DY260748

Overview
NameDY260748
Unique NameDY260748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length981
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY260748 vs. ExPASy Swiss-Prot
Match: ARGD_ALNGL (Acetylornithine aminotransferase, mitochondrial OS=Alnus glutinosa GN=AG118 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.061e-35
Identity = 45/69 (65.22%), Postives = 57/69 (82.61%), Query Frame = 3 
Query:  330 GKGCELYDAEGREYLDLSSGIAVNAHGHGDADWIEADVDQANVLTHVNNMYYSVHNIELAERLVACSYA 536
            GKGC+LYD EGREYLDLS+GIAVN  GH D+DW+ A  +QA  LTHV+N++YS+  +ELA+RLVA S+A
Sbjct:   74 GKGCKLYDPEGREYLDLSAGIAVNVLGHADSDWLRAVTEQAATLTHVSNVFYSIPQVELAKRLVASSFA 142

HSP 2 Score: 48.1358 bits (113), Expect = 2.061e-35
Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:  538 DRVFFVQTGSEANDAAICFARTFHRHTCPESEKPATK 648
            DRVFF  +G+EAN+AAI FAR F R T P+ ++PAT+
Sbjct:  143 DRVFFSNSGTEANEAAIKFARKFQRFTRPDEKQPATE 179

HSP 3 Score: 38.5058 bits (88), Expect = 2.061e-35
Identity = 23/51 (45.10%), Postives = 31/51 (60.78%), Query Frame = 2 
Query:  173 RPMVAAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLA 325
            R +  +A  NVEV   +     G+   +KEVMEA  ++LVGTY R PVVL+
Sbjct:   25 RHLQVSACANVEVQAPSSVKKQGV---SKEVMEAAGRVLVGTYARVPVVLS 72

HSP 4 Score: 24.2534 bits (51), Expect = 2.061e-35
Identity = 10/18 (55.56%), Postives = 12/18 (66.67%), Query Frame = 2 
Query:  632 KSQPQKFVSFHHSLHGRT 685
            K    +FVSF +S HGRT
Sbjct:  174 KQPATEFVSFSNSFHGRT 191
[Close]
BLAST of DY260748 vs. ExPASy Swiss-Prot
Match: ARGD_METJA (Acetylornithine aminotransferase OS=Methanocaldococcus jannaschii GN=argD PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 4.914e-14
Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 3 
Query:  330 GKGCELYDAEGREYLDLSSGIAVNAHGHGDADWIEADVDQANVLTHVNNMYYSVHNIELAERLVACS 530
            GKG E+YD +G++YLD  +GI VN  GH     +EA   QA  L H +N+YY++  I+LA++LV  S
Sbjct:   28 GKGMEVYDIDGKKYLDFLAGIGVNNVGHCHPKVVEAIKKQAETLIHTSNIYYTIPQIKLAKKLVELS 94

HSP 2 Score: 31.187 bits (69), Expect = 4.914e-14
Identity = 13/23 (56.52%), Postives = 17/23 (73.91%), Query Frame = 1 
Query:  538 DRVFFVQTGSEANDAAICFARTF 606
            DR FF  +G+EAN+ AI FAR +
Sbjct:   97 DRAFFCNSGAEANEGAIKFARKY 119

HSP 3 Score: 22.3274 bits (46), Expect = 4.914e-14
Identity = 10/21 (47.62%), Postives = 13/21 (61.90%), Query Frame = 2 
Query:  266 MEAEKKLLVGTYNRAPVVLAE 328
            ++ EKK  +  Y R PVVL E
Sbjct:    7 IDLEKKYHLQIYGRLPVVLVE 27
[Close]
BLAST of DY260748 vs. ExPASy Swiss-Prot
Match: ARGD_DICDI (Probable acetylornithine aminotransferase, mitochondrial OS=Dictyostelium discoideum GN=argD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.932e-14
Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 3 
Query:  330 GKGCELYDAEGREYLDLSSGIAVNAHGHGDADWIEADVDQANVLTHVNNMYYSVHNIELAERLVACSYA*SCVFRPN 560
            GK   LYD +G +YLD  +GIAVNA GH +  W E   +Q+  LTH++N+YY+   IELA+ ++A +     VF  N
Sbjct:   73 GKDSWLYDMKGDKYLDFGAGIAVNALGHSNDGWSEVVANQSKKLTHLSNLYYNQPAIELAQSMIASTPIFDKVFFAN 149

