DY260562

Overview
NameDY260562
Unique NameDY260562
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1234
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260562 vs. ExPASy Swiss-Prot
Match: PSD7_ARATH (Probable 26S proteasome non-ATPase regulatory subunit 7 OS=Arabidopsis thaliana GN=RPN8 PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 4.519e-71
Identity = 130/155 (83.87%), Postives = 142/155 (91.61%), Query Frame = 3
Query:   39 MDVIKTPPISSRPIEKVLVHPLVLLSIVHNYHRVPQDTRKRVVGVLLGSSFKGTVDVSHSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENA 503
            MDVIKT  IS+R IEKV+VHPLVLLSIV +Y+RV +D+ KRVVGVLLGSS +G VDV++SYAVPFEEDDKDP IWFLDHNYHESM+ MFKRINAKEHVVGWYSTGPKLRENDLD+H LF+ YVPNPVLVIIDVQPKELGIPTKAYY VEEVKENA
Sbjct:    1 MDVIKTQQISARTIEKVVVHPLVLLSIVDHYNRVAKDSSKRVVGVLLGSSSRGVVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFHMFKRINAKEHVVGWYSTGPKLRENDLDVHALFNGYVPNPVLVIIDVQPKELGIPTKAYYAVEEVKENA 155          
BLAST of DY260562 vs. ExPASy Swiss-Prot
Match: PSD7_DICDI (26S proteasome non-ATPase regulatory subunit 7 OS=Dictyostelium discoideum GN=psmD7 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 3.977e-51
Identity = 91/137 (66.42%), Postives = 116/137 (84.67%), Query Frame = 3
Query:   90 LVHPLVLLSIVHNYHRVPQDTRKRVVGVLLGSSFKGTVDVSHSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKEN 500
            +VHP VLLS+V +Y+RV +DT KRVVG LLGS+ KG VDVS+ Y +PFEED+ +P IWFLDHN+HE+M++MFK+INA+E+VVGWYSTGPK+R  D DI++LF  Y PNPV+VIIDV PKELGIPTK+Y  VEE+ ++
Sbjct:    9 IVHPTVLLSVVDHYNRVAKDTNKRVVGALLGSNNKGVVDVSNCYGLPFEEDEANPNIWFLDHNFHENMFAMFKKINARENVVGWYSTGPKIRPADQDINELFRRYTPNPVMVIIDVAPKELGIPTKSYVTVEEINKD 145          
BLAST of DY260562 vs. ExPASy Swiss-Prot
Match: PSD7_MOUSE (26S proteasome non-ATPase regulatory subunit 7 OS=Mus musculus GN=Psmd7 PE=1 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 2.258e-46
Identity = 86/142 (60.56%), Postives = 117/142 (82.39%), Query Frame = 3
Query:   78 IEKVLVHPLVLLSIVHNYHRVPQ-DTRKRVVGVLLGSSFKGTVDVSHSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKEN 500
            ++KV+VHPLVLLS+V +++R+ +   +KRVVGVLLGS  K  +DVS+S+AVPF+EDDKD  +WFLDH+Y E+MY MFK++NA+E +VGWY TGPKL +ND+ I++L   Y PN VLVIIDV+PK+LG+PT+AY  VEEV ++
Sbjct:    6 VQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDD 147          
BLAST of DY260562 vs. ExPASy Swiss-Prot
Match: PSD7_HUMAN (26S proteasome non-ATPase regulatory subunit 7 OS=Homo sapiens GN=PSMD7 PE=1 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 2.258e-46
Identity = 86/142 (60.56%), Postives = 117/142 (82.39%), Query Frame = 3
Query:   78 IEKVLVHPLVLLSIVHNYHRVPQ-DTRKRVVGVLLGSSFKGTVDVSHSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKEN 500
            ++KV+VHPLVLLS+V +++R+ +   +KRVVGVLLGS  K  +DVS+S+AVPF+EDDKD  +WFLDH+Y E+MY MFK++NA+E +VGWY TGPKL +ND+ I++L   Y PN VLVIIDV+PK+LG+PT+AY  VEEV ++
Sbjct:    6 VQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDD 147          
BLAST of DY260562 vs. ExPASy Swiss-Prot
Match: PSD7_BOVIN (26S proteasome non-ATPase regulatory subunit 7 OS=Bos taurus GN=PSMD7 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 2.258e-46
Identity = 86/142 (60.56%), Postives = 117/142 (82.39%), Query Frame = 3
