DY260532

Overview
NameDY260532
Unique NameDY260532
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1230
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260532_ssr1060 microsatellite DY260532_ssr1060:1060..1071. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1577 contig Ccv1_Contig1577:1..1230. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260532 vs. ExPASy Swiss-Prot
Match: GL114_ARATH (Germin-like protein subfamily 1 member 14 OS=Arabidopsis thaliana GN=At5g39110 PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 1.771e-67
Identity = 127/197 (64.47%), Postives = 150/197 (76.14%), Query Frame = 2
Query:  104 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFYSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHFHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNRQFPGEVTIANTVLGAHPSINPHFPGKAFPLNPKTLKDPPKKF 694
            DP  LQD CVAI D K+GVFVNGKFCKDPK A+AEDFFYSGL + G T N++  + T  NV+QIPGLNTLGIS  RIDYAPYGQ PPH HPRA+EI +++EGTLYVGFV+S+Q NN L AKVLN GDVFVFP G+IHFQ NIGKT A A++ L+ Q  G +TIA+TV G+ P INP    +AF L+   +KD   KF
Sbjct:   24 DPSPLQDFCVAIGDLKNGVFVNGKFCKDPKQAKAEDFFYSGLNQAGTTNNKVKSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNVVKDLEAKF 220          
BLAST of DY260532 vs. ExPASy Swiss-Prot
Match: GL117_ARATH (Germin-like protein subfamily 1 member 17 OS=Arabidopsis thaliana GN=At5g39150 PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 2.313e-67
Identity = 127/197 (64.47%), Postives = 151/197 (76.65%), Query Frame = 2
Query:  104 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFYSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHFHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNRQFPGEVTIANTVLGAHPSINPHFPGKAFPLNPKTLKDPPKKF 694
            DP  LQD CVAI+DPK+GVFVNGKFCKDPK A+AEDFF SGL + G T N++  + T  NV+QIPGLNTLGIS  RIDYAPYGQ PPH HPRA+EI +++EGTLYVGFV+S+Q NN L AKVLN GDVFVFP G+IHFQ NIGKT A A++ L+ Q  G +TIA+TV G+ P INP    +AF L+   +KD   KF
Sbjct:   23 DPSPLQDFCVAIDDPKNGVFVNGKFCKDPKQAKAEDFFSSGLNQAGITNNKVQSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNVVKDLEAKF 219          
BLAST of DY260532 vs. ExPASy Swiss-Prot
Match: GL115_ARATH (Germin-like protein subfamily 1 member 15 OS=Arabidopsis thaliana GN=At5g39120 PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 2.313e-67
Identity = 127/197 (64.47%), Postives = 151/197 (76.65%), Query Frame = 2
Query:  104 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFYSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHFHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNRQFPGEVTIANTVLGAHPSINPHFPGKAFPLNPKTLKDPPKKF 694
            DP  LQD CVAI+DPK+GVFVNGKFCKDPK A+AEDFF SGL + G T N++  + T  NV+QIPGLNTLGIS  RIDYAPYGQ PPH HPRA+EI +++EGTLYVGFV+S+Q NN L AKVLN GDVFVFP G+IHFQ NIGKT A A++ L+ Q  G +TIA+TV G+ P INP    +AF L+   +KD   KF
Sbjct:   23 DPSPLQDFCVAIDDPKNGVFVNGKFCKDPKQAKAEDFFSSGLNQAGITNNKVKSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNVVKDLEAKF 219          
BLAST of DY260532 vs. ExPASy Swiss-Prot
