DY261737

Overview
NameDY261737
Unique NameDY261737
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1304
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY261737 vs. ExPASy Swiss-Prot
Match: CYSP_PEA (Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 2.505e-51
Identity = 102/145 (70.34%), Postives = 118/145 (81.38%), Query Frame = 2
Query:  125 DDAMIRQVVPSDGEQSEDHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACTSRRSFNATTAFQ 559
            DD +IRQVV ++    EDHLLNAEHHF+ FKSKFSK+YAT+EEHDYRF VFK+NL +AK  Q  DPTA HG+TKFSDLT SEFRRQFLGL +RLRLPA AQKAPILPT +LP DFDWR+ GAVT VKDQG+C S  +F+ T A +
Sbjct:   26 DDFIIRQVVDNE----EDHLLNAEHHFTSFKSKFSKSYATKEEHDYRFGVFKSNLIKAKLHQNRDPTAEHGITKFSDLTASEFRRQFLGLKKRLRLPAHAQKAPILPTTNLPEDFDWREKGAVTPVKDQGSCGSCWAFSTTGALE 166          
BLAST of DY261737 vs. ExPASy Swiss-Prot
Match: RD19A_ARATH (Cysteine proteinase RD19a OS=Arabidopsis thaliana GN=RD19A PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.089e-46
Identity = 94/146 (64.38%), Postives = 111/146 (76.03%), Query Frame = 2
Query:  122 GDDAMIRQVVPSDGEQSEDHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACTSRRSFNATTAFQ 559
            GDD +IRQVV      +E  +L +E HFSLFK KF K YA+ EEHDYRF VFKANLRRA+R Q LDP+A HGVT+FSDLT SEFR++ LG+    +LP DA KAPILPT +LP DFDWRDHGAVT VK+QG+C S  SF+AT A +
Sbjct:   28 GDDLVIRQVVGG----AEPQVLTSEDHFSLFKRKFGKVYASNEEHDYRFSVFKANLRRARRHQKLDPSATHGVTQFSDLTRSEFRKKHLGVRSGFKLPKDANKAPILPTENLPEDFDWRDHGAVTPVKNQGSCGSCWSFSATGALE 169          
BLAST of DY261737 vs. ExPASy Swiss-Prot
Match: A494_ARATH (Probable cysteine proteinase A494 OS=Arabidopsis thaliana GN=At2g21430 PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 1.523e-40
Identity = 84/145 (57.93%), Postives = 107/145 (73.79%), Query Frame = 2
Query:  125 DDAMIRQVVPSDGEQSEDHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACTSRRSFNATTAFQ 559
            +D +IRQVV    +++E  +L++E HF+LFK KF K Y + EEH YRF VFKANL RA R Q +DP+A HGVT+FSDLT SEFRR+ LG+    +LP DA +APILPT +LP +FDWRD GAVT VK+QG+C S  SF+ T A +
Sbjct:   26 EDVLIRQVV----DETEPKVLSSEDHFTLFKKKFGKVYGSIEEHYYRFSVFKANLLRAMRHQKMDPSARHGVTQFSDLTRSEFRRKHLGVKGGFKLPKDANQAPILPTQNLPEEFDWRDRGAVTPVKNQGSCGSCWSFSTTGALE 166          
BLAST of DY261737 vs. ExPASy Swiss-Prot
Match: CYSP1_MAIZE (Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.200e-39
Identity = 86/150 (57.33%), Postives = 104/150 (69.33%), Query Frame = 2
Query:  125 DDAMIRQVVPSDGEQSEDHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLR-----LPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACTSRRSFNATTAFQ 559
            +D +IRQVVP  G    D  LNAE HF  F  +F K+Y   +EH YR  VFK NLRRA+R QLLDP+A HGVTKFSDLTP+EFRR +LGL +  R     L   A +AP+LPT+ LP DFDWRDHGAV  VK+QG+C S  SF+A+ A +
Sbjct:   24 EDPLIRQVVP--GGDDNDLELNAESHFLSFVQRFGKSYKDADEHAYRLSVFKDNLRRARRHQLLDPSAEHGVTKFSDLTPAEFRRTYLGLRKSRRALLRELGESAHEAPVLPTDGLPDDFDWRDHGAVGPVKNQGSCGSCWSFSASGALE 171          
BLAST of DY261737 vs. ExPASy Swiss-Prot
Match: CATF_MOUSE (Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 9.943e-16
Identity = 50/117 (42.74%), Postives = 72/117 (61.54%), Query Frame = 2