Query:   78 IEKVLVHPLVLLSIVHNYHRVPQ-DTRKRVVGVLLGSSFKGTVDVSHSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKEN 500
            ++KV+VHPLVLLS+V +++R+ +   +KRVVGVLLGS  K  +DVS+S+AVPF+EDDKD  +WFLDH+Y E+MY MFK++NA+E +VGWY TGPKL +ND+ I++L   Y PN VLVIIDV+PK+LG+PT+AY  VEEV ++
Sbjct:    6 VQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDD 147          
BLAST of DY260562 vs. ExPASy Swiss-Prot
Match: RPN8_NEUCR (26S proteasome regulatory subunit rpn-8 OS=Neurospora crassa GN=rpn-8 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 3.261e-45
Identity = 86/140 (61.43%), Postives = 111/140 (79.29%), Query Frame = 3
Query:   87 VLVHPLVLLSIVHNYHRVP--QDTRKRVVGVLLGSSFKGTVDVSHSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKEN 500
            V V PLVLLS+V +Y+R    +   KRVVGVLLG +    V VS+S+AVPFEEDDKDP +WFLDHNY ESM  MFK++NA+E ++GWY +GPKLR +DLDI++LF  Y PNP+LVI+DVQPKE G+PT AY+ V+E+K++
Sbjct:   16 VSVAPLVLLSVVDHYNRTQANKSKSKRVVGVLLGQNDGKNVRVSNSFAVPFEEDDKDPSVWFLDHNYVESMNDMFKKVNAREKLIGWYHSGPKLRASDLDINELFKRYTPNPLLVIVDVQPKETGVPTDAYFAVDEIKDD 155          
BLAST of DY260562 vs. ExPASy Swiss-Prot
Match: PSD7_DROME (26S proteasome non-ATPase regulatory subunit 7 OS=Drosophila melanogaster GN=Mov34 PE=1 SV=6)

HSP 1 Score: 182.956 bits (463), Expect = 3.261e-45
Identity = 87/149 (58.39%), Postives = 116/149 (77.85%), Query Frame = 3
Query:   60 PISSRPIEKVLVHPLVLLSIVHNYHRVPQ-DTRKRVVGVLLGS-SFKGTVDVSHSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKEN 500
            P     + KV+VHPLVLLS+V +++R+ +   +KRVVGVLLG    KG +DVS+S+AVPF+EDDKD  +WFLDH+Y E+MY MFK++NA+E VVGWY TGPKL +ND+ I++L   Y PN VLVIID +PK+LG+PT+AY  VEEV ++
Sbjct:    2 PSQEVSVNKVIVHPLVLLSVVDHFNRMGKIGNQKRVVGVLLGCWRSKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNARERVVGWYHTGPKLHQNDIAINELVRRYCPNSVLVIIDAKPKDLGLPTEAYISVEEVHDD 150          
BLAST of DY260562 vs. ExPASy Swiss-Prot
Match: RPN8_SCHPO (26S proteasome regulatory subunit rpn8 OS=Schizosaccharomyces pombe GN=rpn8 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.239e-44
Identity = 79/140 (56.43%), Postives = 114/140 (81.43%), Query Frame = 3
Query:   81 EKVLVHPLVLLSIVHNYHRVPQDTRKRVVGVLLGSSFKGTVDVSHSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKEN 500
            ++V+VHPLVLLS V +Y+R  + T++RVVG+LLG +    V+V++SYA+PFEED+K+  +WFLDHN+ ESM  MFK+INA E +VGWY TGP+LR +DL+I+ L   Y+PNPVLVIIDV+PK +G+PT AY+ ++E++++
Sbjct:   15 QQVIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASVWFLDHNFMESMNEMFKKINANEKLVGWYHTGPQLRPSDLEINNLLKKYIPNPVLVIIDVKPKSVGLPTNAYFAIDEIEDD 154          
BLAST of DY260562 vs. ExPASy Swiss-Prot
Match: RPN8_CANGA (26S proteasome regulatory subunit RPN8 OS=Candida glabrata GN=RPN8 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 4.269e-37
Identity = 73/141 (51.77%), Postives = 105/141 (74.47%), Query Frame = 3
Query:   81 EKVLVHPLVLLSIVHNYHRVPQDTRKRVVGVLLGSSFKGTVDVSHSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVP-NPVLVIIDVQPKELGIPTKAYYDVEEVKEN 500
            + V + PLVLLS++ +Y R      KR VGV+LG S   T+ V++S+A+PFEED+K+  +WFLDHNY ESM  M K+INAKE ++GWY +GPKLR +DL I++LF  Y   NP+L+I+DV+ +++G+PT AY  VE+VK++
Sbjct:    6 DNVTIAPLVLLSVLDHYERTNTPEGKRCVGVILGDSQTNTIRVTNSFALPFEEDEKNSDVWFLDHNYIESMNEMCKKINAKEKLIGWYHSGPKLRASDLKINELFKKYTQGNPLLLIVDVKQQDVGLPTDAYMAVEQVKDD 146          