Match: GL119_ARATH (Germin-like protein subfamily 1 member 19 OS=Arabidopsis thaliana GN=At5g39180 PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 1.148e-66
Identity = 126/197 (63.96%), Postives = 150/197 (76.14%), Query Frame = 2
Query:  104 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFYSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHFHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNRQFPGEVTIANTVLGAHPSINPHFPGKAFPLNPKTLKDPPKKF 694
            DP  LQD CVAI+DPK+GVFVNGKFCKDPK A+AEDFF SGL + G T N++  + T  NV+QIPGLNTLGIS  RIDYAPYGQ PPH HPRA+EI +++EGTLYVGFV+S+Q NN L AKVLN GDVFVFP G+IHFQ NIGKT A A++ L+ Q  G +TIA+ V G+ P INP    +AF L+   +KD   KF
Sbjct:   23 DPSPLQDFCVAIDDPKNGVFVNGKFCKDPKQAKAEDFFSSGLNQAGITNNKVQSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADIVFGSTPPINPDILAQAFQLDVNVVKDLEAKF 219          
BLAST of DY260532 vs. ExPASy Swiss-Prot
Match: GL113_ARATH (Germin-like protein subfamily 1 member 13 OS=Arabidopsis thaliana GN=GLP6 PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 4.362e-66
Identity = 124/197 (62.94%), Postives = 151/197 (76.65%), Query Frame = 2
Query:  104 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFYSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHFHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNRQFPGEVTIANTVLGAHPSINPHFPGKAFPLNPKTLKDPPKKF 694
            DP  LQD CVAI+D K+GVFVNGKFCKDPK A+AEDFF+SGL + G+T N++  + T  NV+QIPGLNT+GIS  RIDYAPYGQ PPH HPRA+EI +++EGTLYVGFV+S+Q NN L AKVL  GDVFVFP G+IHFQ NIGKT A A++ L+ Q  G +TIA+TV G+ P INP    +AF L+   +KD   KF
Sbjct:   24 DPSPLQDFCVAIDDLKNGVFVNGKFCKDPKQAKAEDFFFSGLNQAGSTNNKVRSNVTTVNVDQIPGLNTMGISLVRIDYAPYGQNPPHTHPRATEILVLIEGTLYVGFVSSNQDNNRLFAKVLYPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNIVKDLEAKF 220          
BLAST of DY260532 vs. ExPASy Swiss-Prot
Match: GL118_ARATH (Germin-like protein subfamily 1 member 18 OS=Arabidopsis thaliana GN=GLP2A PE=2 SV=2)

HSP 1 Score: 247.669 bits (631), Expect = 1.074e-64
Identity = 125/220 (56.82%), Postives = 155/220 (70.45%), Query Frame = 2
Query:   35 MKVIQFLIGFXXXXXXXXXXXXTDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFYSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHFHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNRQFPGEVTIANTVLGAHPSINPHFPGKAFPLNPKTLKDPPKKF 694
            M+V Q L+ F             DP  LQD CVAI+D K GVFVNG+FCKDPK   A+DFF+SGL  PGNT N++G + T  NV+QIPGLNT+GIS  RIDYAP+GQ PPH HPR SEI +++EGTLYVGFV+S+Q NN L AKVL+ GDVFVFP G+IHFQ N+GK  A A++ L+ Q  G +TIANTV G++P I P    +AF L+   +K+   KF
Sbjct:    1 MRVSQSLVPFAIIALVLSFVNAYDPSPLQDFCVAIDDLK-GVFVNGRFCKDPKRVDAKDFFFSGLNMPGNTNNQVGSNVTTVNVDQIPGLNTMGISLVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQVNVGKIPAVAFAGLSSQNAGVITIANTVFGSNPPIYPELLARAFQLDASVVKELQAKF 219          
BLAST of DY260532 vs. ExPASy Swiss-Prot
Match: GL120_ARATH (Germin-like protein subfamily 1 member 20 OS=Arabidopsis thaliana GN=GLP5A PE=1 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 1.403e-64
Identity = 125/220 (56.82%), Postives = 155/220 (70.45%), Query Frame = 2
