DY260542

Overview
NameDY260542
Unique NameDY260542
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1299
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1579 contig Ccv1_Contig1579:1..1299. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY260542 vs. ExPASy Swiss-Prot
Match: RS18_ARATH (40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 4.279e-64
Identity = 117/125 (93.60%), Postives = 121/125 (96.80%), Query Frame = 2 
Query:   68 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSHALDMKLRDDLERLKKIRNHRGLRPLLG 442
            VANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVS+ALDMKLRDDLERLKKIRNHRGLR   G
Sbjct:    4 VANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWG 128

HSP 2 Score: 31.187 bits (69), Expect = 4.279e-64
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 3 
Query:  432 HYWGLRVRGQH 464
            HYWGLRVRGQH
Sbjct:  125 HYWGLRVRGQH 135
[Close]
BLAST of DY260542 vs. ExPASy Swiss-Prot
Match: RS18_BRABE (40S ribosomal protein S18 OS=Branchiostoma belcheri GN=RPS18 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 1.287e-50
Identity = 90/125 (72.00%), Postives = 110/125 (88.00%), Query Frame = 2 
Query:   68 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSHALDMKLRDDLERLKKIRNHRGLRPLLG 442
            V  E FQHILRV+NTN+DG++KIMFALTSIKG+GRR +NIVCKKAD+D++KRAGELS  E++ L+ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++++LD KLR+DLERLKKIR HRGLR   G
Sbjct:    4 VIPEKFQHILRVMNTNIDGRRKIMFALTSIKGVGRRYSNIVCKKADIDLSKRAGELSDEEVERLITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVMANSLDNKLREDLERLKKIRAHRGLRHYWG 128

HSP 2 Score: 31.187 bits (69), Expect = 1.287e-50
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 3 
Query:  432 HYWGLRVRGQH 464
            HYWGLRVRGQH
Sbjct:  125 HYWGLRVRGQH 135
[Close]
BLAST of DY260542 vs. ExPASy Swiss-Prot
Match: RS18_AEQIR (40S ribosomal protein S18 OS=Aequipecten irradians GN=RPS18 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 2.850e-50
Identity = 89/122 (72.95%), Postives = 109/122 (89.34%), Query Frame = 2 
Query:   77 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSHALDMKLRDDLERLKKIRNHRGLRPLLG 442
            E FQHILRV+NTN+DGK+KIMFA+T+IKG+GRR AN+VCKKADVD+ KRAGELS  E++ ++ +++NPRQ+KIP+WFLNRQKD KDGKYSQV+S+ALD KLR+DLERLKKIR HRGLR   G
Sbjct:    7 EKFQHILRVMNTNIDGKRKIMFAMTAIKGMGRRYANVVCKKADVDITKRAGELSEDEIERVITIMSNPRQYKIPNWFLNRQKDVKDGKYSQVMSNALDNKLREDLERLKKIRAHRGLRHYWG 128

HSP 2 Score: 31.187 bits (69), Expect = 2.850e-50
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 3 
Query:  432 HYWGLRVRGQH 464
            HYWGLRVRGQH
Sbjct:  125 HYWGLRVRGQH 135
[Close]
BLAST of DY260542 vs. ExPASy Swiss-Prot
Match: RS18_CHLRE (40S ribosomal protein S18 OS=Chlamydomonas reinhardtii GN=RPS18 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.648e-47
Identity = 85/125 (68.00%), Postives = 104/125 (83.20%), Query Frame = 2 
Query:   68 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSHALDMKLRDDLERLKKIRNHRGLRPLLG 442
            V  +DFQHILR+LNTNVDGK KIM+A+T+I+GIGRR +N+VCKKA+VD+ K AGE SA EL+ +M +VANPR +KIPDWFLNRQKD+K G++SQ+ S  LD  +RDDLERLKKIR HRGLR   G
Sbjct:    5 VQGDDFQHILRLLNTNVDGKNKIMYAMTAIRGIGRRFSNLVCKKAEVDLRKAAGECSADELERMMGIVANPRAYKIPDWFLNRQKDHKTGRFSQLTSSQLDTVMRDDLERLKKIRGHRGLRHYWG 129

