DY260673
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY260673 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 2.080e-38 Identity = 93/149 (62.42%), Postives = 109/149 (73.15%), Query Frame = 3 Query: 3 MMQPFMLPRGRVYRYPSGRGMPDVSMPGVGGMLPIPYGDMAAMPLRDAPISQPVPIGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPADQLASLSLN 449 MMQ M PRGR++RYP GRG G G + P G+ + P+ IGALAS L+NA+PEQQRTMLGE LYPLVEQ+E ++AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM+VLR+VA AG +QLASL+L+ Sbjct: 503 MMQQQMHPRGRMFRYPQGRG-------GSGDVPPYDMGN-----------NMPLTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSVA----AGGATEQLASLNLS 629
BLAST of DY260673 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2) HSP 1 Score: 112.079 bits (279), Expect = 4.974e-24 Identity = 64/116 (55.17%), Postives = 77/116 (66.38%), Query Frame = 3 Query: 93 GMLPIPYGDMAAMPLRDAPISQPVP--IGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPADQLA 434 G++P+P A +P P I LAS LA ASP++ MLG++LYPLVEQ EP AAKVTGMLLEMDQ E+LHLLESPEALKAKV+EA++VLR A + DQ A Sbjct: 548 GIIPLPLNASANSHNAPQRSHKPTPLTISKLASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVLRRSADPAAVSSVDDQFA 663
BLAST of DY260673 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.600e-22 Identity = 61/114 (53.51%), Postives = 83/114 (72.81%), Query Frame = 3 Query: 51 SGRGMPDVSMPG--VGGMLPIPYGDMAAMPLRDAPISQPVPIGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 386 +GR D S+P + ++P+P D +++ + AP+ +PI L S+LA+ASP + MLGE LYPLVE+ EP AKVTGMLLEMDQ E+LHL+ESPEALK+KV+EA++VLR Sbjct: 535 NGRNGMDSSVPQGILPPIIPLPI-DASSISHQKAPL---LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLR 644
BLAST of DY260673 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.824e-19 Identity = 64/130 (49.23%), Postives = 80/130 (61.54%), Query Frame = 3 Query: 42 RYPSG-RGMPDVSMPGVGGMLPIPYGDMAAMPLRDAPISQPVPIGAL-ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPAD 425 R P+G G P + V G P+P G AA P QP GAL A+ALA ASPE+Q+ MLGE +YP V +P+ A K+TGM+LE+ TE+LHLLE EAL AKV EA+EVL+ Q AG A+ Sbjct: 517 RPPTGVNGAPRPAGQPVPGQ-PMPRGP-AARPAGRPEADQP---GALTAAALAKASPEEQKQMLGEAIYPKVAASQPELAGKLTGMILELPVTELLHLLEESEALDAKVNEALEVLKEYQQNDSAGAEAE 641
BLAST of DY260673 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 8.217e-19 Identity = 67/174 (38.51%), Postives = 92/174 (52.87%), Query Frame = 3 Query: 6 MQPFMLPRGRVY-----RYPSGRGMPDVSMPGVGGMLPIPYGD-MAAMPL----------RDAPISQP---VPIGAL-ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM----EVLRNVAQQQQAGNPADQLASLSLNDN 455 MQ +P G Y ++ GRG V PG+GG + YG +PL R + QP P+G L A AL+ A P+QQ+ MLGE LYP ++ +P+ A K+TGMLLEMD TE+L LLE EAL+AKV EA+ E ++N + + A P + +N Sbjct: 559 MQGPGIPNGMGYPMVQGQFGGGRGRGQV--PGMGGPMRGGYGGGRGGVPLGGQMRPGQGGRGQAVGQPGPETPVGVLTAQALSAAPPQQQKQMLGEALYPKIQATQPELAGKITGMLLEMDNTELLGLLEDDEALRAKVDEALSVYDEYMKNKSDEPAAEKPKEAAQEAPAEEN 730
BLAST of DY260673 vs. ExPASy Swiss-Prot
Match: PABP_ASPCL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus clavatus GN=pab1 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 2.391e-18 Identity = 64/141 (45.39%), Postives = 81/141 (57.45%), Query Frame = 3 Query: 27 RGRVYRYPSGRGMPDVSMPGVGGML--PIPYG----DMAAMPLRDAPISQPVPIGAL-ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGN-PAD 425 RG+V P G+GM G GG P P G + AA P A + P GAL A AL A+P QQ+ MLGE LYP ++ +P+ A K+TGMLLEMD TE+L LLE +AL+AKV EA+ V + + G PAD Sbjct: 599 RGQVPGMPMGQGMRGPGYQGRGGPQGGPRPQGGRGQNAAAQP---AAGREEAPAGALTAQALNAAAPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLGLLEDDDALRAKVDEALSVYDEYMKNKGEGEAPAD 736
BLAST of DY260673 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 3.452e-17 Identity = 42/83 (50.60%), Postives = 62/83 (74.70%), Query Frame = 3 Query: 180 ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPADQ 428 AS+LA+A P++Q+ MLGE LYPL+ ++ P A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL+ ++ + A Q Sbjct: 544 ASSLASAPPQEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQAHQAKENSQKSAQQ 626
BLAST of DY260673 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 7.691e-17 Identity = 53/122 (43.44%), Postives = 72/122 (59.02%), Query Frame = 3 Query: 33 RVYRYPSGRGMPDVSMPGVGGMLPIPYGDM---AAMPLRDAPISQPVP-IGAL-ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 383 R+ P+ G + VG +P G + MP R + P P G L A +LA A+P +Q+ MLGE LYPL+ + +P+ A K+TGMLLEMD E+LHL+ES AL+ KV EA+ VL Sbjct: 520 RIPAAPNANGPRNGGPSPVGAPQGLPAGSIPRGGQMPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQEKVDEALRVL 641
BLAST of DY260673 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 1.713e-16 Identity = 45/89 (50.56%), Postives = 62/89 (69.66%), Query Frame = 3 Query: 180 ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPADQLASLSL 446 AS LA A P++Q+ MLGE +YP++ ++ P A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL Q QA A + A SL Sbjct: 544 ASLLAGAPPQEQKQMLGERIYPVIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVL----QAHQAKENAQKSAQPSL 628
BLAST of DY260673 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 2.238e-16 Identity = 44/86 (51.16%), Postives = 62/86 (72.09%), Query Frame = 3 Query: 180 ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPADQLAS 437 AS LA A P++Q+ MLGE L+PL++ + P A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL Q QA A ++ S Sbjct: 545 ASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL----QAHQAKEAAQKVVS 626 The following BLAST results are available for this feature:
BLAST of DY260673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 32
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Sequences
The
following sequences are available for this feature:
EST sequence >DY260673 ID=DY260673; Name=DY260673; organism=Citrus clementina; type=EST; length=964bpback to top |