DY260534

Overview
NameDY260534
Unique NameDY260534
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1184
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260534_ssr966 microsatellite DY260534_ssr966:966..977. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY260534 vs. ExPASy Swiss-Prot
Match: RS103_ARATH (40S ribosomal protein S10-3 OS=Arabidopsis thaliana GN=RPS10C PE=2 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 1.634e-46
Identity = 86/97 (88.66%), Postives = 94/97 (96.91%), Query Frame = 2
Query:   59 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 349
            MII E NRKEICKYLF+EGVC+AKKD+NLAKHP IDVPNLQVIKLMQSFKS+EYVRETFAWMHYYW+LTN+GIEFLRTYLNLPS++VPATLKKSAKP
Sbjct:    1 MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKP 97          
BLAST of DY260534 vs. ExPASy Swiss-Prot
Match: RS10_ORYSJ (40S ribosomal protein S10 OS=Oryza sativa subsp. japonica GN=RPS10 PE=2 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 6.209e-46
Identity = 86/97 (88.66%), Postives = 92/97 (94.85%), Query Frame = 2
Query:   59 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 349
            MIIP+KNR EICKYLFQEGV YAKKDYNLAKHP+IDVPNLQVIKLMQSFKS+EYVRETF+W +YYWYLTNDGIE LR YLNLPSEIVPATLKKSA+P
Sbjct:    1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFSWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARP 97          
BLAST of DY260534 vs. ExPASy Swiss-Prot
Match: RS101_ARATH (40S ribosomal protein S10-1 OS=Arabidopsis thaliana GN=RPS10A PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.059e-45
Identity = 84/97 (86.60%), Postives = 93/97 (95.88%), Query Frame = 2
Query:   59 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 349
            MII E NR+EICKYLF+EGVC+AKKD+NL KHP IDVPNLQVIKLMQSFKS+EYVRETFAWMHYYW+LTN+GIEFLRTYLNLPS++VPATLKKSAKP
Sbjct:    1 MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKP 97          
BLAST of DY260534 vs. ExPASy Swiss-Prot
Match: RS102_ARATH (40S ribosomal protein S10-2 OS=Arabidopsis thaliana GN=RPS10B PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 5.091e-40
Identity = 79/98 (80.61%), Postives = 89/98 (90.82%), Query Frame = 2
Query:   59 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 349
            MII E NR+EI KYLF+EGV +AKKD+NL +HP I+ VPNLQVIKLMQSFKS+EYVRETFAWMHYYW+LTN+GI+FLRTYLNLPSEIVPATLKK  KP
Sbjct:    1 MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKP 98          
BLAST of DY260534 vs. ExPASy Swiss-Prot
Match: RS10_SPOFR (40S ribosomal protein S10 OS=Spodoptera frugiperda GN=RpS10 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 3.308e-31
Identity = 62/97 (63.92%), Postives = 81/97 (83.51%), Query Frame = 2
Query:   59 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAK 346
            M++P++NR  I +YLF+EGV  AKKDY+  KHP+++ +PNLQVIK MQS KSR YV+E FAW H+YWYLTN+GIE+LR +L+LP EIVPATLK+S +
Sbjct:    1 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 97          
BLAST of DY260534 vs. ExPASy Swiss-Prot
Match: RS10_LUMRU (40S ribosomal protein S10 OS=Lumbricus rubellus GN=RPS10 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 8.147e-30
Identity = 60/97 (61.86%), Postives = 76/97 (78.35%), Query Frame = 2
Query:   59 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 349
            M++ +KNR  I +YLF+EGV  AKKD++L KH EIDVPNL VI+ MQS  SR YV+E F W HYYWYL N+GI++LR +L+LP EIVPATLK+  +P
Sbjct:    1 MLMSKKNRVMIYEYLFKEGVLVAKKDFHLPKHGEIDVPNLHVIRAMQSLVSRGYVKEQFCWRHYYWYLQNEGIQYLRDFLHLPPEIVPATLKRQTRP 97          
BLAST of DY260534 vs. ExPASy Swiss-Prot
Match: RS10_RAT (40S ribosomal protein S10 OS=Rattus norvegicus GN=Rps10 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 9.008e-29
Identity = 60/97 (61.86%), Postives = 78/97 (80.41%), Query Frame = 2
Query:   59 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKS 340
            M++P+KNR  I + LF+EGV  AKKD ++ KHPE+   +VPNL V+K MQS KSR YV+E FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S
Sbjct:    1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97          
BLAST of DY260534 vs. ExPASy Swiss-Prot
