DY260553

Overview
NameDY260553
Unique NameDY260553
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1137
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260553 vs. ExPASy Swiss-Prot
Match: PSY_DAUCA (Phytoene synthase, chloroplastic OS=Daucus carota GN=PSY PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 7.721e-22
Identity = 51/80 (63.75%), Postives = 59/80 (73.75%), Query Frame = 1
Query:    1 DEWRPFMKEQITRARYFYQLAEEGASELDIASRWPVWTVLILYQKILDAIPDNDYDNLTKRAYVGNIKKLFLVRQAYYRA 240
            D+WR FMK QI RAR F+  AE+G +EL  ASRWPVW  L+LY++ILDAI  NDYDN TKRAYVG  KKL  +  AY RA
Sbjct:  311 DKWRSFMKGQIKRARMFFDEAEKGVAELSSASRWPVWASLLLYKQILDAIEANDYDNFTKRAYVGKAKKLVSLPLAYSRA 390          
BLAST of DY260553 vs. ExPASy Swiss-Prot
Match: PSY_CUCME (Phytoene synthase, chloroplastic OS=Cucumis melo GN=PSY PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.902e-20
Identity = 48/80 (60.00%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    1 DEWRPFMKEQITRARYFYQLAEEGASELDIASRWPVWTVLILYQKILDAIPDNDYDNLTKRAYVGNIKKLFLVRQAYYRA 240
            D+WR FMK QI RAR F+  AE+G  EL+ ASRWPVW  L+LY++ILD I  NDYDN TKRAYV   KK+  +  AY RA
Sbjct:  338 DKWRNFMKNQIKRARMFFDEAEKGVLELNKASRWPVWASLLLYRQILDEIEANDYDNFTKRAYVSKAKKILALPMAYGRA 417          
BLAST of DY260553 vs. ExPASy Swiss-Prot
Match: PSY_ARATH (Phytoene synthase, chloroplastic OS=Arabidopsis thaliana GN=PSY1 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 4.237e-20
Identity = 45/80 (56.25%), Postives = 59/80 (73.75%), Query Frame = 1
Query:    1 DEWRPFMKEQITRARYFYQLAEEGASELDIASRWPVWTVLILYQKILDAIPDNDYDNLTKRAYVGNIKKLFLVRQAYYRA 240
            D+WR FMK Q+ RAR F+  AE+G +EL  ASRWPVW  L+LY++ILD I  NDY+N TKRAYVG +KK+  +  AY ++
Sbjct:  332 DKWRNFMKMQLKRARMFFDEAEKGVTELSAASRWPVWASLLLYRRILDEIEANDYNNFTKRAYVGKVKKIAALPLAYAKS 411          
BLAST of DY260553 vs. ExPASy Swiss-Prot
Match: PSY_NARPS (Phytoene synthase, chloroplastic OS=Narcissus pseudonarcissus GN=PSY PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 5.533e-20
Identity = 50/95 (52.63%), Postives = 63/95 (66.32%), Query Frame = 1
Query:    1 DEWRPFMKEQITRARYFYQLAEEGASELDIASRWPVWTVLILYQKILDAIPDNDYDNLTKRAYVGNIKKLFLVRQAY---------YRAPSISTA 258
            D+WR FMK QI RAR F++ AE+G +EL  ASRWPVW  L+LY++ILD I  NDY+N TKRAYV  +K+L  +  AY          R PS+S A
Sbjct:  329 DKWRSFMKRQIKRARTFFEQAEKGVTELSQASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKVKRLAALPLAYGKSLLIPLSLRPPSLSKA 423          
BLAST of DY260553 vs. ExPASy Swiss-Prot
Match: PSY_MAIZE (Phytoene synthase, chloroplastic OS=Zea mays GN=Y1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.587e-19
Identity = 46/77 (59.74%), Postives = 55/77 (71.43%), Query Frame = 1
Query:    1 DEWRPFMKEQITRARYFYQLAEEGASELDIASRWPVWTVLILYQKILDAIPDNDYDNLTKRAYVGNIKKLFLVRQAY 231
