DY260673

Overview
NameDY260673
Unique NameDY260673
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length964
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig708 contig Ccv1_Contig708:292..1255. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260673 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 2.080e-38
Identity = 93/149 (62.42%), Postives = 109/149 (73.15%), Query Frame = 3
Query:    3 MMQPFMLPRGRVYRYPSGRGMPDVSMPGVGGMLPIPYGDMAAMPLRDAPISQPVPIGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPADQLASLSLN 449
            MMQ  M PRGR++RYP GRG       G G + P   G+           + P+ IGALAS L+NA+PEQQRTMLGE LYPLVEQ+E ++AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM+VLR+VA    AG   +QLASL+L+
Sbjct:  503 MMQQQMHPRGRMFRYPQGRG-------GSGDVPPYDMGN-----------NMPLTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSVA----AGGATEQLASLNLS 629          
BLAST of DY260673 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 4.974e-24
Identity = 64/116 (55.17%), Postives = 77/116 (66.38%), Query Frame = 3
Query:   93 GMLPIPYGDMAAMPLRDAPISQPVP--IGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPADQLA 434
            G++P+P    A          +P P  I  LAS LA ASP++   MLG++LYPLVEQ EP  AAKVTGMLLEMDQ E+LHLLESPEALKAKV+EA++VLR  A      +  DQ A
Sbjct:  548 GIIPLPLNASANSHNAPQRSHKPTPLTISKLASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVLRRSADPAAVSSVDDQFA 663          
BLAST of DY260673 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.600e-22
Identity = 61/114 (53.51%), Postives = 83/114 (72.81%), Query Frame = 3
Query:   51 SGRGMPDVSMPG--VGGMLPIPYGDMAAMPLRDAPISQPVPIGALASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 386
            +GR   D S+P   +  ++P+P  D +++  + AP+   +PI  L S+LA+ASP  +  MLGE LYPLVE+ EP   AKVTGMLLEMDQ E+LHL+ESPEALK+KV+EA++VLR
Sbjct:  535 NGRNGMDSSVPQGILPPIIPLPI-DASSISHQKAPL---LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLR 644          
BLAST of DY260673 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.824e-19
Identity = 64/130 (49.23%), Postives = 80/130 (61.54%), Query Frame = 3
Query:   42 RYPSG-RGMPDVSMPGVGGMLPIPYGDMAAMPLRDAPISQPVPIGAL-ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPAD 425
            R P+G  G P  +   V G  P+P G  AA P       QP   GAL A+ALA ASPE+Q+ MLGE +YP V   +P+ A K+TGM+LE+  TE+LHLLE  EAL AKV EA+EVL+   Q   AG  A+
Sbjct:  517 RPPTGVNGAPRPAGQPVPGQ-PMPRGP-AARPAGRPEADQP---GALTAAALAKASPEEQKQMLGEAIYPKVAASQPELAGKLTGMILELPVTELLHLLEESEALDAKVNEALEVLKEYQQNDSAGAEAE 641          
BLAST of DY260673 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 8.217e-19
Identity = 67/174 (38.51%), Postives = 92/174 (52.87%), Query Frame = 3
Query:    6 MQPFMLPRGRVY-----RYPSGRGMPDVSMPGVGGMLPIPYGD-MAAMPL----------RDAPISQP---VPIGAL-ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM----EVLRNVAQQQQAGNPADQLASLSLNDN 455
            MQ   +P G  Y     ++  GRG   V  PG+GG +   YG     +PL          R   + QP    P+G L A AL+ A P+QQ+ MLGE LYP ++  +P+ A K+TGMLLEMD TE+L LLE  EAL+AKV EA+    E ++N + +  A  P +        +N
Sbjct:  559 MQGPGIPNGMGYPMVQGQFGGGRGRGQV--PGMGGPMRGGYGGGRGGVPLGGQMRPGQGGRGQAVGQPGPETPVGVLTAQALSAAPPQQQKQMLGEALYPKIQATQPELAGKITGMLLEMDNTELLGLLEDDEALRAKVDEALSVYDEYMKNKSDEPAAEKPKEAAQEAPAEEN 730          
BLAST of DY260673 vs. ExPASy Swiss-Prot
Match: PABP_ASPCL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus clavatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.391e-18
Identity = 64/141 (45.39%), Postives = 81/141 (57.45%), Query Frame = 3
Query:   27 RGRVYRYPSGRGMPDVSMPGVGGML--PIPYG----DMAAMPLRDAPISQPVPIGAL-ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGN-PAD 425
            RG+V   P G+GM      G GG    P P G    + AA P   A   +  P GAL A AL  A+P QQ+ MLGE LYP ++  +P+ A K+TGMLLEMD TE+L LLE  +AL+AKV EA+ V     + +  G  PAD
Sbjct:  599 RGQVPGMPMGQGMRGPGYQGRGGPQGGPRPQGGRGQNAAAQP---AAGREEAPAGALTAQALNAAAPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLGLLEDDDALRAKVDEALSVYDEYMKNKGEGEAPAD 736          
BLAST of DY260673 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.452e-17
