTTCATCACGTCTTCCACCTACAGGTAT
CCCTGCTTCTAAAACTCCTTCCTGGCATTTAGCCTCTGAAACTAAATCCA
CATCGAAGGGGACTCAGCAGGCTTTGACAAGCTCTGAAGACCGCAAAACT
TCTGGAGTTTTCCATCTGTTGGATAATGAAGAGAATAAGCTGACAAAGTC
CTCTGCTGTCTCTGCTCAATTATCAAGTGGAGGTCCTGCATCTAGTGCAC
TTGTGCAATCGTTCGGTGTTGCACGCAGGGACGCAATGGAGGGTAACAAA
ACTTTGGCACCATTTAGATCATTTGACAACCCAAGGCGTGAGATTGTACC
GTGCCCCCTGTTCCCAGCAAAAGTGTGCCATCAGCCTTTCTTGGTAAACA
GAAAACTTCTAAGCCGAAAGCCGGTTATGTCCCATGAAAACCCTATCACG
GCCAGTCCAAACATGTCCATTAAGACAAACTCGCCCCTCATCTACCCCCC
CCTACGACTTCTCGAATACCCCGCCACCCTACAAGCCCCCCCCCCCCCCA
GACCCCTCCCCACCCACCTGGGTTCACCCCATTACTTGGTTCCCCCTTCC
CCACACCTCTCTTCCCACGCTCGCCTAAACACTTACACTACACGTTTCCT
CAACCTACCCCTAATATCCCCCCCCCCCACCCCCGCCTTCCCCACGTATC
TTCACTCCTCCGCCCATATCCATCACACCACCACCACAACACGAAAGCAA
CCTTACATCATCCCTCACACCCACCGTCCCTTCAACCGTCGGCTCCGCTC
ACACCACCCCTAGTCACCAGATCTCGCCGACCGCCCTCAACCCCCGGTTC
TACTACTCTCACCATACACTAACCCAGCTACTCACCACCCCTATATCTCC
TACCTTCTCACCTCAACCACAATAAACTTAACTAACCTCATCTACACACA
TATAA
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