Match: RS10_MOUSE (40S ribosomal protein S10 OS=Mus musculus GN=Rps10 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 9.008e-29
Identity = 60/97 (61.86%), Postives = 78/97 (80.41%), Query Frame = 2
Query:   59 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKS 340
            M++P+KNR  I + LF+EGV  AKKD ++ KHPE+   +VPNL V+K MQS KSR YV+E FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S
Sbjct:    1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97          
BLAST of DY260534 vs. ExPASy Swiss-Prot
Match: RS10_ICTPU (40S ribosomal protein S10 OS=Ictalurus punctatus GN=rps10 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 9.008e-29
Identity = 60/100 (60.00%), Postives = 79/100 (79.00%), Query Frame = 2
Query:   59 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 349
            M++P+KNR  I + LF+EGV  AKKD +LAKHPE+   +VPNL V+K MQS KS  YV+E FAW H+YWYLTN+GI++LR +L+LP EIVPATL++  +P
Sbjct:    1 MLMPKKNRIAIYELLFKEGVMVAKKDVHLAKHPELADKNVPNLHVMKAMQSLKSCGYVKEQFAWRHFYWYLTNEGIQYLRDFLHLPPEIVPATLRRQTRP 100          
BLAST of DY260534 vs. ExPASy Swiss-Prot
Match: RS10_HUMAN (40S ribosomal protein S10 OS=Homo sapiens GN=RPS10 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 9.008e-29
Identity = 60/97 (61.86%), Postives = 78/97 (80.41%), Query Frame = 2
Query:   59 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKS 340
            M++P+KNR  I + LF+EGV  AKKD ++ KHPE+   +VPNL V+K MQS KSR YV+E FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S
Sbjct:    1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97          
The following BLAST results are available for this feature:
BLAST of DY260534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS103_ARATH1.634e-4688.6640S ribosomal protein S10-3 OS=Arabidopsis thalian... [more]
RS10_ORYSJ6.209e-4688.6640S ribosomal protein S10 OS=Oryza sativa subsp. j... [more]
RS101_ARATH1.059e-4586.6040S ribosomal protein S10-1 OS=Arabidopsis thalian... [more]
RS102_ARATH5.091e-4080.6140S ribosomal protein S10-2 OS=Arabidopsis thalian... [more]
RS10_SPOFR3.308e-3163.9240S ribosomal protein S10 OS=Spodoptera frugiperda... [more]
RS10_LUMRU8.147e-3061.8640S ribosomal protein S10 OS=Lumbricus rubellus GN... [more]
RS10_RAT9.008e-2961.8640S ribosomal protein S10 OS=Rattus norvegicus GN=... [more]
RS10_MOUSE9.008e-2961.8640S ribosomal protein S10 OS=Mus musculus GN=Rps10... [more]
RS10_ICTPU9.008e-2960.0040S ribosomal protein S10 OS=Ictalurus punctatus G... [more]
RS10_HUMAN9.008e-2961.8640S ribosomal protein S10 OS=Homo sapiens GN=RPS10... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YM22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260534 ID=DY260534; Name=DY260534; organism=Citrus clementina; type=EST; length=1184bp
CATTCGTTCCTCCCTCAGCTTGACAGAAAGGGCTAAGCTCAATCTTCACT
TCGCAACCATGATTATTCCAGAGAAGAACCGCAAAGAAATCTGCAAGTAC
CTCTTCCAAGAGGGAGTATGCTATGCAAAGAAGGATTATAATCTTGCGAA
GCACCCAGAAATCGATGTTCCAAACCTGCAGGTGATTAAGCTGATGCAGA
GCTTCAAATCTAGGGAGTATGTTCGTGAGACATTTGCGTGGATGCACTAT
TATTGGTACCTTACGAATGATGGGATTGAGTTTTTGAGGACTTACCTCAA
TCTTCCATCAGAAATTGTTCCTGCTACCTTGAAGAAATCCGCTAAGCCAG
CTGGTCGCCCGATGGGTGGACCTGGTGGTGATCGTCCAAGGGGCCCACCT
CGTTTTGATGGAGACCGACCGAGGTTTGGTGACCGTGAAGGGTACCGTGG
TGGTCCCCGTGGTGGTGACTTTGGTGGTGAGAAAGGTGGAGCCCCTGCTG
ATTTCCAGCCCATCCTTCCGGGGTTCTGGTGGAAGACCTGGTTTTGGTCG
CGGAAGTGGAGGCTATGGTGCAGCCCCATCCCGTCACGGACTTCCTTGAA
GTCTCCGCCCGTCTGGCCACTCTCTGGCACGCCCACACTAAGTGTTCCCA
CTCCCTCCGACGAACTCCACGCCCCTCCCTGCCTCTTCCCCGCCGCCCCC
TCCACCCGTTCGCCCCCAAATCTCCCTCTCCCACCCTCACTTCGCCACCT
CCCTTCCACAGCCGCCACTCACATGATTACCAACCCCCCCAGACAACACC
CCATGTTACACAAACACCCAACCCACAAGCCACAACCCTCCCCCACTCCC
CCAACCCCGCTCGCCCACTCCCATACCCACCACCCCCCCCCTCCCTACCC
CACCCTTCACCCCACTCGCTTTCCCTACACCCACAACCTCAAACCTCAAC
CCCCCTCGACCTCCACCACCCACCCACCACGGAACCCCCCTCCTCAACTC
TAAACAACACGCCACGTCCGCATGCACTATCCTCTGCCTTCCCATCGCCA
GATACCTTGTGCACCTCTCCACTACCTCCCGCATCGTTCCCTCCCTAGTC
TCTCCACTCCTTCGTCTCCTTCAACGACCATTCCATACCCTCACACCCAG
CTCCCTGCTAAACACTGTCAACTCCGACCGTCCG
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