Query:  203 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDP-TAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDL-PTDFDWRDHGAVTGVKDQGACTSRRSFNAT 547
            F  F + +++TY ++EE  +R  VF  N+ RA++ Q LD  TA +G+TKFSDLT  EF   +L  N  L+  +  + +P    NDL P ++DWR  GAVT VK+QG C S  +F+ T
Sbjct:  165 FKDFMTTYNRTYESREEAQWRLTVFARNMIRAQKIQALDRGTAQYGITKFSDLTEEEFHTIYL--NPLLQKESGRKMSPAKSINDLAPPEWDWRKKGAVTEVKNQGMCGSCWAFSVT 279          
BLAST of DY261737 vs. ExPASy Swiss-Prot
Match: CATF_HUMAN (Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 6.445e-15
Identity = 54/128 (42.19%), Postives = 72/128 (56.25%), Query Frame = 2
Query:  170 SEDHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDP-TAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDL-PTDFDWRDHGAVTGVKDQGACTSRRSFNAT 547
            S+D  +     F  F   +++TY ++EE  +R  VF  N+ RA++ Q LD  TA +GVTKFSDLT  EFR  +L  N  LR     +        DL P ++DWR  GAVT VKDQG C S  +F+ T
Sbjct:  176 SQDLPVKMASIFKNFVITYNRTYESKEEARWRLSVFVNNMVRAQKIQALDRGTAQYGVTKFSDLTEEEFRTIYL--NTLLRKEPGNKMKQAKSVGDLAPPEWDWRSKGAVTKVKDQGMCGSCWAFSVT 301          
BLAST of DY261737 vs. ExPASy Swiss-Prot
Match: CYSP_TRYBB (Cysteine proteinase OS=Trypanosoma brucei brucei PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.436e-14
Identity = 48/123 (39.02%), Postives = 64/123 (52.03%), Query Frame = 2
Query:  194 EHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQ-------FLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACTSRRSFN 541
            E  F+ FK K+ K Y   +E  +RFR F+ N+ +AK +   +P A  GVT FSD+T  EFR +       F    +RLR      K   + T   P   DWR+ GAVT VK QG C S  +F+
Sbjct:   38 EMRFAAFKKKYGKVYKDAKEEAFRFRAFEENMEQAKIQAAANPYATFGVTPFSDMTREEFRARYRNGASYFAAAQKRLR------KTVNVTTGRAPAAVDWREKGAVTPVKVQGQCGSCWAFS 154          
BLAST of DY261737 vs. ExPASy Swiss-Prot
Match: CATV_NPVAH (Viral cathepsin OS=Adoxophyes honmai nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.456e-14
Identity = 47/147 (31.97%), Postives = 77/147 (52.38%), Query Frame = 2
Query:  134 MIRQVVPSDGEQSEDHLL----NAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQK------------APILPTNDLPTDFDWRDHGAVTGVKDQGACTS 526
            MI  ++     Q E HL     +A+H+F  F   ++K Y   +  +YRF++FK NL     +  L+ +A++ + KFSDL+ +E   ++ GL    + P++  +            AP    ++LP +FDWR +  +T VKDQGAC S
Sbjct:    5 MIFTILLVASSQIEGHLKFDIHDAQHYFETFIINYNKQYPDTKTKNYRFKIFKQNLEDINEKNKLNDSAIYNINKFSDLSKNELLTKYTGLTS--KKPSNMVRSTSNFCNVIHLDAPPDVHDELPQNFDWRVNNKMTSVKDQGACGS 149          
BLAST of DY261737 vs. ExPASy Swiss-Prot
Match: CATL_SCHMA (Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.587e-13
Identity = 46/124 (37.10%), Postives = 72/124 (58.06%), Query Frame = 2
Query:  188 NAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQL-LDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPIL---PTNDLPTDFDWRDHGAVTGVKDQGACTSRRSFNAT 547
            N +  +  FK K+ K Y   E+ + RF +FK+N+ +A+  Q+ +  +A++GVT +SDLT  EF R  L  +    +P+     P       N++P +FDWR+ GAVT VK+QG C S  +F+ T
Sbjct:   15 NVDEKYVQFKLKYRKQYHETED-EIRFNIFKSNILKAQLYQVFVRGSAIYGVTPYSDLTTDEFARTHLTAS--WVVPSSRSNTPTSLGKEVNNIPKNFDWREKGAVTEVKNQGMCGSCWAFSTT 135          
BLAST of DY261737 vs. ExPASy Swiss-Prot
