DY260606

Overview
NameDY260606
Unique NameDY260606
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length953
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260606 vs. ExPASy Swiss-Prot
Match: XPO1_RAT (Exportin-1 OS=Rattus norvegicus GN=Xpo1 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.874e-29
Identity = 75/159 (47.17%), Postives = 100/159 (62.89%), Query Frame = 2
Query:    2 KFHILVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQ---LLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTE 469
            K H  +LE       AL+  L Y++ +S V+ETE+FK+CL+YWN    EL+      E+P  T+       PLL       G+Q   +  RRQLY   LSK+R+LM+ RMAKPEEVL+VE++ G +VRE MKD D +  YK MRETL+YL+HLD+ DTE
Sbjct:  331 KEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYR-----ESPFSTS-----ASPLLS------GSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTE 473          
BLAST of DY260606 vs. ExPASy Swiss-Prot
Match: XPO1_MOUSE (Exportin-1 OS=Mus musculus GN=Xpo1 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.874e-29
Identity = 75/159 (47.17%), Postives = 100/159 (62.89%), Query Frame = 2
Query:    2 KFHILVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQ---LLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTE 469
            K H  +LE       AL+  L Y++ +S V+ETE+FK+CL+YWN    EL+      E+P  T+       PLL       G+Q   +  RRQLY   LSK+R+LM+ RMAKPEEVL+VE++ G +VRE MKD D +  YK MRETL+YL+HLD+ DTE
Sbjct:  331 KEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYR-----ESPFSTS-----ASPLLS------GSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTE 473          
BLAST of DY260606 vs. ExPASy Swiss-Prot
Match: XPO1_HUMAN (Exportin-1 OS=Homo sapiens GN=XPO1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 9.541e-28
Identity = 72/160 (45.00%), Postives = 98/160 (61.25%), Query Frame = 2
Query:    2 KFHILVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQ---RRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEK 472
            K H  ++E        L+  L Y++ +S V+ETE+FK+CL+YWN    EL+      E+P  T+       PLL       G+Q      RRQLY   L K+R+LM+ RMAKPEEVL+VE++ G +VRE MKD D +  YK MRETL+YL+HLD+ DTE+
Sbjct:  331 KEHDQLIEKRLNLRETLMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYR-----ESPFSTS-----ASPLLS------GSQHFDVPPRRQLYLPMLFKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTER 474          
BLAST of DY260606 vs. ExPASy Swiss-Prot
Match: XPO1_DICDI (Exportin-1 OS=Dictyostelium discoideum GN=xpo1 PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.628e-27
Identity = 69/156 (44.23%), Postives = 95/156 (60.90%), Query Frame = 2
Query:    2 KFHILVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTE 469
            K H+ ++E++  NI  L +  E L+NIS +DE E+FK+CL+YWN     L+      +    T  ++  P                 R QLY   LSK+R+++I  MAKPEEV++VEDENGNIVRET KD D L  Y+ MRETLI+L+HLD E+T+
Sbjct:  331 KSHLKIMENSL-NIPYLTLAHEILVNISNIDELELFKICLEYWNFLSSNLYS-----DIATFTTTLLSTP----------------PRLQLYKSVLSKVRVVLIDHMAKPEEVIVVEDENGNIVRETTKDTDSLTLYESMRETLIFLTHLDSENTQ 464          
BLAST of DY260606 vs. ExPASy Swiss-Prot
Match: XPO1_DROME (Exportin-1 OS=Drosophila melanogaster GN=emb PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.350e-26
Identity = 66/147 (44.90%), Postives = 91/147 (61.90%), Query Frame = 2
Query:   41 ISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDA---HNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEK 472
            +  L   L YL+ IS V++ EVFK+CL+YWNS V +L+++   H  LE+                        Q+  RR+ YA  LSK+R +MI RMAKPEEVL+VE+ENG +VRE MKD + +  YK MRETL++L+HLD  DT++
