DY260719

Overview
NameDY260719
Unique NameDY260719
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1017
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14081 contig Ccv1_Contig14081:429..1445. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260719 vs. ExPASy Swiss-Prot
Match: SERA_ARATH (D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2)

HSP 1 Score: 323.553 bits (828), Expect = 1.174e-87
Identity = 160/199 (80.40%), Postives = 183/199 (91.96%), Query Frame = 2
Query:   44 LRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKFGIPHLTRVGSFGVDASLEGNLILCRQVDQPGMIGKVGNILGELNVNVNFMS 640
            L+GELSATA+NAPMV  EVLSEL PY+VLA+KLGRLAVQL SGG G++S++++YRSARD DDLDTR+LRAMITKGIIEPIS S++NLVNADF AKQKGLRISEER+V DSSPE+P+DSIQVQ+ NV+S FA AVS+ G+ISIEGKVK+G+PHLT VGSFGVD SLEGNLILCRQVDQPGMIG+VGNILGE NVNVNFMS
Sbjct:  384 LKGELSATAVNAPMVAPEVLSELTPYIVLAEKLGRLAVQLASGGKGVQSIRVVYRSARDRDDLDTRLLRAMITKGIIEPISDSYVNLVNADFIAKQKGLRISEERMVVDSSPEYPVDSIQVQILNVESNFAGAVSDAGDISIEGKVKYGVPHLTCVGSFGVDVSLEGNLILCRQVDQPGMIGQVGNILGEQNVNVNFMS 582          
BLAST of DY260719 vs. ExPASy Swiss-Prot
Match: SERA_METJA (D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii GN=serA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.158e-18
Identity = 61/198 (30.81%), Postives = 103/198 (52.02%), Query Frame = 2
Query:   44 LRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKFGIPHLTRVGSFGVDASLEGNLILCRQVDQPGMIGKVGNILGELNVNVNFM 637
            LRGEL+   +N P +P E L +L PY++LA+ LG + +Q++ G   +  V+LIY      +  D  +++    KG++ PI  + INLVNA   AK + + + E    + +S E   ++I++           A S+  + SI G +    P +  V  + V    EG L + + +D+PG IG+V   LG+  +N+  M
Sbjct:  302 LRGELAENVVNMPNIPQEKLGKLKPYMLLAEMLGNIVMQVLDG--SVNRVELIYSGELAKEKTD--LIKRAFLKGLLSPILLAGINLVNAPIIAKNRNINVVE----SSTSEEKYGNAIKI----------TAESDKKKFSIVGAIINNKPVILEVDGYEVSFIPEGVLAIIKHIDRPGTIGRVCITLGDYGINIASM 481          
BLAST of DY260719 vs. ExPASy Swiss-Prot
Match: SERA_METTH (D-3-phosphoglycerate dehydrogenase OS=Methanobacterium thermoautotrophicum GN=serA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.576e-14
Identity = 56/197 (28.43%), Postives = 93/197 (47.21%), Query Frame = 2
Query:   47 RGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKFGIPHLTRVGSFGVDASLEGNLILCRQVDQPGMIGKVGNILGELNVNVNFM 637
            +G      +N P++ SE    L PY+ LA+K+G +  Q + G   I+ + + Y    +  ++   IL   + + I+ PI    +NL+NA   AK++G+ ++E R     S      SI +         A A S+ G  S+E       P +  +  + VD   EG +I+ R  D PG IG +G  LG+  +N+  M
Sbjct:  304 QGGAPRNVLNMPVMDSETYKSLKPYIELAEKMGAIIAQALPGN--IEKLDVTY--CGELAEMQFDILTRTMLQAILNPILTEPVNLINAPSIAKKRGIMVTEAR----RSESDGYRSIII---------ATAESDRGGFSVEA-THIKEPTIIGINGYRVDVKPEGTMIIARYRDLPGTIGAIGTKLGQHGINIATM 482          
BLAST of DY260719 vs. ExPASy Swiss-Prot
Match: SERA_SYNY3 (D-3-phosphoglycerate dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=serA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.122e-13
Identity = 66/236 (27.97%), Postives = 109/236 (46.19%), Query Frame = 2
Query:   44 LRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAA--AVSENGEISIEGKVKFGIPHLTRVGSFGVDASLEGNLILCRQVDQPGMIGKVGNILGELNVNVNFMSCKEELSRGXXXXXXXXXDQ*PIPASPQRK*VKVPG 745
