DY260576

Overview
NameDY260576
Unique NameDY260576
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1241
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260576_ssr13 microsatellite DY260576_ssr13:13..30. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y3800_AZOSE (UPF0061 protein AZOSEA38000 OS=Azoarcus sp. (strain EbN1) GN=AZOSEA38000 PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 6.557e-62
Identity = 122/204 (59.80%), Postives = 142/204 (69.61%), Query Frame = 1
Query:  262 LEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSE----RWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPSF 861
            +++L  D+ FV ELPGDP      R+V  ACY++V P+  V  P L+AWS  VA  L  D  +   P+F   F+G   + G  PYA CYGGHQFG WAGQLGDGRAITLGE +  + +    RWELQLKGAG TPYSR ADG AVLRSSIREFLCSEAMH LG+PTTRALCL  TG+    DMFY+G PK EPGA V R+APSF
Sbjct:    1 MKNLVLDNRFVHELPGDPNPSPDVRQVHGACYSRVMPTP-VSAPHLIAWSPEVAALLGFDESDVRSPEFAAVFAGNALMPGMEPYAACYGGHQFGNWAGQLGDGRAITLGEAVTTRGDGHTGRWELQLKGAGPTPYSRHADGRAVLRSSIREFLCSEAMHHLGVPTTRALCLVGTGEKVVRDMFYDGRPKAEPGAVVCRVAPSF 203          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y1574_AZOSB (UPF0061 protein azo1574 OS=Azoarcus sp. (strain BH72) GN=azo1574 PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 5.551e-61
Identity = 124/200 (62.00%), Postives = 141/200 (70.50%), Query Frame = 1
Query:  262 LEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPSF 861
            +  L +D+ FVRELP DP T    R+V  A Y++V+P+  V  P LVA S  VA  L  D  +   P+F   F G   L G  PYA CYGGHQFG WAGQLGDGRAITLGE+LN +  RWELQLKGAG TPYSR ADG AVLRSSIREFLCSEAMH LG+PTTRAL L  TG+    DMFY+GNP+ EPGA V R+APSF
Sbjct:    1 MRPLVFDNRFVRELPADPETGPHTRQVAGASYSRVNPTP-VAAPHLVAHSAEVAALLGWDESDIASPEFAEVFGGNRLLDGMEPYAACYGGHQFGNWAGQLGDGRAITLGEVLNGQGGRWELQLKGAGPTPYSRRADGRAVLRSSIREFLCSEAMHHLGVPTTRALSLVGTGEKVVRDMFYDGNPQAEPGAIVCRVAPSF 199          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y1788_METFK (UPF0061 protein Mfla_1788 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=Mfla_1788 PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 2.109e-60
Identity = 115/197 (58.38%), Postives = 147/197 (74.62%), Query Frame = 1
Query:  271 LNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPSF 861
            L +D+ F+RELPGDP T +  R+V  AC+++V P++ V +P+L+A+S  + ++LEL  +E   P +    +G   + G  PYA CYGGHQFG WAGQLGDGRAI+LGE++N + +RWELQLKGAG TPYSR ADG AVLRSS+REFLCSEAMH LGIPTTRAL L  TG     DMFY+G+P+ E GA V R++PSF
Sbjct:    2 LTFDNRFLRELPGDPETSNQLRQVYGACWSRVMPTS-VSSPKLLAYSHEMLEALELSEEEIRSPAWVDALAGNGLMPGMEPYAACYGGHQFGHWAGQLGDGRAISLGEVVNRQGQRWELQLKGAGVTPYSRMADGRAVLRSSVREFLCSEAMHHLGIPTTRALSLVQTGDVVIRDMFYDGHPQAEKGAIVCRVSPSF 197          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y3822_GEMAT (UPF0061 protein GAU_3822 OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=GAU_3822 PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 5.195e-59
