DY260728

Overview
NameDY260728
Unique NameDY260728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY260728 vs. ExPASy Swiss-Prot
Match: RAP1_ARATH (Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.435e-11
Identity = 39/106 (36.79%), Postives = 57/106 (53.77%), Query Frame = 2 
Query:    5 IVQNRPEWWVYSIFWQPLKDVNGRLVLSWGDGYFRGSKDFATRAAAGKQGAGNEPKFGFFLERKKVSKEV-QVHFGEDMDLDRMVDGDVTDGEWYYTVSVIR-FIC 316
            +++   E W Y+IFWQP  D +G  VL WGDGY++G +D A           + P    +  RKKV +E+  +  G     D  VD +VTD EW++ VS+ + F C
Sbjct:   75 LIEGTHEGWTYAIFWQPSYDFSGASVLGWGDGYYKGEEDKANPRRRSSSPPFSTPADQEY--RKKVLRELNSLISGGVAPSDDAVDEEVTDTEWFFLVSMTQSFAC 178
The following BLAST results are available for this feature:
BLAST of DY260728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RAP1_ARATH2.435e-1136.79Transcription factor MYC2 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP13YG19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260728 ID=DY260728; Name=DY260728; organism=Citrus clementina; type=EST; length=741bp
ATTCATTGTTCAAAACCGGCCTGAGTGGTGGGTCTATTCCATCTTCTGGC
AACCACTGAAAGACGTGAACGGCCGCCTTGTTTTATCATGGGGTGATGGC
TATTTCCGCGGGAGCAAAGATTTTGCTACAAGGGCGGCGGCAGGCAAACA
AGGCGCAGGCAACGAGCCGAAATTCGGCTTCTTTTTGGAGAGGAAGAAGG
TGAGCAAAGAGGTTCAAGTTCATTTCGGAGAGGATATGGACTTGGATAGA
ATGGTGGATGGGGATGTTACGGACGGGGAATGGTATTACACAGTGTCGGT
TATCCGTTTCATTTGCAATTGGTGATGGTAGTGCTACTGGGAAAGGTGTT
TAACTCAGGTGATAATTAGTAATTAACTGGTGATCAAGATCATCCTATGG
TACGAGATGATAATATGCAAACCAAGATCTAAGAGCGGGAGTAAGAAATT
AGCACGACGATACAATTACATATGTACTTAGCTAAAAATCGATTTCTGTC
TCAATAAATTAATACAAACTGGAAGCTTGATTGCATTGCGGCACAAGGAT
AGTTCAGGGTCTCTGGATGTTGATCTATCGCCACAATAATAAACACAGCT
AATTTTGTAAAATATAACGCTTAATAACACAAATATTAATCCAAGAATAA
TTAGTAAATTTACATAGAGAAGATACTTTCTCCCAGCTATAATATTAAAA
TTAGCTCTTTAGACAAATTAATAAATACAAAAAATAAATAA
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