DY260558

Overview
NameDY260558
Unique NameDY260558
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1259
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14672 contig Ccv1_Contig14672:369..1627. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY260558 vs. ExPASy Swiss-Prot
Match: Y5161_ARATH (Uncharacterized protein At5g01610 OS=Arabidopsis thaliana GN=At5g01610 PE=1 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 2.218e-16
Identity = 25/47 (53.19%), Postives = 38/47 (80.85%), Query Frame = 3 
Query:   87 RPKFMLWLKVTTIASEGAKLHFTVGMRKTRDRAAYEVLRDGLTVDNF 227
            + K M+W+KVT+I+++ +K++FT GM+K+R R AYEV R+GL VD F
Sbjct:  124 KTKVMIWVKVTSISTDASKVYFTAGMKKSRSRDAYEVQRNGLRVDKF 170

HSP 2 Score: 47.7506 bits (112), Expect = 2.218e-16
Identity = 20/30 (66.67%), Postives = 26/30 (86.67%), Query Frame = 2 
Query:    2 YRDKSLLRFSTTVTGYLEKGKFVDIVGIKT 91
            Y+D S+L+F+TTVTG+LEKGK  D+ GIKT
Sbjct:   96 YKDSSVLKFTTTVTGHLEKGKLTDVEGIKT 125
The following BLAST results are available for this feature:
BLAST of DY260558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5161_ARATH2.218e-1653.19Uncharacterized protein At5g01610 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP12YO07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260558 ID=DY260558; Name=DY260558; organism=Citrus clementina; type=EST; length=1259bp
CTACAGGGACAAGTCCTTATTGCGCTTTTCTACTACTGTCACTGGGTATC
TGGAGAAAGGAAAGTTTGTTGATATAGTGGGTATCAAGACCTAAATTTAT
GCTTTGGCTAAAAGTGACCACCATCGCATCTGAAGGAGCGAAGCTTCACT
TCACAGTCGGAATGAGAAAGACCAGAGATAGGGCGGCTTATGAGGTACTT
AGGGATGGACTAACCGTGGATAACTTCTGAAATGGTTTGAATGTTTGTGA
GGTAAGTGTTAGATTGTCATGATCTGTAACTCTTATCATACCATGTGATT
CCTTGTGCTAGCCCCCGTGATTAGTTGCCGTAAGTGCGCAGAACCGTTGA
CCACTTTATCACTTGGGCCCTGTGAACTATTGGTTAGTTGCCATGACGGC
ATTGCATATGTCGCCTTGTTCGGCGTCCTTATAACAATCCCATGCCCCCC
CGATCATCACACTCCCCCCCTAAATGCAAGAGAACATCCCACACCAAGAG
TGGGGTCCCTAAGACACTACACCCACCAGAAGAACCTGTCCCACAAAACC
CACCCTACCTAACTTACCACCCTCTCCCCCCCTACACACCCCTGCTCCTT
TGTTACTATCTTCTCTGACATTTCACTTCCCGTTTCTAGTCAATCAACAG
AACACCGCCGAACTGCTTGTTATGTGTACATATTTAATTCCATACACAAC
CCGACCCATTCTCCATCCACCTCACATCCTCCTCCCTCTCCTTACCGATC
CACCATTCTCCTCCCCCACCCCCAACATCCCCCCAACCACCCCACCCCAC
ACCTACCCGACCACCCCAACTATCACCCCACTTCTCCCCTCCACGTCACT
CTCACCCACCTCTTCCTCACCTCCTCACTCTCCACCAACAAACCAACAAA
CCCTCGTCCGTATACCCAGCACCCCGTGCACCCCCCAATCTCGTCGCCAC
CCCATTCCGCTACTCTAGCCCCTGTACCGTTCCTCTTACACTCCATACAC
TCCCCGCCGGCCATCCTTTATCTCTCCCCCCACGTCTCCAACCTCCCTCC
CCACCCCTTTCCTCGCCCCCCTTCCCCTTCCTCCCCCTCCCCCCCCCCCA
CCCCCTCTCTCCCCTCCACCCCTCCCCTCTCCATCCCCCTCACCCTCCCG
CTCACCTCCCTAAAAAAACCCCCCAACACCTAACCCACCAAACCACCACG
CTCCCACCATCACCTCGCACCATCTACAGCATTGTACACGTTGAACCTAT
ACTCTACGC
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