BLAST of DY260562 vs. ExPASy Swiss-Prot
Match: RPN8_YEAST (26S proteasome regulatory subunit RPN8 OS=Saccharomyces cerevisiae GN=RPN8 PE=1 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 9.510e-37
Identity = 72/141 (51.06%), Postives = 104/141 (73.76%), Query Frame = 3
Query:   81 EKVLVHPLVLLSIVHNYHRVPQDTRKRVVGVLLGSSFKGTVDVSHSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVP-NPVLVIIDVQPKELGIPTKAYYDVEEVKEN 500
            EKV + PLVLLS + +Y R      KR VGV+LG +   T+ V++S+A+PFEED+K+  +WFLDHNY E+M  M K+INAKE ++GWY +GPKLR +DL I++LF  Y   NP+L+I+DV+ + +G+PT AY  +E+VK++
Sbjct:    6 EKVTIAPLVLLSALDHYERTQTKENKRCVGVILGDANSSTIRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEMCKKINAKEKLIGWYHSGPKLRASDLKINELFKKYTQNNPLLLIVDVKQQGVGLPTDAYVAIEQVKDD 146          
The following BLAST results are available for this feature:
BLAST of DY260562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
PSD7_ARATH4.519e-7183.87Probable 26S proteasome non-ATPase regulatory subu... [more]
PSD7_DICDI3.977e-5166.4226S proteasome non-ATPase regulatory subunit 7 OS=... [more]
PSD7_MOUSE2.258e-4660.5626S proteasome non-ATPase regulatory subunit 7 OS=... [more]
PSD7_HUMAN2.258e-4660.5626S proteasome non-ATPase regulatory subunit 7 OS=... [more]
PSD7_BOVIN2.258e-4660.5626S proteasome non-ATPase regulatory subunit 7 OS=... [more]
RPN8_NEUCR3.261e-4561.4326S proteasome regulatory subunit rpn-8 OS=Neurosp... [more]
PSD7_DROME3.261e-4558.3926S proteasome non-ATPase regulatory subunit 7 OS=... [more]
RPN8_SCHPO1.239e-4456.4326S proteasome regulatory subunit rpn8 OS=Schizosa... [more]
RPN8_CANGA4.269e-3751.7726S proteasome regulatory subunit RPN8 OS=Candida ... [more]
RPN8_YEAST9.510e-3751.0626S proteasome regulatory subunit RPN8 OS=Saccharo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YO13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260562 ID=DY260562; Name=DY260562; organism=Citrus clementina; type=EST; length=1234bp
GAGAGCCAAAGTCCCTACCAACACCGAGAGATTCCAATATGGACGTGATA
AAGACCCCGCCAATTTCCTCGAGACCCATAGAGAAGGTCCTAGTTCACCC
GCTCGTCCTACTAAGCATCGTCCACAATTACCACCGCGTCCCCCAGGACA
CGCGCAAGCGCGTCGTCGGCGTCCTCCTCGGTAGCTCCTTCAAAGGCACC
GTCGATGTCTCCCACAGCTACGCAGTGCCTTTTGAGGAAGATGACAAAGA
CCCAGGAATATGGTTTCTCGACCACAACTACCATGAATCAATGTATTCAA
TGTTCAAAAGAATCAATGCCAAGGAGCATGTCGTAGGTTGGTACAGTACA
GGACCCAAGCTACGAGAGAATGATCTTGACATTCACCAATTATTTCACAA
CTATGTCCCAAATCCTGTATTGGTCATTATTGATGTCCAACCAAAGGAGC
TTGGAATACCCACCAAGGCTTACTATGATGTTGAGGAGGTTAAAGAGAAT
GCCACCCCGAAAAAGCCAAAGGTCCTTGTACCCGTGCCCCTCCGAACTCG
CCCGCTCCTGAAGTCCAAACAACCCGGAGTGGAGCCCTTGGCCTAGGGAC
GCCACAGACCCCCCCCTCCAGCACCCTTGGCATTGACGGTCCATCACATC
CTTGTCCCTCTTGACCTAATCTATCTTTCACCTCGGCCCGCTGCCTTCCC
ACGTCGCGTTGCGGCCCCCCCCCTCCCTTCCCCTCCCTCTCCCTCCCCCG
CGACCGCCCCCGCCTCCCCCCCAACTCGCCGGCCAACACACCGTTCATCG
CATCCCTCCGCCCCAAGGCCACTCCCCCAACTCCCCCCCCCCTCACCCAC
CCACGACCTCCCTCCTCCCCCCCCCCCTCGCCCCGCCCTCCGCAGCCCCG
CACCCCCAGCACCACCAATCCCACTTACTCGCCCAACCCGACTTTCACCC
TCCCCACCCCACGCCGCTACTCACCACTGACACTGACCACACGCCTCGTG
TTCCTCCACCTTAACCTCCTTTCTGTCTACTGTCCCGCCCGCCCCCCTGC
CCGTCTGCTCCCATCCACCTACTGCCGCACCCCCGGCCACCCCTGTCTTC
CGCTCCCCCTCCCTGGCACGTCCTCCGTTCCACTCCCCTCTCTCTCATCC
ATACACCCCCCCCACCCCCCCTGACCTCCTACCTCACTCCCTCGTGCCTC
TCCTCCTCTTACTGCCCTTACTTCTTGCCCCTCC
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