Identity = 42/83 (50.60%), Postives = 62/83 (74.70%), Query Frame = 3
Query:  180 ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPADQ 428
            AS+LA+A P++Q+ MLGE LYPL+ ++ P  A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL+    ++ +   A Q
Sbjct:  544 ASSLASAPPQEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQAHQAKENSQKSAQQ 626          
BLAST of DY260673 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.691e-17
Identity = 53/122 (43.44%), Postives = 72/122 (59.02%), Query Frame = 3
Query:   33 RVYRYPSGRGMPDVSMPGVGGMLPIPYGDM---AAMPLRDAPISQPVP-IGAL-ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 383
            R+   P+  G  +     VG    +P G +     MP R    + P P  G L A +LA A+P +Q+ MLGE LYPL+ + +P+ A K+TGMLLEMD  E+LHL+ES  AL+ KV EA+ VL
Sbjct:  520 RIPAAPNANGPRNGGPSPVGAPQGLPAGSIPRGGQMPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQEKVDEALRVL 641          
BLAST of DY260673 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.713e-16
Identity = 45/89 (50.56%), Postives = 62/89 (69.66%), Query Frame = 3
Query:  180 ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPADQLASLSL 446
            AS LA A P++Q+ MLGE +YP++ ++ P  A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL    Q  QA   A + A  SL
Sbjct:  544 ASLLAGAPPQEQKQMLGERIYPVIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVL----QAHQAKENAQKSAQPSL 628          
BLAST of DY260673 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.238e-16
Identity = 44/86 (51.16%), Postives = 62/86 (72.09%), Query Frame = 3
Query:  180 ASALANASPEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQQAGNPADQLAS 437
            AS LA A P++Q+ MLGE L+PL++ + P  A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL    Q  QA   A ++ S
Sbjct:  545 ASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL----QAHQAKEAAQKVVS 626          
The following BLAST results are available for this feature:
BLAST of DY260673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
PABP2_ARATH2.080e-3862.42Polyadenylate-binding protein 2 OS=Arabidopsis tha... [more]
PABP5_ARATH4.974e-2455.17Polyadenylate-binding protein 5 OS=Arabidopsis tha... [more]
PABP3_ARATH1.600e-2253.51Polyadenylate-binding protein 3 OS=Arabidopsis tha... [more]
PABP_USTMA2.824e-1949.23Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_EMENI8.217e-1938.51Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPCL2.391e-1845.39Polyadenylate-binding protein, cytoplasmic and nuc... [more]
EPAB_XENTR3.452e-1750.60Embryonic polyadenylate-binding protein OS=Xenopus... [more]
PABP_CRYNE7.691e-1743.44Polyadenylate-binding protein, cytoplasmic and nuc... [more]
EPABA_XENLA1.713e-1650.56Embryonic polyadenylate-binding protein A OS=Xenop... [more]
PABPB_XENLA2.238e-1651.16Polyadenylate-binding protein 1-B OS=Xenopus laevi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP13YE03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260673 ID=DY260673; Name=DY260673; organism=Citrus clementina; type=EST; length=964bp
CAATGATGCAGCCTTTTATGCTTCCAAGGGGGCGTGTCTACCGCTACCCG
TCAGGCCGTGGCATGCCAGATGTTTCCATGCCTGGTGTCGGAGGGATGCT
ACCTATTCCATATGGTGACATGGCTGCTATGCCGCTGCGTGATGCCCCTA
TTTCACAGCCAGTTCCCATTGGGGCTTTGGCTTCTGCCCTTGCAAATGCT
TCTCCTGAGCAGCAGAGGACGATGCTGGGAGAGAATCTCTACCCACTTGT
AGAACAGCTGGAGCCTGATGCTGCAGCTAAGGTTACGGGAATGCTTTTGG
AGATGGATCAGACTGAGGTTTTGCACTTGCTCGAGTCACCAGAAGCTCTG
AAAGCGAAAGTGGCTGAGGCAATGGAGGTTCTGAGGAATGTTGCTCAACA
ACAGCAGGCTGGTAATCCGGCTGATCAACTAGCCTCATTATCATTGAATG
ATAACTTGGTTTCTTAAGTTGCGAGCTGCAGTATTTCAAAAATGCTAATT
TTGAATTTATTCTAAATGTGGCTTGATTATAGTTATTAATACTATTGAAT
TGGATAATTTATATGTTAAGTTACAATAATCTCTTAGAAATATAGAAAAA
TAAAAATATTTATACAGATAGAAAAATTAGTGAAAATTAAGACAGAGTCA
AAAGAATAATACAATGACAACACATATATAGAAAACCATTACCAAATATT
AAGAAGTAACCTCAACTTACCAAAATAAATTTTCTTACAATCTCTATCAA
CAAATACAATTATAAATTATTCATAAAATATCGATAATTAAAAAATAAAA
TTATCTAATTTGTAAGATACTGTTAAAAGCATAATATTTTCCAAACATTA
CTTAATAGTGAACATTAATGCGAAAGACATTATTCGTATTACACTTGTGT
TTAATTAATACTTAAAATAATCTCTAATTCTATATATAATATCAATGCCA
ATAATACAATTTAT
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