DY260567

Overview
NameDY260567
Unique NameDY260567
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1159
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1590 contig Ccv1_Contig1590:1..1159. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260567 vs. ExPASy Swiss-Prot
Match: BH113_ARATH (Transcription factor bHLH113 OS=Arabidopsis thaliana GN=BHLH113 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 6.477e-16
Identity = 57/122 (46.72%), Postives = 71/122 (58.20%), Query Frame = 3
Query:  444 DQGSLPTLTSKRHKADLSIS-AKERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIKFLHEQVKVLSAPIPPKPAHHLRG--------RKLKPYTLKNPGLCPPPHFPVTAGIARNNGS 782
            DQ   P    KR++   S+  AK RKE+LGERI ALQQLVSPYGKTD ASVL EAM YIKFL +Q++VL +P      H L G          +K   L++ GLC  P    T  +  +NG+
Sbjct:  132 DQNRKPGKKGKRNQEKSSVGIAKVRKERLGERIAALQQLVSPYGKTDAASVLHEAMGYIKFLQDQIQVLCSPYLIN--HSLDGGVVTGDVMAAMKAKDLRSRGLCLVP-VSSTVHVENSNGA 250          
BLAST of DY260567 vs. ExPASy Swiss-Prot
Match: BH114_ARATH (Transcription factor bHLH114 OS=Arabidopsis thaliana GN=BHLH114 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 3.554e-14
Identity = 42/52 (80.77%), Postives = 45/52 (86.54%), Query Frame = 3
Query:  501 SAKERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIKFLHEQVKVLSAP 656
            S K RKEKLG+RI ALQQLVSP+GKTDTASVL EA+EYIKFL EQV VLS P
Sbjct:  171 SFKVRKEKLGDRITALQQLVSPFGKTDTASVLNEAVEYIKFLQEQVTVLSNP 222          
BLAST of DY260567 vs. ExPASy Swiss-Prot
Match: BH123_ARATH (Transcription factor bHLH123 OS=Arabidopsis thaliana GN=BHLH123 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.642e-14
Identity = 52/108 (48.15%), Postives = 65/108 (60.19%), Query Frame = 3
Query:  471 SKRHKADLSIS--AKERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIKFLHEQVKVLSAPIPPKPA--------HHLRGRKLKPYTLKNPGLCPPP---HFPVT 755
            +KR K++ +    A +RKEK+G+RI ALQQLVSP+GKTD ASVL EA+EYIKFLH+QV  LS P     A        H       +   L++ GLC  P    FPVT
Sbjct:  330 AKRAKSEAASPSPAFKRKEKMGDRIAALQQLVSPFGKTDAASVLSEAIEYIKFLHQQVSALSNPYMKSGASLQHQQSDHSTELEVSEEPDLRSRGLCLVPVSSTFPVT 437          
BLAST of DY260567 vs. ExPASy Swiss-Prot
Match: BH112_ARATH (Transcription factor bHLH112 OS=Arabidopsis thaliana GN=BHLH112 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.009e-13
Identity = 46/95 (48.42%), Postives = 61/95 (64.21%), Query Frame = 3
Query:  507 KERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIKFLHEQVKVLSAPIPPKPAHHLRGRKL----------KPYTLKNPGLCPPP---HFPV 752
            K RKE L ++I +LQQLVSP+GKTDTASVL EA+EYIKFLH+QV VLS P   + A + + +++          + + L+  GLC  P    FPV
Sbjct:  280 KVRKENLRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFLHDQVTVLSTPYMKQGASNQQQQQISGKSKSQDENENHELRGHGLCLVPISSTFPV 374          
BLAST of DY260567 vs. ExPASy Swiss-Prot
Match: BH110_ARATH (Transcription factor bHLH110 OS=Arabidopsis thaliana GN=BHLH110 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 8.754e-13
Identity = 37/50 (74.00%), Postives = 42/50 (84.00%), Query Frame = 3
Query:  507 KERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIKFLHEQVKVLSAP 656
            K RKEKLG+RI ALQQLVSP+GKTDTASVL EA+ YIKFL  Q++ LS P
Sbjct:  332 KVRKEKLGDRIAALQQLVSPFGKTDTASVLMEAIGYIKFLQSQIETLSVP 381          
BLAST of DY260567 vs. ExPASy Swiss-Prot
Match: BH103_ARATH (Transcription factor bHLH103 OS=Arabidopsis thaliana GN=BHLH103 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.344e-12
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 3