Query:   35 MKVIQFLIGFXXXXXXXXXXXXTDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFYSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHFHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNRQFPGEVTIANTVLGAHPSINPHFPGKAFPLNPKTLKDPPKKF 694
            M+V Q L+ F             DP  LQD CVAI+D K GVFVNG+FCKDPK   A+DFF+SGL  PGNT N++G + T  NV+QIPGLNT+GIS  RIDYAP+GQ PPH HPR SEI +++EGTLYVGFV+S+Q NN L AKVL+ GDVFVFP G+IHFQ N+GK  A A++ L+ Q  G +TIANTV G++P I P    +AF L+   +K+   KF
Sbjct:    1 MRVSQSLVPFAIIALVLSFVNAYDPSPLQDFCVAIDDLK-GVFVNGRFCKDPKRVDAKDFFFSGLNVPGNTNNQVGSNVTTVNVDQIPGLNTMGISLVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQVNVGKIPAVAFAGLSSQNAGVITIANTVFGSNPPIYPELLARAFQLDASVVKELQAKF 219          
BLAST of DY260532 vs. ExPASy Swiss-Prot
Match: GL116_ARATH (Germin-like protein subfamily 1 member 16 OS=Arabidopsis thaliana GN=At5g39130 PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 2.393e-64
Identity = 126/220 (57.27%), Postives = 155/220 (70.45%), Query Frame = 2
Query:   35 MKVIQFLIGFXXXXXXXXXXXXTDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFYSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHFHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNRQFPGEVTIANTVLGAHPSINPHFPGKAFPLNPKTLKDPPKKF 694
            M+V Q LI F             DP  LQD CVAI+D K GVFVNG+FCKDP+   A+DFF+SGL  PGNT N++G + T  NV+QIPGLNT+GIS  RIDYAP+GQ PPH HPR SEI +++EGTLYVGFV+S+Q NN L AKVL+ GDVFVFP G+IHFQ NIGK  A A++ L+ Q  G +TIANTV G++P I P    +AF L+   +K+   KF
Sbjct:    1 MRVSQSLIPFAIIALVLSFVNAYDPSPLQDFCVAIDDLK-GVFVNGRFCKDPERVDAKDFFFSGLNVPGNTNNQVGSNVTTVNVDQIPGLNTMGISLVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQLNIGKIPAIAFAGLSSQNAGVITIANTVFGSNPPIYPELLARAFQLDANVVKELQAKF 219          
BLAST of DY260532 vs. ExPASy Swiss-Prot
Match: GL18_ARATH (Germin-like protein subfamily 1 member 8 OS=Arabidopsis thaliana GN=GLP9 PE=2 SV=2)

HSP 1 Score: 239.965 bits (611), Expect = 2.240e-62
Identity = 115/222 (51.80%), Postives = 151/222 (68.02%), Query Frame = 2
Query:   29 ITMKVIQFLIGFXXXXXXXXXXXXTDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFYSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHFHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNRQFPGEVTIANTVLGAHPSINPHFPGKAFPLNPKTLKDPPKKF 694
            +T+K + FL               +DP  LQD CV +N P DGVFVNGKFCKDP++  A+DFF+S L +PGNT N +G + T  NV  + GLNTLGIS  RIDYAP GQ PPH HPRA+EI +V +GTL VGF++S+Q  N L AK LN GDVFVFP+GLIHFQFN+G T A A +AL+ Q  G +TIANT+ G+ P ++P+   +AF ++   +++   +F
Sbjct:    1 MTIKSLSFLAALSLFALTLPLVIASDPSPLQDFCVGVNTPADGVFVNGKFCKDPRIVFADDFFFSSLNRPGNTNNAVGSNVTTVNVNNLGGLNTLGISLVRIDYAPNGQNPPHTHPRATEILVVQQGTLLVGFISSNQDGNRLFAKTLNVGDVFVFPEGLIHFQFNLGGTPAVAIAALSSQNAGVITIANTIFGSKPDVDPNVLARAFQMDVNAVRNLQARF 222          
BLAST of DY260532 vs. ExPASy Swiss-Prot
Match: GL17_ARATH (Germin-like protein subfamily 1 member 7 OS=Arabidopsis thaliana GN=At3g05950 PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 2.926e-62
Identity = 118/191 (61.78%), Postives = 143/191 (74.87%), Query Frame = 2