HSP 2 Score: 31.187 bits (69), Expect = 1.648e-47
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 3 
Query:  432 HYWGLRVRGQH 464
            HYWGLRVRGQH
Sbjct:  126 HYWGLRVRGQH 136
[Close]
BLAST of DY260542 vs. ExPASy Swiss-Prot
Match: RS18_DANRE (40S ribosomal protein S18 OS=Danio rerio GN=rps18 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.649e-47
Identity = 84/125 (67.20%), Postives = 107/125 (85.60%), Query Frame = 2 
Query:   68 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSHALDMKLRDDLERLKKIRNHRGLRPLLG 442
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+NKRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV+++ LD KLR+DLERLKKIR HRGLR   G
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLNKRAGELTEDEVERVVTIMQNPRQYKIPDWFLNRQKDIKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWG 128

HSP 2 Score: 29.6462 bits (65), Expect = 3.649e-47
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 3 
Query:  432 HYWGLRVRGQH 464
            H+WGLRVRGQH
Sbjct:  125 HFWGLRVRGQH 135
[Close]
BLAST of DY260542 vs. ExPASy Swiss-Prot
Match: RS18_ICTPU (40S ribosomal protein S18 OS=Ictalurus punctatus GN=rps18 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.372e-46
Identity = 83/125 (66.40%), Postives = 107/125 (85.60%), Query Frame = 2 
Query:   68 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSHALDMKLRDDLERLKKIRNHRGLRPLLG 442
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D++KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV+++ LD KLR+DLERLKKIR HRGLR   G
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLSKRAGELTEDEVERVVTIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWG 128

HSP 2 Score: 29.6462 bits (65), Expect = 1.372e-46
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 3 
Query:  432 HYWGLRVRGQH 464
            H+WGLRVRGQH
Sbjct:  125 HFWGLRVRGQH 135
[Close]
BLAST of DY260542 vs. ExPASy Swiss-Prot
Match: RS18_RAT (40S ribosomal protein S18 OS=Rattus norvegicus GN=Rps18 PE=1 SV=3)

HSP 1 Score: 179.104 bits (453), Expect = 1.789e-46
Identity = 83/125 (66.40%), Postives = 106/125 (84.80%), Query Frame = 2 
Query:   68 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSHALDMKLRDDLERLKKIRNHRGLRPLLG 442
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV+++ LD KLR+DLERLKKIR HRGLR   G
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWG 128

HSP 2 Score: 29.6462 bits (65), Expect = 1.789e-46
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 3 
Query:  432 HYWGLRVRGQH 464
            H+WGLRVRGQH
Sbjct:  125 HFWGLRVRGQH 135
[Close]
BLAST of DY260542 vs. ExPASy Swiss-Prot
Match: RS18_PIG (40S ribosomal protein S18 OS=Sus scrofa GN=RPS18 PE=2 SV=3)

HSP 1 Score: 179.104 bits (453), Expect = 1.789e-46
Identity = 83/125 (66.40%), Postives = 106/125 (84.80%), Query Frame = 2 
Query:   68 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSHALDMKLRDDLERLKKIRNHRGLRPLLG 442
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV+++ LD KLR+DLERLKKIR HRGLR   G
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWG 128

HSP 2 Score: 29.6462 bits (65), Expect = 1.789e-46
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 3 
Query:  432 HYWGLRVRGQH 464
            H+WGLRVRGQH
Sbjct:  125 HFWGLRVRGQH 135
[Close]
BLAST of DY260542 vs. ExPASy Swiss-Prot
Match: RS18_MOUSE (40S ribosomal protein S18 OS=Mus musculus GN=Rps18 PE=2 SV=3)

HSP 1 Score: 179.104 bits (453), Expect = 1.789e-46
Identity = 83/125 (66.40%), Postives = 106/125 (84.80%), Query Frame = 2 
Query:   68 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSHALDMKLRDDLERLKKIRNHRGLRPLLG 442
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV+++ LD KLR+DLERLKKIR HRGLR   G
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWG 128

HSP 2 Score: 29.6462 bits (65), Expect = 1.789e-46
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 3 
Query:  432 HYWGLRVRGQH 464
            H+WGLRVRGQH
Sbjct:  125 HFWGLRVRGQH 135
[Close]
BLAST of DY260542 vs. ExPASy Swiss-Prot
Match: RS18_HUMAN (40S ribosomal protein S18 OS=Homo sapiens GN=RPS18 PE=1 SV=3)

HSP 1 Score: 179.104 bits (453), Expect = 1.789e-46
Identity = 83/125 (66.40%), Postives = 106/125 (84.80%), Query Frame = 2 
Query:   68 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSHALDMKLRDDLERLKKIRNHRGLRPLLG 442
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV+++ LD KLR+DLERLKKIR HRGLR   G
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWG 128

