DY262499

Overview
NameDY262499
Unique NameDY262499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1240
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262499_ssr386 microsatellite DY262499_ssr386:386..409. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY262499 vs. ExPASy Swiss-Prot
Match: WIPI3_XENTR (WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus tropicalis GN=wdr45l PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 6.849e-27
Identity = 65/156 (41.67%), Postives = 87/156 (55.77%), Query Frame = 1
Query:  568 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRERIVVVLEHRY-MFIVXXXXXXXXXXXXXXXXXXXXXXXHNPSTSVLACPGPQRGTVSI 1032
            L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G   +YPP KV+IWDD + + + E  F ++V++VKL R+RIVVVL+    +F                          N + S+LA PG   G V I
Sbjct:   13 LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGYVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGAHTGHVQI 168          
BLAST of DY262499 vs. ExPASy Swiss-Prot
Match: WIPI3_CHICK (WD repeat domain phosphoinositide-interacting protein 3 OS=Gallus gallus GN=WDR45L PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 6.849e-27
Identity = 65/156 (41.67%), Postives = 87/156 (55.77%), Query Frame = 1
Query:  568 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRERIVVVLEHRY-MFIVXXXXXXXXXXXXXXXXXXXXXXXHNPSTSVLACPGPQRGTVSI 1032
            L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G   +YPP KV+IWDD + + + E  F ++V++VKL R+RIVVVL+    +F                          N + S+LA PG   G V I
Sbjct:   13 LLYAGFNQDHGCFACGMENGFRVYNADPLKEKEKQEFPEGGVGHVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQI 168          
BLAST of DY262499 vs. ExPASy Swiss-Prot
Match: WIPI3_XENLA (WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus laevis GN=wdr45l PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 8.945e-27
Identity = 65/156 (41.67%), Postives = 87/156 (55.77%), Query Frame = 1
Query:  568 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRERIVVVLEHRY-MFIVXXXXXXXXXXXXXXXXXXXXXXXHNPSTSVLACPGPQRGTVSI 1032
            L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G   +YPP KV+IWDD + + + E  F ++V++VKL R+RIVVVL+    +F                          N + S+LA PG   G V I
Sbjct:   13 LLYSGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVSYVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGAHTGHVQI 168          
BLAST of DY262499 vs. ExPASy Swiss-Prot
Match: WIPI3_PONAB (WD repeat domain phosphoinositide-interacting protein 3 OS=Pongo abelii GN=WDR45L PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.993e-26
Identity = 64/156 (41.03%), Postives = 87/156 (55.77%), Query Frame = 1
Query:  568 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRERIVVVLEHRY-MFIVXXXXXXXXXXXXXXXXXXXXXXXHNPSTSVLACPGPQRGTVSI 1032
            L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G   +YPP KV+IWDD + + + E  F ++V++VKL R+RIVVVL+    +F                          N + S+LA PG   G V +
Sbjct:   13 LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQL 168          
BLAST of DY262499 vs. ExPASy Swiss-Prot
Match: WIPI3_MOUSE (WD repeat domain phosphoinositide-interacting protein 3 OS=Mus musculus GN=Wdr45l PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.993e-26
Identity = 64/156 (41.03%), Postives = 87/156 (55.77%), Query Frame = 1
