DY260645

Overview
NameDY260645
Unique NameDY260645
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length964
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1618 contig Ccv1_Contig1618:1..964. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.468e-23
Identity = 50/74 (67.57%), Postives = 54/74 (72.97%), Query Frame = 3
Query:   93 HANG--GGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDHKWC 308
            H NG  GGGW+NA ATFY              YGNLYSQGYGTNTAALSTALFNNGLSCG+C+EI+C ND KWC
Sbjct:   18 HVNGYAGGGWVNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIRCQNDGKWC 91          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.090e-22
Identity = 48/68 (70.59%), Postives = 51/68 (75.00%), Query Frame = 3
Query:  105 GGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDHKWC 308
            GGGWINA ATFY              YGNLYSQGYGT+TAALSTALFNNGLSCGSC+EI+C ND KWC
Sbjct:   23 GGGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNNGLSCGSCFEIRCENDGKWC 90          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.310e-21
Identity = 46/68 (67.65%), Postives = 49/68 (72.06%), Query Frame = 3
Query:  105 GGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDHKWC 308
            GG WINA ATFY              YGNLYSQGYG NTAALSTALFNNGLSCGSC+E+KC+ND  WC
Sbjct:   29 GGPWINAHATFYGEADASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGSCFELKCINDPGWC 96          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.780e-21
Identity = 44/68 (64.71%), Postives = 49/68 (72.06%), Query Frame = 3
Query:  105 GGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDHKWC 308
            GG W NA ATFY              YGNLYSQGYGTNTAALSTALFNNG+SCG+C+E+KC ND +WC
Sbjct:   28 GGAWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGMSCGACFELKCANDPQWC 95          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.956e-20
Identity = 44/66 (66.67%), Postives = 49/66 (74.24%), Query Frame = 3
Query:  111 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDHKWC 308
            GW+NARATFY              YGNLYSQGYGTNTAALSTALFN G SCG+C++IKCV+D KWC
Sbjct:   28 GWVNARATFYGGADASGTMGGACGYGNLYSQGYGTNTAALSTALFNGGQSCGACFQIKCVDDPKWC 93          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 3.336e-20
Identity = 46/86 (53.49%), Postives = 54/86 (62.79%), Query Frame = 3
Query:  105 GGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDHKWCFFFFSKDTPTLFFGREDF 362
            GGGW  A ATFY              YGNLYSQGYG NTAALSTALFNNG SCG+C+E+KC +D KWC       +P++F    +F
Sbjct:   28 GGGWETAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFELKCASDPKWC----HSGSPSIFITATNF 109          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 3.336e-20
Identity = 44/66 (66.67%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  111 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDHKWC 308
            GW+NA ATFY              YGNLYSQGYGTNTAALSTALFNNGLSCG+C+EIKC +D  WC
Sbjct:   29 GWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCQSDGAWC 94          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.432e-20
Identity = 44/68 (64.71%), Postives = 48/68 (70.59%), Query Frame = 3
Query:  105 GGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDHKWC 308
            GG W  A ATFY              YGNLYSQGYGTNTAALST+LFN+G SCG+C+EIKCVND KWC
Sbjct:   31 GGSWQTAHATFYGGNDASGTMGGACGYGNLYSQGYGTNTAALSTSLFNSGQSCGACFEIKCVNDPKWC 98          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.656e-19
Identity = 43/68 (63.24%), Postives = 47/68 (69.12%), Query Frame = 3
Query:  105 GGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDHKWC 308
            GG W NA ATFY              YGNLYSQGYG NTAALSTALFNNG SCG+C+EIKC +D +WC
Sbjct:   33 GGPWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFEIKCTDDPRWC 100          
BLAST of DY260645 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.402e-18
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = 3
Query:  108 GGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDHKWC 308
            GGW    ATFY              YGNLY QGYGTNTAALSTALFNNGL+CG+CYE+KC +D +WC
Sbjct:   28 GGWQGGHATFYGGEDASGTMGGACGYGNLYGQGYGTNTAALSTALFNNGLTCGACYEMKCNDDPRWC 94          
The following BLAST results are available for this feature:
BLAST of DY260645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
EXPA1_ARATH2.468e-2367.57Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXP10_ARATH2.090e-2270.59Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXPA9_ARATH2.310e-2167.65Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]
EXPA4_ARATH8.780e-2164.71Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]
EXP14_ARATH1.956e-2066.67Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXPA6_ARATH3.336e-2053.49Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ... [more]
EXP15_ARATH3.336e-2066.67Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXP16_ARATH7.432e-2064.71Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXPA3_ARATH1.656e-1963.24Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXPA8_ARATH1.402e-1861.19Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP13YC23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260645 ID=DY260645; Name=DY260645; organism=Citrus clementina; type=EST; length=964bp
CTCTACTCTGCCTTTGGGCTTCCAATTTCTCCAAGAAAATGTATTTTGCT
GGGTTTTTCTCGTTGGGTTTCCTTGCATTGGTGTCCTCCGTTCATGCTAA
TGGAGGCGGTGGGTGGATTAATGCTCGTGCCACTTTCTATGGTGGTGGCG
ATGCTTCAGGGACTATGGGTGGGGCTTGTGGCTATGGGAATCTGTATAGC
CAGGGTTATGGAACGAACACTGCAGCCTTGAGCACGGCTTTGTTCAACAA
CGGTTTGAGCTGTGGGTCTTGCTATGAGATTAAATGTGTTAATGACCACA
AATGGTGTTTTTTTTTTTTCAGTAAGGACACGCCTACACTTTTTTTTGGA
AGGGAAGACTTCTCATGATTATAAAAATAGTTCGATTGGAGCACTAAGCC
ATACAATTATTAAGATACATTGCCATTGATTTCTAATTATGTGATTCTAA
TTAAATAATAAATATAAAACAAGAATTAAAAACGTACTACAAACCTATAT
AATAGTACTAATATTTATAATTTACACATCTCTACTTAGTAAAGAGACAT
ACATATCAATCATTTATCTCGAAAAATTGTTGTAATGACTATAATAACAT
ATATAAATGTAAACTTAAATATTATAAATAACACTAAAATTAAAAATAAT
ATATATCTCTACTAAAATATCATTATTTCTATCCATCGCATAAATCCATA
AAATAATATAATCTATAACAACACTATAGACAAAAAAATAAAAATCTGAC
TAACATAATTACAAATTATATAAATATTTAGATAATGCATAATATTTATA
TCATAAATTAAATAATCAGTAAAATTTTATAGACAAGTGAATCCAAACCT
AAACTGGACTGTATCAGCACAAGCGATCGAACTACTAACGATCAATACAT
ACTAATAACAAAGCTACAGACAATTAAAAAAGAAAAATAAGTAAAATAGA
AAAAAACAATAACC
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