HSP 2 Score: 29.6462 bits (65), Expect = 1.789e-46
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 3 
Query:  432 HYWGLRVRGQH 464
            H+WGLRVRGQH
Sbjct:  125 HFWGLRVRGQH 135
The following BLAST results are available for this feature:
BLAST of DY260542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
RS18_ARATH4.279e-6493.6040S ribosomal protein S18 OS=Arabidopsis thaliana ... [more]
RS18_BRABE1.287e-5072.0040S ribosomal protein S18 OS=Branchiostoma belcher... [more]
RS18_AEQIR2.850e-5072.9540S ribosomal protein S18 OS=Aequipecten irradians... [more]
RS18_CHLRE1.648e-4768.0040S ribosomal protein S18 OS=Chlamydomonas reinhar... [more]
RS18_DANRE3.649e-4767.2040S ribosomal protein S18 OS=Danio rerio GN=rps18 ... [more]
RS18_ICTPU1.372e-4666.4040S ribosomal protein S18 OS=Ictalurus punctatus G... [more]
RS18_RAT1.789e-4666.4040S ribosomal protein S18 OS=Rattus norvegicus GN=... [more]
RS18_PIG1.789e-4666.4040S ribosomal protein S18 OS=Sus scrofa GN=RPS18 P... [more]
RS18_MOUSE1.789e-4666.4040S ribosomal protein S18 OS=Mus musculus GN=Rps18... [more]
RS18_HUMAN1.789e-4666.4040S ribosomal protein S18 OS=Homo sapiens GN=RPS18... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YN09FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260542 ID=DY260542; Name=DY260542; organism=Citrus clementina; type=EST; length=1299bp
GCTTCATCTGTCGCCGAAGAGCCTCTCTTCTCTTCATCATCAATCCTCAC
AATCGAAAATGTCTCTGGTGGCGAACGAAGATTTTCAGCACATTTTGCGT
GTGCTGAACACTAACGTCGACGGGAAGCAGAAGATTATGTTTGCTCTTAC
TTCAATTAAGGGTATTGGAAGGCGACTGGCTAACATCGTTTGCAAGAAAG
CTGATGTTGACATGAACAAGAGGGCCGGTGAACTATCTGCTGCTGAACTT
GACAATCTCATGGTCGTTGTTGCAAATCCCCGACAGTTTAAAATCCCTGA
TTGGTTCTTGAACAGACAGAAGGATTACAAGGATGGAAAGTATTCTCAGG
TTGTATCCCATGCACTGGACATGAAGTTGAGAGATGACTTGGAGCGTCTG
AAGAAGATCAGGAACCACCGTGGTCTCAGGCCACTACTGGGGTCTTCGTG
TCCGTGGACAACACACCAAGACCACCGGCCGTCGTGGAAAGACTGTTGGT
GTCCCCCAGAACCGTTGAGCTGTCCTTTATCCATGGTTTGAACAATCTAT
ACCCCTGTTCAGGAAGACTTCGGACCTGCTCATGCAGAAACCTCGACTCC
AAACCAACTAAATCTATATCTCTTTCTCTGGAAGGGTTTTAAACCCATTG
ACCAGCCCGTCCCTAACCCCTTCCTTCCCCCTCTGGCAAAATACTCCACT
CATACCCTCCCCACCACCCATACCACCGTGCCCCCTTCTCTCTTCTCTAT
ACTAACCCCTCCCAACCCATTCCCATCCTCCTCTACCACCACCCACACCG
CAAACACCAGCTACCCCTTCACCCCCTCCATGCCCCCACACCCCGCTCCC
ACACCCGCACCACAAACGACTTACCCGCCGACAATACCAACCCAAAACCC
CACAATACCATCTTCACACCGCCACACACCCACTTCCCCCCCTCTCCCCC
CCCACCCACCCCTCCCGCCCTCATCCACCAATCCAGGTTCAACTCTCCAC
CCACCATTACTATCTTCCCACCACTCCCCCTCATATCCTCAATTCCTAAC
CTATAGCCAACCACCCATCGCTATGGTACGTCCACCCGTCCACTCACCTA
CCCACCACCCCCCCTCTACCCCCCTCAACCCCTACCTACCCACCCTTCCT
TCCCGAACAGCAGCACTGCCGCCACGAGCCCCGTCACACTGTACCCCCTC
CCGCCCTACCCTCCAGACCAGCGCCTCCCCCCACCAACACTCCCCCCACC
ACCTTAACCTGCCATAAATAACTGTCCCAGCTTACCCTCTTGCAACCCG
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