Identity = 118/200 (59.00%), Postives = 140/200 (70.00%), Query Frame = 1
Query:  262 LEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPSF 861
            ++ L +D+ FV ELPGDP   +  R+VL A ++ V P+  V  PQL+A +  VA  L   P++   P+F   F G   L G  P+A CYGGHQFG WAGQLGDGRAI+LGE++    +RWELQLKGAG TPYSR ADG AVLRSSIREFLCSEAMH LG+PTTRAL L TTG     D+ YNGNP  EPGA V R+APSF
Sbjct:    1 MQTLRFDNRFVDELPGDPDPRNQRRQVLGAAWSAVQPTP-VTAPQLLAVAPDVAAMLGFSPEQTASPEFAAVFGGNALLEGMRPWAACYGGHQFGQWAGQLGDGRAISLGELVTTAGDRWELQLKGAGPTPYSRTADGRAVLRSSIREFLCSEAMHHLGVPTTRALSLVTTGDPVVRDVLYNGNPAPEPGAVVCRVAPSF 199          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y1510_NITMU (UPF0061 protein Nmul_A1510 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=Nmul_A1510 PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 3.368e-58
Identity = 119/208 (57.21%), Postives = 149/208 (71.63%), Query Frame = 1
Query:  253 LKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPL-----FFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPSF 861
            L  L D  +D+ FVR+LPGDP T ++PR+V +A YT+VSP+  V +P+L+AW++ V + L +      RP  P+       +G   L    PYA  YGGHQFG WAGQLGDGRAITLGE+++   +R+ELQLKGAGKTPYSR ADG AVLRSS+REFLCSEAMH LG+PTTRAL L  TG+    DMFY+G+P  EPGA V R++PSF
Sbjct:   15 LPDLFDARFDNRFVRQLPGDPETRNVPRQVRNAGYTQVSPTP-VRSPRLLAWADEVGEMLGI-----ARPASPVSPAVEVLAGNRILPSMQPYAARYGGHQFGHWAGQLGDGRAITLGELISPNDKRYELQLKGAGKTPYSRTADGRAVLRSSVREFLCSEAMHSLGVPTTRALSLVATGEAVIRDMFYDGHPGAEPGAIVCRVSPSF 216          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y683_TOLAT (UPF0061 protein Tola_0683 OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=Tola_0683 PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 1.415e-56
Identity = 118/197 (59.90%), Postives = 143/197 (72.59%), Query Frame = 1
Query:  271 LNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPSF 861
            L++D+ F+RELPGDP T + PR+V  A ++ V+P A V  PQL+A S  VA  L +   E ++P +    SG   L G  P+A CYGGHQFG WAGQLGDGRAI+LGE+++    RWELQLKGAG TPYSR  DG AVLRSSIREFLCSEAM  LG+PTTRAL L  TG+    DMFY+GNP++EPGA V R+APSF
Sbjct:    4 LHFDNRFIRELPGDPLTLNQPRQVHAAFWSAVTP-APVPQPQLIASSAEVAALLGISLAELQQPAWVAALSGNGLLDGMSPFATCYGGHQFGNWAGQLGDGRAISLGELIH-NDLRWELQLKGAGVTPYSRRGDGKAVLRSSIREFLCSEAMFHLGVPTTRALSLVLTGEQIWRDMFYDGNPQQEPGAIVCRVAPSF 198          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y9953_RHOBA (UPF0061 protein RB9953 OS=Rhodopirellula baltica GN=RB9953 PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 5.032e-54
Identity = 109/198 (55.05%), Postives = 135/198 (68.18%), Query Frame = 1