            + WR FMK QI RAR F++ AE G +EL  ASRWPVW  L+LY++ILD I  NDY+N TKRAYVG  KKL  +  AY
Sbjct:  319 NRWRNFMKRQIKRARMFFEEAERGVNELSQASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVGKGKKLLALPVAY 395          
BLAST of DY260553 vs. ExPASy Swiss-Prot
Match: PSY1_SOLLC (Phytoene synthase 1, chloroplastic OS=Solanum lycopersicum GN=PSY1 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 7.990e-19
Identity = 49/89 (55.06%), Postives = 62/89 (69.66%), Query Frame = 1
Query:    1 DEWRPFMKEQITRARYFYQLAEEGASELDIASRWPVWTVLILYQKILDAIPDNDYDNLTKRAYVGNIKKLFLVRQAYYRA--PSISTAT 261
            D+WR FMK+QI RAR F+  AE+G +EL  ASR+PVW  L+LY+KILD I  NDY+N TKRAYV   KKL  +  AY ++  P   TA+
Sbjct:  321 DKWRIFMKKQIHRARKFFDEAEKGVTELSSASRFPVWASLVLYRKILDEIEANDYNNFTKRAYVSKSKKLIALPIAYAKSLVPPTKTAS 409          
BLAST of DY260553 vs. ExPASy Swiss-Prot
Match: PSY_CAPAN (Phytoene synthase, chloroplastic OS=Capsicum annuum GN=PSY1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.780e-18
Identity = 48/87 (55.17%), Postives = 60/87 (68.97%), Query Frame = 1
Query:    1 DEWRPFMKEQITRARYFYQLAEEGASELDIASRWPVWTVLILYQKILDAIPDNDYDNLTKRAYVGNIKKLFLVRQAYYRAPSISTAT 261
            D+WR FMK+QI RAR F+  AE+G +EL  ASRWPV   L+LY++ILD I  NDY+N TKRAYV   KKL  +  AY ++   ST T
Sbjct:  333 DKWRIFMKKQIQRARKFFDEAEKGVTELSAASRWPVLASLLLYRRILDEIEANDYNNFTKRAYVSKPKKLIALPIAYAKSLVPSTRT 419          
BLAST of DY260553 vs. ExPASy Swiss-Prot
Match: PSY2_SOLLC (Phytoene synthase 2, chloroplastic (Fragment) OS=Solanum lycopersicum GN=PSY2 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.965e-18
Identity = 46/80 (57.50%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    1 DEWRPFMKEQITRARYFYQLAEEGASELDIASRWPVWTVLILYQKILDAIPDNDYDNLTKRAYVGNIKKLFLVRQAYYRA 240
            D+WR FMK+QI RAR F+  AE+G +EL  ASRWPV   L+LY+KILD I  NDY+N T+RAYV   KKL  +  AY R+
Sbjct:  217 DKWRIFMKKQIQRARKFFDEAEKGVTELSSASRWPVLASLLLYRKILDEIEANDYNNFTRRAYVSKPKKLLTLPIAYARS 296          
BLAST of DY260553 vs. ExPASy Swiss-Prot
Match: CRTY_SPIPL (Phytoene synthase OS=Spirulina platensis GN=crtB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 9.142e-15
Identity = 41/80 (51.25%), Postives = 51/80 (63.75%), Query Frame = 1
Query:    1 DEWRPFMKEQITRARYFYQLAEEGASELDIASRWPVWTVLILYQKILDAIPDNDYDNLTKRAYVGNIKKLFLVRQAYYRA 240
            + WR  M+ QI RAR FY LAEEG + L    RWPVWT L+LY++ILD I  N+YD   +RAYV   KK+  +  A  RA
Sbjct:  227 ERWRELMRFQIQRARKFYTLAEEGIAALHPDIRWPVWTALMLYRQILDEIERNEYDVFNQRAYVPTWKKMMCLPLAQLRA 306          
BLAST of DY260553 vs. ExPASy Swiss-Prot
Match: CRTB_SYNY3 (Phytoene synthase OS=Synechocystis sp. (strain PCC 6803) GN=crtB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.739e-14