Query:  568 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRERIVVVLEHRY-MFIVXXXXXXXXXXXXXXXXXXXXXXXHNPSTSVLACPGPQRGTVSI 1032
            L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G   +YPP KV+IWDD + + + E  F ++V++VKL R+RIVVVL+    +F                          N + S+LA PG   G V +
Sbjct:   13 LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQL 168          
BLAST of DY262499 vs. ExPASy Swiss-Prot
Match: WIPI3_HUMAN (WD repeat domain phosphoinositide-interacting protein 3 OS=Homo sapiens GN=WDR45L PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.993e-26
Identity = 64/156 (41.03%), Postives = 87/156 (55.77%), Query Frame = 1
Query:  568 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRERIVVVLEHRY-MFIVXXXXXXXXXXXXXXXXXXXXXXXHNPSTSVLACPGPQRGTVSI 1032
            L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G   +YPP KV+IWDD + + + E  F ++V++VKL R+RIVVVL+    +F                          N + S+LA PG   G V +
Sbjct:   13 LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQL 168          
BLAST of DY262499 vs. ExPASy Swiss-Prot
Match: WIPI3_DANRE (WD repeat domain phosphoinositide-interacting protein 3 OS=Danio rerio GN=wdr45l PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 5.798e-26
Identity = 55/105 (52.38%), Postives = 73/105 (69.52%), Query Frame = 1
Query:  568 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRERIVVVLE 882
            L+   +NQD+GCFA G   GFR+YN +P KE  + +   GG   VEMLFRCN LALVG G   +YPP KV+IWDD + + + E  F ++V++VKL R+RIVVVL+
Sbjct:   13 LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKHEFLEGGVGHVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLD 117          
BLAST of DY262499 vs. ExPASy Swiss-Prot
Match: ATG18_YARLI (Autophagy-related protein 18 OS=Yarrowia lipolytica GN=ATG18 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.536e-19
Identity = 44/102 (43.14%), Postives = 66/102 (64.71%), Query Frame = 1
Query:  577 VSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRERIVVVLE 882
            VS+NQDY C + GT  G++IYNC+PF + F +    GG  IVEMLF  +++A+VG GD  Q  P ++ I +  +   I E  F + V  V+L+R+R+VV+L+
Sbjct:    8 VSFNQDYSCVSVGTPQGYKIYNCDPFGKCFSK--ADGGMGIVEMLFCTSLIAVVGMGDQPQNSPRRLKIVNTKRQSTICELTFPTAVLGVRLNRQRLVVLLQ 107          

HSP 2 Score: 28.8758 bits (63), Expect = 2.536e-19
Identity = 14/29 (48.28%), Postives = 19/29 (65.52%), Query Frame = 3
Query:  888 IYVYSFVNLKLLHQIETLANLKGALLSFS 974
            IY+Y   N+KL+H IET  N  GA+ + S
Sbjct:  110 IYIYDISNMKLVHTIETSPN-PGAVCALS 137          
BLAST of DY262499 vs. ExPASy Swiss-Prot
Match: ATG18_PICAN (Autophagy-related protein 18 OS=Pichia angusta GN=ATG18 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.061e-18
Identity = 41/101 (40.59%), Postives = 63/101 (62.38%), Query Frame = 1
Query:  580 SWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRERIVVVLE 882
            ++NQD+ C + G S G++IYNCEPF + + +    G   IVEMLF  ++LA+VG G+     P ++ I +  +   I E  F   + +VKL+RER+VV+LE
Sbjct:   38 NFNQDFSCVSVGYSNGYKIYNCEPFGQCYSKS--DGSIGIVEMLFSSSLLAIVGMGEQHSLSPRRLKIINTKRQTTICELTFPGAILAVKLNRERLVVLLE 136          

HSP 2 Score: 30.4166 bits (67), Expect = 2.061e-18
Identity = 18/41 (43.90%), Postives = 23/41 (56.10%), Query Frame = 3
Query:  888 IYVYSFVNLKLLHQIETLANLKG--ALLSFS*SEYLRVGLP 1004
            IY+Y   N++LLH IET +N  G  AL   S + YL    P
Sbjct:  139 IYIYDINNMRLLHTIETPSNPNGLIALSPSSENNYLAYPSP 179          