Query:  268 DLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPSF 861
            DL +D+ F R+LP D    +  R+V  A +++V P+  V  P+ VA S+ VA+ + LDPK     +     +G     G  P+A CYGGHQFG WAGQLGDGRAI LGE++    + W LQLKGAG TPYSR ADGLAVLRSS+REFLCSEAMH LG+PTTRAL L  TG+    DMFY+G+P+ E GA V R+APSF
Sbjct:    4 DLTFDNRFTRDLPADTEPRNFTRQVHQAGFSRVKPTP-VSAPKWVAGSKEVAELIGLDPKWLGSAELTEVLAGNALADGMDPFAMCYGGHQFGNWAGQLGDGRAINLGEVVTADEKHWTLQLKGAGLTPYSRTADGLAVLRSSVREFLCSEAMHHLGVPTTRALSLVLTGEKVLRDMFYDGHPEHELGAIVCRVAPSF 200          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y2284_XANCP (UPF0061 protein XCC2284 OS=Xanthomonas campestris pv. campestris GN=XCC2284 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.619e-52
Identity = 113/197 (57.36%), Postives = 133/197 (67.51%), Query Frame = 1
Query:  271 LNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPSF 861
            L +D+    ELPGDP      REVL A ++ V P+  V  P L+A+S  VA  L L  ++   P F   F G     G  P+A  YGGHQFG WAGQLGDGRAI+LGE + +   R+ELQLKGAG TPYSR ADG AVLRSSIREFLCSEAMH+LG+PTTRAL L  TG     DMFY+G+P+ EPGA V R+APSF
Sbjct:    4 LQFDNRLRAELPGDPEEGPRRREVL-AAWSAVQPTP-VAAPTLLAYSADVAQRLGLRAEDLASPRFAEVFGGNALYPGMQPWAVNYGGHQFGHWAGQLGDGRAISLGEAIGVDGGRYELQLKGAGPTPYSRGADGRAVLRSSIREFLCSEAMHYLGVPTTRALSLVGTGDAVVRDMFYDGHPRREPGAIVCRVAPSF 198          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y1831_XANC8 (UPF0061 protein XC_1831 OS=Xanthomonas campestris pv. campestris (strain 8004) GN=XC_1831 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.619e-52
Identity = 113/197 (57.36%), Postives = 133/197 (67.51%), Query Frame = 1
Query:  271 LNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPSF 861
            L +D+    ELPGDP      REVL A ++ V P+  V  P L+A+S  VA  L L  ++   P F   F G     G  P+A  YGGHQFG WAGQLGDGRAI+LGE + +   R+ELQLKGAG TPYSR ADG AVLRSSIREFLCSEAMH+LG+PTTRAL L  TG     DMFY+G+P+ EPGA V R+APSF
Sbjct:    4 LQFDNRLRAELPGDPEEGPRRREVL-AAWSAVQPTP-VAAPTLLAYSADVAQRLGLRAEDLASPRFAEVFGGNALYPGMQPWAVNYGGHQFGHWAGQLGDGRAISLGEAIGVDGGRYELQLKGAGPTPYSRGADGRAVLRSSIREFLCSEAMHYLGVPTTRALSLVGTGDAVVRDMFYDGHPRREPGAIVCRVAPSF 198          
BLAST of DY260576 vs. ExPASy Swiss-Prot
Match: Y1894_XANCB (UPF0061 protein xcc-b100_1894 OS=Xanthomonas campestris pv. campestris (strain B100) GN=xcc-b100_1894 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 2.761e-52
Identity = 112/197 (56.85%), Postives = 133/197 (67.51%), Query Frame = 1
Query:  271 LNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLGTTGKFGTPDMFYNGNPKEEPGAFVWRIAPSF 861
            L +D+    +LPGDP      REVL A ++ V P+  V  P L+A+S  VA  L L  ++   P F   F G     G  P+A  YGGHQFG WAGQLGDGRAI+LGE + +   R+ELQLKGAG TPYSR ADG AVLRSSIREFLCSEAMH+LG+PTTRAL L  TG     DMFY+G+P+ EPGA V R+APSF