Match: CPR1_DROME (Putative cysteine proteinase CG12163 OS=Drosophila melanogaster GN=CG12163 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 4.619e-13
Identity = 42/121 (34.71%), Postives = 70/121 (57.85%), Query Frame = 2
Query:  194 EHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDP-TAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPT--NDLPTDFDWRDHGAVTGVKDQGACTSRRSFNAT 547
            +H F  F+ +F + Y +  E   R R+F+ NL+  +     +  +A +G+T+F+D+T SE++ +  GL +R    A    A ++P    +LP +FDWR   AVT VK+QG+C S  +F+ T
Sbjct:  305 DHLFYKFQVRFGRRYVSTAERQMRLRIFRQNLKTIEELNANEMGSAKYGITEFADMTSSEYKER-TGLWQRDEAKATGGSAAVVPAYHGELPKEFDWRQKDAVTQVKNQGSCGSCWAFSVT 424          
The following BLAST results are available for this feature:
BLAST of DY261737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
CYSP_PEA2.505e-5170.34Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1[more]
RD19A_ARATH1.089e-4664.38Cysteine proteinase RD19a OS=Arabidopsis thaliana ... [more]
A494_ARATH1.523e-4057.93Probable cysteine proteinase A494 OS=Arabidopsis t... [more]
CYSP1_MAIZE2.200e-3957.33Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=... [more]
CATF_MOUSE9.943e-1642.74Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1[more]
CATF_HUMAN6.445e-1542.19Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1[more]
CYSP_TRYBB1.436e-1439.02Cysteine proteinase OS=Trypanosoma brucei brucei P... [more]
CATV_NPVAH5.456e-1431.97Viral cathepsin OS=Adoxophyes honmai nucleopolyhed... [more]
CATL_SCHMA1.587e-1337.10Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=... [more]
CPR1_DROME4.619e-1334.71Putative cysteine proteinase CG12163 OS=Drosophila... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP3YN24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY261737 ID=DY261737; Name=DY261737; organism=Citrus clementina; type=EST; length=1304bp
CTTATCTGCTTCTTTCTTCTTCGCAGTCCACTGAAACAAATCAAAAATGG
ACCGCCGTATTCTCTCCTCTCTCCTCCTCCTCCTCCTATCTGCTGTGCTT
GCGTCCGCCGTAGCTGTCAGCGGCGACGATGCTATGATCAGACAGGTCGT
GCCATCAGACGGCGAACAATCCGAAGATCATCTCCTGAACGCGGAGCACC
ACTTCTCCCTCTTCAAGTCCAAATTCTCCAAGACTTACGCCACTCAGGAG
GAGCACGATTACCGATTCCGCGTGTTCAAGGCTAACCTCCGCCGAGCAAA
GCGACGCCAGCTCCTGGACCCCACTGCTGTCCACGGTGTCACCAAGTTCT
CCGACTTAACGCCGTCTGAATTCCGCCGTCAGTTCCTTGGCTTGAATAGG
CGGCTTCGGCTACCAGCTGACGCTCAAAAGGCTCCTATCCTCCCTACCAA
CGATCTTCCTACTGACTTTGACTGGCGTGATCACGGCGCCGTTACCGGCG
TCAAAGACCAAGGCGCATGTACATCGCGCCGGTCGTTTAATGCAACCACC
GCTTTCCAGGCCAGCCCAACACCTAATACAACAAGACCTCGCCCCACTTC
CCACACCACCATCCTGCGCCACTACCCCAACACAAATACACATCATGACT
AATCTTCATATCCCGCCCCCATCACATATGCTCCCTCACAACCTCCAATC
CGTCAATACTATCCCCCTCTCCCAACGACATATACATACGACTATGCCCT
AACCAATACTTATAAGCAATTACATCACCCAACACAACTACATGTTCAAC
CAACCGACTTCTCCTCATCCACACACTGCACCCCTCATCCCCTCTCCCTA
CCCTTCTCCTACCACCTAAACTTTAAGCAGAACTCAACGCCAGACTGACC
AAAAAACACTCAAACATAACTCCAAACACTACTCCCTCACACTCTCTCAT
CCCAACCCCCTATATCACACTTACCTTCCCACCTCCTTCCAATGCTAGAT
TACGACCCCCCTCCTCATCACACCCTACTCTACCTTTCACATCCATCTTC
CGCAAAACACCACTCTCGCACCTAGACCACACACCTTTCTCTCCCTAGGT
CATACACACCTTACTTCATCAAACACGAAAAACCATCCATCGCACTGAAC
AACACGATATAATTACGCACATATCACACTAATATCTCTTCACTTTCACC
CCTCCCCACCCCCAATTTTATCTACTCACTTCTGTCAAATTTACGCTCTT
TATATAGCTCTAAAAGTTCTACCTAGCCATCCTCGTATACTATATGCCTA
CCTA
back to top