BLAST of DY262499 vs. ExPASy Swiss-Prot
Match: ATG18_YEAST (Autophagy-related protein 18 OS=Saccharomyces cerevisiae GN=ATG18 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.683e-18
Identity = 43/104 (41.35%), Postives = 67/104 (64.42%), Query Frame = 1
Query:  577 VSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRERIVVVLEHR 888
            +++NQ   C + GTS GF+I+NCEPF + +  D  SGG+ IVEMLF  ++LALVG GD     P ++ I +  +   I E  F + + SVK+++ R+VV+L+ +
Sbjct:   11 INFNQTGTCISLGTSKGFKIFNCEPFGKFYSED--SGGYAIVEMLFSTSLLALVGIGDQPALSPRRLRIINTKKHSIICEVTFPTSILSVKMNKSRLVVLLQEQ 112          

HSP 2 Score: 27.335 bits (59), Expect = 2.683e-18
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 3
Query:  888 IYVYSFVNLKLLHQIETLANLKGAL 962
            IY+Y    ++LLH IET  N +G +
Sbjct:  113 IYIYDINTMRLLHTIETNPNPRGLM 137          
The following BLAST results are available for this feature:
BLAST of DY262499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
WIPI3_XENTR6.849e-2741.67WD repeat domain phosphoinositide-interacting prot... [more]
WIPI3_CHICK6.849e-2741.67WD repeat domain phosphoinositide-interacting prot... [more]
WIPI3_XENLA8.945e-2741.67WD repeat domain phosphoinositide-interacting prot... [more]
WIPI3_PONAB1.993e-2641.03WD repeat domain phosphoinositide-interacting prot... [more]
WIPI3_MOUSE1.993e-2641.03WD repeat domain phosphoinositide-interacting prot... [more]
WIPI3_HUMAN1.993e-2641.03WD repeat domain phosphoinositide-interacting prot... [more]
WIPI3_DANRE5.798e-2652.38WD repeat domain phosphoinositide-interacting prot... [more]
ATG18_YARLI2.536e-1943.14Autophagy-related protein 18 OS=Yarrowia lipolytic... [more]
ATG18_PICAN2.061e-1840.59Autophagy-related protein 18 OS=Pichia angusta GN=... [more]
ATG18_YEAST2.683e-1841.35Autophagy-related protein 18 OS=Saccharomyces cere... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AF01RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262499 ID=DY262499; Name=DY262499; organism=Citrus clementina; type=EST; length=1240bp
CTCTCACAAAGCGAAAGAGAAAATTTGATCTGATGATCATTAATTTGATT
TCTCATATCACAGCATCAAGGTTAGTGTCTCTATTCGATTTCTGCTTTCT
GTACTCTTCGATTAAATCACTTTATTTGTTTGGAATTATATAATATAGTA
AGGAATCAGGAGGCCCGACTGATATTTTCACGATCGCAAATTTCCCGTTT
CTGATCATTGATCACTGGCTGCTGCCTGCTGGTGATTAGATGCATTAACT
CTACATGCTATGAGAGATACAGAAGTTTGCAGAATCTGTGGGAATTAGCG
TATTTGTATGACATTTCATAATATTGTGTGAATACAGGGGGTGCCACTGA
AATTATTCACAATCGAGAAGATTTTCATATTTGATTGCTGCTGCTGCTGC
TGCTGCTGCTGACCCTTTCTTCGTCCCACATGACTTCAACTGTTTCGACA
TCTCGAGAAATTCTTCCACCGGGCCCCTTTGGATCCCCCAATGCTGGGGC
TTCGGCTTCGGCTTTGGCTTCATTTGGCCACCCGCAAACGGGGTTCAGTG
ATGTTGACGAAATTGAGTTGATCTCTGTGTCTTGGAACCAGGACTATGGT
TGTTTTGCCGCTGGAACTAGTTGTGGGTTTCGAATTTATAATTGTGAGCC
GTTTAAGGAAACTTTTAGACGTGATTTGAAAAGTGGTGGGTTTAGGATTG
TTGAGATGTTGTTTCGTTGTAATATATTGGCACTCGTTGGTGCTGGGGAT
AATTCTCAGTATCCTCCTACTAAAGTTATTATTTGGGATGATCATCAGAG
CAGGTGCATTGGTGAGTTTGCGTTTAGGTCTGATGTTCGCTCTGTGAAAT
TGAGTAGGGAACGAATTGTGGTTGTTCTTGAGCATAGATATATGTTTATA
GTTTTGTTAATCTCAAGTTGCTTCATCAGATTGAGACTCTCGCGAATCTG
AAGGGGGCTTTGTTGTCTTTCTCATAATCCGAGTACCTCCGTGTTGGCTT
GCCCGGGTCCTCAACGGGGAACGGTTTCCATTTGACAATTTGGGGCTCAA
TATGAAAAAGCTAAAAAATGGCCCAGGATTTTCCAATGGGGTGCCTTTAC
CCTCAAATTGGAAGGGGCGGCTTTTTTGCCACCTGGCAAAAACCCAGGGG
GCCATTTTGTAAAAAAAAATTTTTAAACACCGGGGGGGAGGGGGACTCCC
CTTTGGCCAGAAAAGGTTCCAAAAAAAAGGGTGTGTAACA
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