Sbjct:    4 LQFDNRLRAQLPGDPEQGPRRREVL-AAWSAVRPTP-VAAPTLLAYSADVAQRLGLRAEDLASPQFAEVFGGNALYPGMQPWAVNYGGHQFGHWAGQLGDGRAISLGEAIGVDGGRYELQLKGAGPTPYSRGADGRAVLRSSIREFLCSEAMHYLGVPTTRALSLVGTGDAVVRDMFYDGHPRREPGAIVCRVAPSF 198          
The following BLAST results are available for this feature:
BLAST of DY260576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 259
Match NameE-valueIdentityDescription
Y3800_AZOSE6.557e-6259.80UPF0061 protein AZOSEA38000 OS=Azoarcus sp. (strai... [more]
Y1574_AZOSB5.551e-6162.00UPF0061 protein azo1574 OS=Azoarcus sp. (strain BH... [more]
Y1788_METFK2.109e-6058.38UPF0061 protein Mfla_1788 OS=Methylobacillus flage... [more]
Y3822_GEMAT5.195e-5959.00UPF0061 protein GAU_3822 OS=Gemmatimonas aurantiac... [more]
Y1510_NITMU3.368e-5857.21UPF0061 protein Nmul_A1510 OS=Nitrosospira multifo... [more]
Y683_TOLAT1.415e-5659.90UPF0061 protein Tola_0683 OS=Tolumonas auensis (st... [more]
Y9953_RHOBA5.032e-5455.05UPF0061 protein RB9953 OS=Rhodopirellula baltica G... [more]
Y2284_XANCP1.619e-5257.36UPF0061 protein XCC2284 OS=Xanthomonas campestris ... [more]
Y1831_XANC81.619e-5257.36UPF0061 protein XC_1831 OS=Xanthomonas campestris ... [more]
Y1894_XANCB2.761e-5256.85UPF0061 protein xcc-b100_1894 OS=Xanthomonas campe... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YP07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260576 ID=DY260576; Name=DY260576; organism=Citrus clementina; type=EST; length=1241bp
TTCTCTTCACTCTCTTCTTCTTCTTCTTCTCTCCGCCCTCGCCTCCCCAA
ATTCCCGTTCTACCCCGCCTACTTTACAAAGTCTCCATCCTGTCCTTCCA
TCGCATGCCACGTCAGCACGACAGGCGGCGGCGGTGCTGCGCAGATGGAG
TCGAGTGCGTCTGTCGATTCGGTGACGCATGATTTGAAGAATCAGAGATT
GGATACGGAAACGGAAACGGACGGCGGAGATGAGAGCAAGATGACGAAGA
ACCTGAAAGCTCTTGAGGATCTGAATTGGGACCACTCGTTTGTTCGAGAG
TTGCCTGGTGATCCCAGGACTGATTCTATCCCTCGTGAGGTATTGCATGC
CTGTTATACTAAAGTTTCTCCGTCAGCTGAAGTAGAAAATCCTCAGCTTG
TTGCGTGGTCAGAATCAGTGGCCGATTCTCTTGAGTTGGATCCTAAAGAA
TTTGAAAGACCAGATTTTCCCCTCTTTTTTTCTGGGGCTACTCCTTTGGC
GGGAGCGGTGCCATATGCTCAATGCTACGGTGGACATCAATTTGGCATGT
GGGCTGGTCAGCTGGGTGATGGTCGGGCAATAACTCTTGGCGAGATCCTG
AATTTGAAGTCGGAAAGGTGGGAATTGCAGCTTAAAGGAGCTGGGAAGAC
TCCATATAGCCGCTTTGCTGATGGCCTTGCAGTACTGCGTAGTAGCATCA
GGGAGTTCCTTTGCAGTGAAGCCATGCACTTTTTAGGAATCCCAACAACT
CGTGCACTTTGTCTTGGGACAACAGGAAAATTTGGTACTCCAGACATGTT
TTACAATGGCAATCCAAAGGAAGAACCGGGGGCATTTGTTTGGCGAATTG
CCCCATCTTTTTTTGCCCTTTGGTTCAAAAAAAAAACTGGCCTCAAAAAG
AAAAAAAAGGAACCCTTGGAAAAAGTCCGGAATTTAAACTGAAATAGCCA
ATTAAAAAATCTTTTTTCCCCAAAATTTGAAAAAAAAAAAAAAAAACCAA
AAACCTTTCCTTTTTACCCAGGGGGAAAAAAGGAAAACTTTCCGCTGTTT
GGAACCCCAAACTTTTAAAAAAAAAAAAACCACCCCAGGGGGGGGGGGGG
GGAGGTTTGGCGAAAAGCCCCAACGCGCCCTTTCTTTTGTGGGTGTCCCC
CCCAGGGGGCAAAGAGGGGGGGTTGTGGTTTTTTTTCCTCCCCCCCCCGG
GTGGGGGGGGGGGGGTGAACAAAACAAACACCAACCACAAA
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