Query:  501 SAKERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIKFLHEQV--KVLSAP 656
            S K RKEKLG+RI ALQQLVSP+GKTDTASVL +A++YIKFL EQ+  KV ++P
Sbjct:  188 SFKVRKEKLGDRITALQQLVSPFGKTDTASVLHDAIDYIKFLQEQITEKVSTSP 241          
BLAST of DY260567 vs. ExPASy Swiss-Prot
Match: BH133_ARATH (Transcription factor bHLH133 OS=Arabidopsis thaliana GN=BHLH133 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 9.678e-12
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 3
Query:  507 KERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIKFLHEQVKVLSAPIPPKPAHH 680
            K RKEKLG RI +L QLVSP+GKTDTASVL EA+ YI+FLH Q++ LS P    P+ +
Sbjct:  219 KVRKEKLGGRIASLHQLVSPFGKTDTASVLSEAIGYIRFLHSQIEALSLPYFGTPSRN 276          
BLAST of DY260567 vs. ExPASy Swiss-Prot
Match: BH068_ARATH (Transcription factor bHLH68 OS=Arabidopsis thaliana GN=BHLH68 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 6.273e-11
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = 3
Query:  507 KERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIKFLHEQVKVLSAP 656
            K RKEKLG RI AL QLVSP+GKTDTASVL EA+ YI+FL  Q++ LS P
Sbjct:  263 KVRKEKLGGRIAALHQLVSPFGKTDTASVLSEAIGYIRFLQSQIEALSHP 312          
The following BLAST results are available for this feature:
BLAST of DY260567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
BH113_ARATH6.477e-1646.72Transcription factor bHLH113 OS=Arabidopsis thalia... [more]
BH114_ARATH3.554e-1480.77Transcription factor bHLH114 OS=Arabidopsis thalia... [more]
BH123_ARATH4.642e-1448.15Transcription factor bHLH123 OS=Arabidopsis thalia... [more]
BH112_ARATH3.009e-1348.42Transcription factor bHLH112 OS=Arabidopsis thalia... [more]
BH110_ARATH8.754e-1374.00Transcription factor bHLH110 OS=Arabidopsis thalia... [more]
BH103_ARATH4.344e-1270.37Transcription factor bHLH103 OS=Arabidopsis thalia... [more]
BH133_ARATH9.678e-1262.07Transcription factor bHLH133 OS=Arabidopsis thalia... [more]
BH068_ARATH6.273e-1170.00Transcription factor bHLH68 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP12YO20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260567 ID=DY260567; Name=DY260567; organism=Citrus clementina; type=EST; length=1159bp
CATTTATGGCTTCTTTTTTTTAACCCTTTTGATGCTCAAATTTCAACTGG
GTTTCGGTGATTTTAGTGAACTCTTTTGAAGTTTTGATTAAAGGGTTTAA
TTTTGTCGTAAAGTTTTCAACTTTTTGAGACGCAAAAACTGACAAATTTA
AGCAGAAAGTTCCATTTTCTTGAAAGGGAAACCGTTTTTTTGTTTCCGAA
GACGGACTTTTGGGTTCGTTGTTTTTTTAAAAAAAACTTGGAACAAAGCC
ATTTATTTTGGCTTTCACTAAACACTTCGGTGGAAATTTGAGTGATACTT
GAACTGGGCTGTGATTGTTTTTAGCGTATAAAGCTCAGATTTTTATTGTG
AGCTCTCTTGGCAATGCTGACTCTATACTCTTGGGAGTATAAGGTATAAA
GGTGTCGAAGATGATGGAAAATAAAAGAAGTCCTTGTGCTGTTGACCAAG
GCAGTCTCCCTACTCTTACATCCAAGCGACACAAAGCTGATCTGTCCATC
TCCGCCAAGGAGAGGAAAGAGAAGCTTGGTGAACGAATCATTGCTCTGCA
ACAGCTTGTTTCCCCATATGGAAAGACGGATACTGCATCTGTCCTTTGGG
AGGCGATGGAGTACATAAAATTTCTACATGAACAAGTGAAGGTGTTGAGT
GCCCCCATACCTCCAAAGCCTGCCCACCACCTAAGGGGCAGGAAATTAAA
GCCCTATACCCTGAAAAACCCAGGGTTATGTCCCCCTCCCCATTTTCCTG
TAACGGCTGGAATTGCCCGAAACAATGGTAGCTGAACAATTGGGTCCCCC
CCACCAAGACCCTTTTTCCCCAAATTTTGAACAACCCCCTCACACACTCT
CCCTCAAACATCAACCCCTACACTCACCAGCCCCAACAGCCTTCCAAAGG
GGTCTGCCTATGGCGAACAACCAACTCTTTTCCCCCCCCACTGCAACAAA
ACAATCCTACTACAGCCACATTGACACGCGTCCTCCGCCTAACTATAAAC
ATATCCCGCCCATTCCGGATGAACCCCCATATACACCTCGCCACCCCCCC
CCACCCCCTCATGCGTACATCCCCTCACCCCGCTGCACCCATTCTCACCC
TCACTCCCTCCTCTTTCCCCGTCCCACCCAAACACATAGCTATCGCCAAT
CCATCTCAA
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