            L G  + +A+N P +  +V+ +L PY+ LA+ LG L  QL  G     +V L    A   +  +++ L     KG++       +N VNA   AK++G+R+ E +   D+S      S+ ++ +    + +A  A+  NGEI I           T V  F ++      ++     D PG+IGK+G++LG  NVN+  M    ++ RG         D  P+P     +  KV G
Sbjct:  329 LLGLPARSAVNIPGLTPDVMEKLRPYLKLAETLGTLVGQLAGGRIDRLTVCLQGDLA---EYTNSQPLVVAAIKGLLSQALRERVNYVNAAIEAKERGIRVIETK---DASVRDYSGSLHLKATGTMGEHSATGALLSNGEIRI-----------TDVDEFPINVPPNNYMLFTLHRDMPGIIGKIGSLLGSFNVNIASMQVGRKIVRGDAIMALSLDD--PLPDGLLSEITKVAG 545          
BLAST of DY260719 vs. ExPASy Swiss-Prot
Match: SERA_ARCFU (D-3-phosphoglycerate dehydrogenase OS=Archaeoglobus fulgidus GN=serA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.055e-11
Identity = 49/188 (26.06%), Postives = 91/188 (48.40%), Query Frame = 2
Query:   68 AINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKFGIPH-LTRVGSFGVDASLEGNLILCRQVDQPGMIGKVGNILGELNVNV 628
            A+N P +       + P++ LA+K+G++A   V  G  I+ VK+         +  T  +   + KG+ EPI ++ INLV+A   A ++G+ I E +V +              + + +S     V  NG+        FG  + + ++  + V+   +G+ I+    D+PG+IG+VG + G  N+N+
Sbjct:  310 AVNLPSIEPSDFEFMMPFLTLAEKMGKIAS--VRLGGAIRKVKVTCSGKLATKN--TEFVTRALLKGLFEPILSNEINLVSAKPVAVERGITIEESKVES--------------VEHYESLLEVWVESNGKEMYLAGTCFGNEYRILKIDVYNVNFVPKGHYIISLHEDKPGVIGRVGTLFGRNNINI 479          
The following BLAST results are available for this feature:
BLAST of DY260719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SERA_ARATH1.174e-8780.40D-3-phosphoglycerate dehydrogenase, chloroplastic ... [more]
SERA_METJA1.158e-1830.81D-3-phosphoglycerate dehydrogenase OS=Methanocaldo... [more]
SERA_METTH6.576e-1428.43D-3-phosphoglycerate dehydrogenase OS=Methanobacte... [more]
SERA_SYNY31.122e-1327.97D-3-phosphoglycerate dehydrogenase OS=Synechocysti... [more]
SERA_ARCFU3.055e-1126.06D-3-phosphoglycerate dehydrogenase OS=Archaeoglobu... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP13YG10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260719 ID=DY260719; Name=DY260719; organism=Citrus clementina; type=EST; length=1017bp
GGAAGGTGTAGCTATTGAAATAGCAGAGGCTGTGGTCGGAGCATTGAGGG
GAGAGCTTTCTGCTACTGCAATAAATGCTCCCATGGTTCCATCAGAGGTC
TTGTCAGAGTTGGCTCCTTATGTTGTGCTAGCTAAGAAGCTTGGCAGGCT
GGCTGTGCAGCTGGTATCCGGAGGGAGTGGCATTAAGTCTGTGAAGCTTA
TCTACCGATCAGCTCGTGACCCTGATGACTTGGACACAAGAATTCTCCGA
GCTATGATCACAAAAGGCATCATTGAACCGATATCAGCCTCGTTCATCAA
CCTTGTCAATGCAGATTTCACAGCTAAACAGAAAGGCCTCCGGATTAGCG
AAGAGCGTGTGGTAGCTGACTCGTCCCCTGAGTTCCCTATCGATTCAATC
CAGGTTCAGTTATCCAACGTAGATTCCAAATTTGCAGCTGCTGTTTCAGA
AAATGGAGAGATAAGCATTGAAGGGAAAGTGAAATTTGGGATACCTCACC
TGACACGCGTGGGATCGTTTGGTGTTGATGCGAGCCTGGAAGGGAACCTC
ATCCTGTGCCGGCAGGTTGATCAGCCTGGCATGATTGGCAAGGTTGGGAA
CATACTTGGTGAGCTTAATGTCAATGTGAACTTCATGAGTTGTAAAGAAG
AACTTTCAAGAGGAATCATGTGAATCATGGTCATCGTGATTGATCAATAA
CCAATTCCAGCTTCCCCTCAACGGAAATAAGTAAAAGTGCCTGGTTTTAT
AATTAAGTTTGTAATATCTTCATATAATCATTCGTGTTAGATTTTTGAAC
TAATTCGGCCTTCCTTATCCGCCTATCTTGCTACTGGTCAAGTAAATTAG
AACCACCTACGTCATCGACACCTAAAGAAATACTAAGAAATATCATATAT
AGATGTATTACATAACTCGAAACAACTATACTATAGCGACACTACATCCT
ACCTGATCTTGTTTTACCTCCTCTTCAGTACTAGTACTCCGACCTTTCAT
TATCTTTAATTACTTTC
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