Query:  104 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFYSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHFHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNRQFPGEVTIANTVLGAHPSINPHFPGKAFPLNPKTLK 676
            DP  LQD CVA++D   GVFVNGKFCKDPK  +AEDFF SGL   GNT NR+G + T+ NV++IPGLNTLG+S  RID+AP GQ PPH HPRA+EI +V+EGTL VGFVTS+Q NN L +KVL  GDVFVFP G+IHFQ N+G+TNA A++ L  Q PG +TIA+ V G+ PSI P    KAF L+   +K
Sbjct:   26 DPSPLQDFCVAVDDAS-GVFVNGKFCKDPKYVKAEDFFTSGLNIAGNTINRVGSNVTNVNVDKIPGLNTLGVSLVRIDFAPGGQNPPHTHPRATEILVVVEGTLLVGFVTSNQDNNRLFSKVLYPGDVFVFPIGMIHFQVNVGRTNAVAFAGLGSQNPGTITIADAVFGSKPSIMPEILAKAFQLDVNVVK 215          
The following BLAST results are available for this feature:
BLAST of DY260532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GL114_ARATH1.771e-6764.47Germin-like protein subfamily 1 member 14 OS=Arabi... [more]
GL117_ARATH2.313e-6764.47Germin-like protein subfamily 1 member 17 OS=Arabi... [more]
GL115_ARATH2.313e-6764.47Germin-like protein subfamily 1 member 15 OS=Arabi... [more]
GL119_ARATH1.148e-6663.96Germin-like protein subfamily 1 member 19 OS=Arabi... [more]
GL113_ARATH4.362e-6662.94Germin-like protein subfamily 1 member 13 OS=Arabi... [more]
GL118_ARATH1.074e-6456.82Germin-like protein subfamily 1 member 18 OS=Arabi... [more]
GL120_ARATH1.403e-6456.82Germin-like protein subfamily 1 member 20 OS=Arabi... [more]
GL116_ARATH2.393e-6457.27Germin-like protein subfamily 1 member 16 OS=Arabi... [more]
GL18_ARATH2.240e-6251.80Germin-like protein subfamily 1 member 8 OS=Arabid... [more]
GL17_ARATH2.926e-6261.78Germin-like protein subfamily 1 member 7 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YM20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260532 ID=DY260532; Name=DY260532; organism=Citrus clementina; type=EST; length=1230bp
GTTTGAGATAGGCCTTTCCTGTGACTTAATCACCATGAAGGTAATTCAAT
TTCTTATAGGTTTTGCCCTCTTGGCTTTGGCTTCTTCTTTGGCCTCTGCC
ACTGACCCTGGCCATCTTCAAGATGTCTGTGTAGCCATCAATGACCCCAA
GGATGGTGTGTTTGTGAATGGGAAGTTCTGTAAGGACCCCAAGCTTGCGA
GAGCAGAAGATTTCTTCTACTCAGGGCTAGGCAAGCCTGGAAACACAGCA
AATCGACTTGGTGTTGATGAAACAGATGCCAATGTTGAGCAAATTCCAGG
ACTCAACACCCTTGGCATATCAGCATTCCGCATTGACTATGCCCCATATG
GCCAAAGGCCACCTCACTTTCACCCCCGTGCCAGTGAAATCTTCTTAGTC
CTGGAAGGAACTCTTTATGTCGGTTTTGTGACATCAGACCAACTGAATAA
CACACTCATCGCAAAAGTTCTAAATAAGGGAGATGTTTTTGTGTTTCCAC
AAGGTTTGATTCACTTCCAATTCAACATTGGAAAAACAAATGCAGCTGCT
TATTCTGCTCTAAACCGCCAATTCCCGGGTGAAGTTACCATAGCCAACAC
AGTCCTTGGAGCCCATCCTTCAATCAATCCCCATTTTCCTGGCAAGGCAT
TCCCATTGAATCCAAAGACACTGAAAGATCCTCCAAAAAAGTTCCTTCAT
GGCCATTAACGAGAAGGAATTAATGAACCTTTAATAAAATCGGCCCCCTT
CCCAAAGGGCTTTATTACCCCTACCCCCCAAATACCCTATCCTAACCAAG
GCAAAAACACAACTCCCCCCCCGACCCCCCCCCCCCCCGCCAACCGCTGC
CCAGTCAAACACCCCACATTCCTAATTGCCTTTATTTATACCCCCCCCAC
CCCTTGTCCAAAAAAAAAACAAACACAAACAACCAAACTCCCACCTCCCC
TTCCCCCAGAACATCGCACATACACCCAAGCGCATCCCTAATCCCCTCTT
TCCAAGCCCCAATCCACCCCCCTCACGGATCTGACCGCAACACTAATACA
CTCTTTTACCCTCCTCCTCCTCTCATCTACCCCCTCCTCCTCACATCACT
ACTCTCACCCACTACCCCTCATTCACACTATCTCTTTCCCCTCCCTCCTC
CTCCCCCCCTCTCCACCCTCCTTCCACCCTCCCTCTCCCCCACCTCCCCA
CTCTCCCTCTCACCTTCACCGCGACCCCCC
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