DY260568

Overview
NameDY260568
Unique NameDY260568
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1163
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY260568 vs. ExPASy Swiss-Prot
Match: RHA2B_ARATH (RING-H2 zinc finger protein RHA2b OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 2.566e-12
Identity = 32/76 (42.11%), Postives = 46/76 (60.53%), Query Frame = 3 
Query:  393 LSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 620
            LS + +  N N    Y    + ++A  DC VCL++ +   ++  L C H+FHK CLE WL +LN  CPLCR+PL+P
Sbjct:   49 LSVLADQLNLNRLFSYR---YSDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLLP 121
The following BLAST results are available for this feature:
BLAST of DY260568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RHA2B_ARATH2.566e-1242.11RING-H2 zinc finger protein RHA2b OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP12YO21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260568 ID=DY260568; Name=DY260568; organism=Citrus clementina; type=EST; length=1163bp
GCTATCTTCTTTTGTCTCTTTTTCAGGATTCTGCAGTCATCATTTTTCCT
TTTTAAAAATTTTCGCTTCTCAGATATCAAGGAAGCAGTCACAAGATTTT
GCTTGATTTCTGATTCAGTATCTCAAATTTAGTACAAAATTGGGTATCTG
TAAATTTAAAATTTTAATTCGAAAACATGGGCCTCGCTAGTATGCCGTCC
GCATCAGAAGGAATGCTATGCTTGATTCTAATGAACACTGCTATGTCAAT
CTCAATCGTCAAAGGCATATTCAGATCAATACTCAAGGTTGTCGGTTTCC
AGCTTGCAGACTCATCATCGCCACCGTATTCATATTTCGCATCACCTCAA
GTTGTCTCCGCAGAGCCATATGATGTAAATTTAAGTCCTCCCCTTAGCTA
TGTTGAGGAGTTCCGAAACCAGAACCCTGCAATCAAGTATGAAACATTGC
TCCATTGTGAAGATGCAGAGCATGACTGTTCTGTGTGTTTGACCGAGTTT
GAGCCTCAATCTGATATCAATAACTTGTCTTGTGGACATTTGTTTCATAA
AGTGTGCTTGGAGAAGTGGCTGGACTATTTGAATGTTACGTGCCCGCTTT
GCAGGACACCTCTAATTCCTGAGTTTGAAGACCATCCCTCTTGCTTCTGG
TGAGAGTGTTTTATGAGCTTGTCTAGTTGAGGAGACTTTCATGAACCGCA
TGTAGTGTACCGGTAATTTCCAATGCCCCCGCCCGGAGGTAGGGTCGGTT
ACACGCCTTTCAAAGTGGAAATTTAAATCCCAAGTCCCCTTTGAAAGCTT
TGGTGACAAAACCCAAACTTCCCTTGCCTAATCTTTGGAGGGTTTCCGGG
TCCCTCTTAAGACAAACCACCCCATCTCTCTGCACCCGGTTTCTCCTTAT
TAGGCTCGAACAAACAACAAACAAAAACACGACCTCTCTTCCCTTTTCAC
GCTTGGGGCATCTCGACCAACGGCGTTGCCGTACCGTTTCGGTCCTACCC
AAATCCAGAAGCTTCACGTCAATACAGACTAACCGACAACACACAGCGCA
GAAATACTACAAAGACGTCCCCCCAACAGACACTCACACTCGACCCGCCC
CATGGCCTCGTCTCCGGGACCGTCGCTCCACACTGGCCCCCCCCCCCTCC
CACCGCTCACGGC
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