HSP 2 Score: 30.8018 bits (68), Expect = 8.932e-14
Identity = 12/21 (57.14%), Postives = 18/21 (85.71%), Query Frame = 1 
Query:  538 DRVFFVQTGSEANDAAICFAR 600
            D+VFF  +G+EAN+AA+ FA+
Sbjct:  143 DKVFFANSGTEANEAALKFAK 163
[Close]
BLAST of DY260748 vs. ExPASy Swiss-Prot
Match: ARGD_HAEDU (Acetylornithine aminotransferase OS=Haemophilus ducreyi GN=argD PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 8.968e-14
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 3 
Query:  315 LCWQSGKGCELYDAEGREYLDLSSGIAVNAHGHGDADWIEADVDQANVLTHVNNMYYSVHNIELAERLVACS 530
            L    G+GCE++D +G +YLD +SGI VN+ G  D DW+EA + Q + L+H +N++Y+  +  LA+ LV  S
Sbjct:   23 LALSHGQGCEVWDFDGNKYLDFTSGIGVNSLGWADPDWLEAVIAQLHKLSHTSNLFYTEPSARLAKHLVQVS 94

HSP 2 Score: 28.1054 bits (61), Expect = 8.968e-14
Identity = 12/22 (54.55%), Postives = 16/22 (72.73%), Query Frame = 1 
Query:  541 RVFFVQTGSEANDAAICFARTF 606
            RVFF  +G+EAN+ AI  AR +
Sbjct:   98 RVFFANSGAEANEGAIKVARKY 119
[Close]
BLAST of DY260748 vs. ExPASy Swiss-Prot
Match: ARGD_METTH (Acetylornithine aminotransferase OS=Methanobacterium thermoautotrophicum GN=argD PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 1.376e-13
Identity = 28/67 (41.79%), Postives = 39/67 (58.21%), Query Frame = 3 
Query:  330 GKGCELYDAEGREYLDLSSGIAVNAHGHGDADWIEADVDQANVLTHVNNMYYSVHNIELAERLVACS 530
            GKG  ++D EG  Y+D  +G+AVN+ GH       A   QA  L H +N+YY+   +ELA+ L A S
Sbjct:   28 GKGATVWDIEGNSYIDCFAGVAVNSIGHAHPKVALAICHQAQRLIHSSNIYYTREQVELAKLLTAIS 94

HSP 2 Score: 31.9574 bits (71), Expect = 1.376e-13
Identity = 14/23 (60.87%), Postives = 17/23 (73.91%), Query Frame = 1 
Query:  538 DRVFFVQTGSEANDAAICFARTF 606
            DRVFF  +G+EAN+ AI  AR F
Sbjct:   97 DRVFFANSGAEANEGAIKLARKF 119

HSP 3 Score: 29.261 bits (64), Expect = 1.376e-13
Identity = 10/25 (40.00%), Postives = 20/25 (80.00%), Query Frame = 2 
Query:  251 NNKEVMEAEKKLLVGTYNRAPVVLA 325
            +++E++E E+K ++ TY R P+VL+
Sbjct:    2 DSEEIIELERKFIMQTYTRQPIVLS 26
[Close]
BLAST of DY260748 vs. ExPASy Swiss-Prot
Match: ARGD_ARCFU (Acetylornithine aminotransferase OS=Archaeoglobus fulgidus GN=argD PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 4.410e-13
Identity = 27/65 (41.54%), Postives = 43/65 (66.15%), Query Frame = 3 
Query:  324 QSGKGCELYDAEGREYLDLSSGIAVNAHGHGDADWIEADVDQANVLTHVNNMYYSVHNIELAERL 518
            + G+GC +YD  G+ YLDL +GIA  + GH ++  +E   +Q   L H++N+YY+   +ELAE+L
Sbjct:   23 ERGEGCYVYDVNGKRYLDLVAGIATVSIGHCNSHLVERLKEQLEKLIHISNLYYTTPQVELAEKL 87

HSP 2 Score: 27.335 bits (59), Expect = 4.410e-13
Identity = 12/21 (57.14%), Postives = 16/21 (76.19%), Query Frame = 1 
Query:  538 DRVFFVQTGSEANDAAICFAR 600
            DR FF  +G+EA +AA+ FAR
Sbjct:   94 DRFFFCNSGAEAVEAALKFAR 114

HSP 3 Score: 23.483 bits (49), Expect = 4.410e-13
Identity = 10/17 (58.82%), Postives = 11/17 (64.71%), Query Frame = 2 
Query:  644 QKFVSFHHSLHGRTKAA 694
            +KFVSF    HGRT  A
Sbjct:  120 KKFVSFTGDFHGRTMGA 136