Sbjct:  340 VDYLNQALMYLVMISEVEDVEVFKICLEYWNSLVEDLYNSEFFHPTLESTK--------------------RQQVYPRRRFYAPILSKVRFIMISRMAKPEEVLVVENENGEVVREFMKDTNSINLYKNMRETLVFLTHLDSVDTDR 466          
BLAST of DY260606 vs. ExPASy Swiss-Prot
Match: XPO1_SCHPO (Exportin-1 OS=Schizosaccharomyces pombe GN=xpo1 PE=1 SV=3)

HSP 1 Score: 117.087 bits (292), Expect = 1.523e-25
Identity = 68/158 (43.04%), Postives = 97/158 (61.39%), Query Frame = 2
Query:    8 HILVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLE----NPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTE 469
            H+  LE+  EN   LL    YL+NIS ++E E+FK+CL+YW+  V +L++    +     NP +    +  P  L+ S  + + A L  R+ +Y   LS LR++MI  M KPEEVLIVE++ G IVRE +K+ D +  YK MRE L+YL+HLD  DTE
Sbjct:  322 HLRPLENP-ENQEVLLNAHSYLLNISRINEREIFKICLEYWSKLVAQLYEEMQQIPMSEMNPLLN---LSSPTSLISSNPNML-ANLPLRKHIYKDILSTLRLVMIENMVKPEEVLIVENDEGEIVREFVKETDTITLYKSMREVLVYLTHLDVVDTE 474          
BLAST of DY260606 vs. ExPASy Swiss-Prot
Match: XPO1_YEAST (Exportin-1 OS=Saccharomyces cerevisiae GN=CRM1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.634e-19
Identity = 58/159 (36.48%), Postives = 92/159 (57.86%), Query Frame = 2
Query:   17 VLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGA-------QLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEK 472
            +LES +     LL   +YLI +S ++E E+FK  LDYW++ V +LF     L  PA   + +        ++  G GA       +   ++ +Y    S+LR+++I  M +PEEVL+VE++ G IVRE +K++D +  YK  RE L+YL+HL+  DTE+
Sbjct:  329 LLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEVQRL--PATEMSPLIQLSVGSQAISTGSGALNPEYMKRFPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEE 485          
The following BLAST results are available for this feature:
BLAST of DY260606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
XPO1_RAT3.874e-2947.17Exportin-1 OS=Rattus norvegicus GN=Xpo1 PE=2 SV=1[more]
XPO1_MOUSE3.874e-2947.17Exportin-1 OS=Mus musculus GN=Xpo1 PE=1 SV=1[more]
XPO1_HUMAN9.541e-2845.00Exportin-1 OS=Homo sapiens GN=XPO1 PE=1 SV=1[more]
XPO1_DICDI1.628e-2744.23Exportin-1 OS=Dictyostelium discoideum GN=xpo1 PE=... [more]
XPO1_DROME2.350e-2644.90Exportin-1 OS=Drosophila melanogaster GN=emb PE=1 ... [more]
XPO1_SCHPO1.523e-2543.04Exportin-1 OS=Schizosaccharomyces pombe GN=xpo1 PE... [more]
XPO1_YEAST3.634e-1936.48Exportin-1 OS=Saccharomyces cerevisiae GN=CRM1 PE=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP13YB04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260606 ID=DY260606; Name=DY260606; organism=Citrus clementina; type=EST; length=953bp
CAAGTTTCATATCTTAGTGCTCGAATCCACTCAAGAAAATATAAGTGCAT
TGCTGATGGGTCTTGAATATCTCATTAATATATCATATGTGGATGAAACA
GAGGTTTTTAAGGTTTGCTTGGATTATTGGAACTCTTTTGTTTTGGAGCT
TTTTGATGCGCACAATAATCTGGAAAATCCTGCTGTGACAGCAAACATGA
TGGGACTACCGATGCCTTTGCTTCCAAGTGTTGTCGATGGTATTGGGGCA
CAGCTTCTGCAACGGCGGCAGCTTTATGCTGTTCCATTGTCCAAGCTGAG
AATGCTAATGATCTGTCGTATGGCTAAGCCTGAAGAGGTCCTGATAGTTG
AAGATGAAAATGGGAATATTGTCCGCGAAACCATGAAGGACAACGATGTT
CTTGTTCAATATAAGATTATGAGGGAGACATTAATCTACTTGTCACACCT
TGACCATGAAGACACTGAAAAGCAGGGAAAAAAAATGTTTTTGAAATCAT
GCCCCTTTCTCCTTTATAGAATTACTAGCCCTAATCACAGACATGAATAA
AATGACTAGGAAGGAACAAAAACATGTTTTTGGCGGATGACAGTTAATGA
ATTAAAGACTCATTGTTTTGGATTGGCTTTTGTCCTTTTCATCTTCTGTC
GGAAAAGATGGAGTTTGGACAACTGACACACAAATGCTAAAAAAAGTTAA
GTAAACAATTGAGTGGTGAAGATTGGACGTGGAACACTTTAAACACCTTA
TGTTGGGCAATAAGATCCATATCCGGGTCAATGATGGAAAAAAAGAAAAA
ACAAAATTTCTGGTAACGGTTATCCCATGGCCTACCGGAAATCTAATGTA
AAAGACGAACAGACAAGTACACCCAAACCTTGTTCTTCCAACTACCATTA
TATATTTTTGTTGCACACAACTTACAAATCCAGAATAAGCTCTGATATAG
ATC
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