Identity = 38/80 (47.50%), Postives = 52/80 (65.00%), Query Frame = 1
Query:    1 DEWRPFMKEQITRARYFYQLAEEGASELDIASRWPVWTVLILYQKILDAIPDNDYDNLTKRAYVGNIKKLFLVRQAYYRA 240
            D WR  MK +I RAR++++ AE G   L+  +RWPVWT L+LY+ ILD I  N+Y+   +RAYV   KKL  +  A+ RA
Sbjct:  255 DRWRSLMKFEIDRARHYFEDAERGIRALNRDARWPVWTALMLYKGILDVIEANNYNVFNRRAYVPTPKKLLYLPVAWLRA 334          
The following BLAST results are available for this feature:
BLAST of DY260553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PSY_DAUCA7.721e-2263.75Phytoene synthase, chloroplastic OS=Daucus carota ... [more]
PSY_CUCME1.902e-2060.00Phytoene synthase, chloroplastic OS=Cucumis melo G... [more]
PSY_ARATH4.237e-2056.25Phytoene synthase, chloroplastic OS=Arabidopsis th... [more]
PSY_NARPS5.533e-2052.63Phytoene synthase, chloroplastic OS=Narcissus pseu... [more]
PSY_MAIZE3.587e-1959.74Phytoene synthase, chloroplastic OS=Zea mays GN=Y1... [more]
PSY1_SOLLC7.990e-1955.06Phytoene synthase 1, chloroplastic OS=Solanum lyco... [more]
PSY_CAPAN1.780e-1855.17Phytoene synthase, chloroplastic OS=Capsicum annuu... [more]
PSY2_SOLLC3.965e-1857.50Phytoene synthase 2, chloroplastic (Fragment) OS=S... [more]
CRTY_SPIPL9.142e-1551.25Phytoene synthase OS=Spirulina platensis GN=crtB P... [more]
CRTB_SYNY37.739e-1447.50Phytoene synthase OS=Synechocystis sp. (strain PCC... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YO02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260553 ID=DY260553; Name=DY260553; organism=Citrus clementina; type=EST; length=1137bp
GATGAATGGAGACCTTTCATGAAAGAGCAAATTACAAGAGCAAGATATTT
CTACCAGCTAGCAGAAGAGGGGGCTTCAGAGCTTGACATTGCTAGCCGAT
GGCCGGTGTGGACAGTCTTGATATTGTATCAAAAAATCTTGGATGCCATA
CCAGATAATGACTATGACAACTTGACAAAGAGAGCCTATGTTGGAAACAT
TAAAAAGCTTTTCTTGGTGCGACAGGCATACTATAGAGCTCCATCAATTT
CAACAGCTACGTATTAATTATTTTATTCCAATTTTTCTTACCCATTGTTT
TAAGAAGATAATACAGGAAAACCTAGGGATTTAGCATATTATTTACAAGC
CCCCATACTCATATCATGTTGAGGCAGCCCTACCCGCATTCCATCCCCCG
ACCATGTATTAAATTCTGTATACGTCCATTGTACTAAGAAATATATCGAT
TTATCCTCATTTGCAACAGACACACACAACTACACCCCCCCTTCTTCGAA
CCCTGTCGGCCCCACCAAAACGCCTTGCCTCCCCCCTTGCTGCCCCGAAC
AGCGCCCTAACCCGTCAAAATAAACCCCTTTCTTTGCCCTCCCGCACGAC
TCCCCCCGCTACTGGATTTATCCAACAACGACCACCACCCCTTAGCGGCC
CCTCTGCGCCAGTGGGTCACAACCCTTGCGACCTAACCCTCCCCCCGCCC
CCCCCGCCTCCATTCCGGTCCACCCCACCACCCCCACATCCCCACCCACC
GCTCCCCTCCTCCTCCCCCCCCCACCCCCCCACACCACCACCTTCCGCCA
CCCCCCCCCCACCCGCCCACCGCCCCACCCCCCCCCATCCCACCTCCCCC
TTAAGGAAACGCACCTCCGCGTTTCTCCCCCCCCCTCCCACTTGCTCCCC
GCTCCCATCCCACTCACCCTCTCCCCCCCCCCAGCCCCCCAACTCCCCCC
CGCCGCGGCATCCTACGCCCCGCTCCCTCCTATTTCCCCCTCACCACCTC
CGTGCCAACGCCGCCGTCTCCCCCTCTACTTCACCTCTGCCTGGGTACCC
AGCCTCCCTTCCACCAACTAACTCCCTCTCCATCCCCTTCGCCCCACCCT
TCCCCCTCATCTCCTCCCTCCCCCTCCCACCCCCCCC
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