HSP 4 Score: 21.1718 bits (43), Expect = 4.410e-13
Identity = 9/19 (47.37%), Postives = 13/19 (68.42%), Query Frame = 2 
Query:  266 MEAEKKLLVGTYNRAPVVL 322
            +E EKK ++ TY R  VV+
Sbjct:    4 IEREKKHILQTYTRQKVVI 22
[Close]
BLAST of DY260748 vs. ExPASy Swiss-Prot
Match: ARGD_XANCP (Acetylornithine aminotransferase OS=Xanthomonas campestris pv. campestris GN=argD PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.426e-13
Identity = 34/73 (46.58%), Postives = 49/73 (67.12%), Query Frame = 3 
Query:  312 QLCWQSGKGCELYDAEGREYLDLSSGIAVNAHGHGDADWIEADVDQANVLTHVNNMYYSVHNIELAERLVACS 530
            Q+  + G+G  ++D +GREYLDLSSGIAV+  GH D D + A  +QA  L H +N+++S   ++LAE LV  S
Sbjct:   23 QVVLERGQGSRVWDDQGREYLDLSSGIAVSGLGHNDPDLMAALTEQAGKLWHTSNVFFSAPPLKLAEELVTAS 95

HSP 2 Score: 24.6386 bits (52), Expect = 9.426e-13
Identity = 15/41 (36.59%), Postives = 22/41 (53.66%), Query Frame = 1 
Query:  541 RVFFVQTGSEANDAAICFARTFHRHTCPESEKPATKVRIVS 663
            +VF   +G+EAN+AAI   R +         +PA K  IV+
Sbjct:  100 KVFLCNSGTEANEAAIKLVRKW----ASSQGRPADKRVIVT 136
[Close]
BLAST of DY260748 vs. ExPASy Swiss-Prot
Match: ARGD_XANAC (Acetylornithine aminotransferase OS=Xanthomonas axonopodis pv. citri GN=argD PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.426e-13
Identity = 34/73 (46.58%), Postives = 49/73 (67.12%), Query Frame = 3 
Query:  312 QLCWQSGKGCELYDAEGREYLDLSSGIAVNAHGHGDADWIEADVDQANVLTHVNNMYYSVHNIELAERLVACS 530
            Q+  + G+G  ++D  GREYLDLSSGIAV+  GH D D + A  +QA  L H +N+++S   ++LAE LV+ S
Sbjct:   23 QVVLERGQGSRVWDDAGREYLDLSSGIAVSGLGHNDPDLVAALTEQAGKLWHTSNVFFSAPPLKLAEELVSAS 95

HSP 2 Score: 24.6386 bits (52), Expect = 9.426e-13
Identity = 15/41 (36.59%), Postives = 22/41 (53.66%), Query Frame = 1 
Query:  541 RVFFVQTGSEANDAAICFARTFHRHTCPESEKPATKVRIVS 663
            +VF   +G+EAN+AAI   R +         +PA K  IV+
Sbjct:  100 KVFLCNSGTEANEAAIKLVRKW----ASSQGRPADKRVIVT 136
[Close]
BLAST of DY260748 vs. ExPASy Swiss-Prot
Match: ARGD_XYLFA (Acetylornithine aminotransferase OS=Xylella fastidiosa GN=argD PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 1.071e-12
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 3 
Query:  330 GKGCELYDAEGREYLDLSSGIAVNAHGHGDADWIEADVDQANVLTHVNNMYYSVHNIELAERLVACS 530
            G+G  ++D +GR+YLDL++GIAV   GH D D + A V+QA  L H +N++YS  ++ LA+ LV  S
Sbjct:   29 GQGSRVWDEQGRDYLDLAAGIAVCCLGHCDPDLVAALVEQAGRLWHTSNVFYSEPSLRLAQELVDVS 95

HSP 2 Score: 25.7942 bits (55), Expect = 1.071e-12
Identity = 11/21 (52.38%), Postives = 15/21 (71.43%), Query Frame = 1 
Query:  538 DRVFFVQTGSEANDAAICFAR 600
            +RVF   +G+EAN+AAI   R
Sbjct:   99 ERVFLCSSGTEANEAAIKLVR 119

HSP 3 Score: 24.2534 bits (51), Expect = 1.071e-12
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 2 
Query:  653 VSFHHSLHGRTKAA 694
            V+FH S HGRT AA
Sbjct:  135 VTFHGSFHGRTLAA 148
[Close]
BLAST of DY260748 vs. ExPASy Swiss-Prot
Match: ARGD_ANASP (Acetylornithine aminotransferase OS=Anabaena sp. (strain PCC 7120) GN=argD PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 1.223e-12
Identity = 29/74 (39.19%), Postives = 41/74 (55.41%), Query Frame = 3 
Query:  315 LCWQSGKGCELYDAEGREYLDLSSGIAVNAHGHGDADWIEADVDQANVLTHVNNMYYSVHNIELAERLVACSYA 536
            L  + G GC ++D +G+EYLD  +GIA    GH     +EA   Q   L HV+N+YY     ELA+ ++  S A
Sbjct:   42 LALERGAGCRVWDTQGKEYLDFVAGIATCTLGHAHPAMVEAVTRQIQKLHHVSNLYYIPEQGELAQWIIQHSCA 115

HSP 2 Score: 36.965 bits (84), Expect = 1.223e-12
Identity = 19/34 (55.88%), Postives = 24/34 (70.59%), Query Frame = 1 
Query:  538 DRVFFVQTGSEANDAAICFARTFHRHTCPESEKP 639
            DRVFF  +G+EAN+AAI  AR +  HT  + EKP
Sbjct:  116 DRVFFCNSGAEANEAAIKLARKY-AHTVLDIEKP 148
The following BLAST results are available for this feature:
BLAST of DY260748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
ARGD_ALNGL2.061e-3565.22Acetylornithine aminotransferase, mitochondrial OS... [more]
ARGD_METJA4.914e-1446.27Acetylornithine aminotransferase OS=Methanocaldoco... [more]
ARGD_DICDI8.932e-1444.16Probable acetylornithine aminotransferase, mitocho... [more]
ARGD_HAEDU8.968e-1443.06Acetylornithine aminotransferase OS=Haemophilus du... [more]
ARGD_METTH1.376e-1341.79Acetylornithine aminotransferase OS=Methanobacteri... [more]
ARGD_ARCFU4.410e-1341.54Acetylornithine aminotransferase OS=Archaeoglobus ... [more]
ARGD_XANCP9.426e-1346.58Acetylornithine aminotransferase OS=Xanthomonas ca... [more]
ARGD_XANAC9.426e-1346.58Acetylornithine aminotransferase OS=Xanthomonas ax... [more]
ARGD_XYLFA1.071e-1246.27Acetylornithine aminotransferase OS=Xylella fastid... [more]
ARGD_ANASP1.223e-1239.19Acetylornithine aminotransferase OS=Anabaena sp. (... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP13YH16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260748 ID=DY260748; Name=DY260748; organism=Citrus clementina; type=EST; length=981bp
TCGGTAATTTTCCTCCTAATTTCTTTTCTTCTCACGCTTTTTCCAGGGAA
ACAAACAGCCTCGCATAACCATGCATAACGCAATGAGCTCAACGTTTCAA
GCACCACTCCAAGTTCCACTCTCACAAGCGGGCAATCACCGCCGCCAGAT
CAGATTCAACGGCGTAAAACGGCGACCGATGGTGGCGGCGGCAAGTGTGA
ACGTGGAAGTGAACGATGCAGCGCGTGGGAGCGCGGGGGGGTTGGGGAGG
AACAACAAGGAGGTGATGGAGGCGGAGAAGAAGTTACTCGTGGGGACGTA
CAATAGGGCACCAGTTGTGCTGGCAGAGTGGTAAAGGATGTGAATTGTAC
GATGCTGAAGGGCGAGAGTATTTGGATTTGAGCTCGGGGATTGCTGTGAA
TGCGCATGGACATGGAGATGCTGATTGGATCGAGGCTGATGTTGATCAAG
CTAATGTGTTGACTCATGTGAACAATATGTATTATTCCGTTCATAACATA
GAGCTTGCTGAGCGTTTGGTGGCTTGTTCTTATGCCTGATCGTGTGTTTT
TCGTCCAAACTGGATCGGAAGCAAATGACGCTGCTATTTGTTTTGCCCGA
ACGTTCCATAGACACACTTGTCCTGAATCCGAAAAGCCAGCCACAAAAGT
TCGTATCGTTTCACCATAGTTTACATGGAAGGACTAAGGCTGCTCATGAA
CCTGAGAGCTAAAGAATGCCTACTTCCTTTGTTTGAACAATTTTTGGGAC
AGGAATACCATATACCACAGTTTGGAAAACCTGAAAACCAACCATATTAA
ATAATTGAACCTCAAAGTGACCAGCAAGGGAATGAAATACGAGCCAATCT
TCAGAATACTTTGTCATAAAAAATTACCTCCAAATGAACACAACAAGTGG
AACAACGGAGGACAAAAAACCTTCAAGAACGAATTCCCAACAAGCTCAGT
TAGTAACAATACAAATTTTTAACAGCACCTC
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