DY262515

Overview
NameDY262515
Unique NameDY262515
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1311
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262515_ssr97 microsatellite DY262515_ssr97:97..111. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of DY262515 vs. ExPASy Swiss-Prot
Match: CHLM_SYNY3 (Magnesium-protoporphyrin O-methyltransferase OS=Synechocystis sp. (strain PCC 6803) GN=chlM PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 6.865e-49
Identity = 109/237 (45.99%), Postives = 143/237 (60.34%), Query Frame = 2 
Query:  386 DKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKVKRLVVCCIIGTWKM*LF*KLKTFDILSLFVKFMQAEEELLADNGGEAPVMPKFEVKDLESLDGEYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLIL*LAPKTFIMILLKRVGKLFPGPSKAPRANLTPKPECEKAL 1096
            DK +VR+YFN++GF RW++IYG+   VN VQ DIR+GH +TV++ +  L  +G+L G+ VCDAGCG GSL+IPLA+ GA+V  SDIS  MV EA++K                                   A+E L   N       P F  +DL  L G+YDTV+CLDVLIHYP  +A  MI+HLASLA++RLIL  APKT  + +LK++G LFPGPSK  RA    + +  K L
Sbjct:    8 DKTIVRDYFNSTGFDRWRRIYGD-GQVNFVQKDIRVGHQQTVDSVVAWLVADGNLPGLLVCDAGCGVGSLSIPLAQAGALVYGSDISEKMVGEAQQK-----------------------------------AQEVLAYGN------QPTFMTQDLAQLGGKYDTVICLDVLIHYPTEEASAMISHLASLADRRLILSFAPKTLGLTVLKKIGGLFPGPSKTTRAYQHKEADIRKIL 202
The following BLAST results are available for this feature:
BLAST of DY262515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CHLM_SYNY36.865e-4945.99Magnesium-protoporphyrin O-methyltransferase OS=Sy... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA100AG07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262515 ID=DY262515; Name=DY262515; organism=Citrus clementina; type=EST; length=1311bp
CTCCCCACTCGCCACGTCACCACGTAACGACCTTACCCTTTTCCCCTTCC
CCTCTCCCTCACCGGCGGGAAACACAAAATATCACTGAAACTTAAAAAAA
TAAAATAAAATGGCATTCACAGCTTCACTGTCTTCCCACATTCCATTCTA
CAACAACTCCTCTACACTCTCGCCGAACCGCGGCAAAACAAGTAAAACGA
CGCCGCTTCTGTGCAAACCAGTAGCTGCAATTCCCCCACTCTCGACCGCC
ACCACCAACTCCGTCCCCGACCTATCCACCATCGCCGTCATCAGCGGCGG
CTCAATCGCAGCACTCGCCGCCGTCCTCTCCCTCGTCGACCCCGAGCGCC
GGCGCCAGCTCCAGGCCGAGGAAGTCGGAGGCGGAGACAAAGAGGTCGTG
AGAGAGTACTTCAACAACTCGGGGTTCCAGCGTTGGAAGAAGATTTACGG
CGAGACCGATGACGTTAACAGAGTTCAGCTTGACATTCGGTTAGGTCACT
CGAAGACCGTTGAGAATACGATGCAGATGTTGAATGACGAAGGCTCGCTG
AAAGGAATTGCGGTTTGTGACGCAGGGTGTGGGACCGGCAGTCTGGCGAT
TCCGTTGGCGAAACAAGGGGCGATTGTCTCGGCCAGCGATATTTCGGCCG
CAATGGTTGCTGAAGCTAGGAAGAAGGTAAAACGACTCGTCGTATGTTGC
ATTATTGGAACTTGGAAAATGTGATTGTTCTAAAAATTAAAAACATTTGA
TATTTTATCCTTATTTGTTAAATTTATGCAGGCAGAAGAGGAGCTGTTAG
CAGACAATGGAGGGGAAGCACCAGTGATGCCGAAATTTGAAGTGAAGGAT
CTAGAGAGTTTAGATGGGGAGTACGACACAGTAGTCTGCTTAGATGTTTT
GATACATTACCCACAAAGTAAGGCAGATGGGATGATTGCTCACCTTGCTT
CATTGGCTGAAAAGCGACTTATTCTTTAACTTGCGCCAAAAACTTTTATT
ATGATTTTGTTAAAAAGGGTGGGCAAATTGTTTCCTGGGCCTTCAAAGGC
ACCGAGGGCTAATCTCACGCCCAAGCCTGAATGTGAAAAGGCCCTTCAAA
AGGGTTGGGTGGAAAAAAAAAAAAAAAAAGCTAATCCCCCACTCAATTTT
ACTTTTTCAAAAAATTTTTAAAGGCTTCCCCTGCCAAAAAAAAAAGGGAA
GGGGGAAAGTTAAAAATTTTAAAATTTTTAAAATTTATGTGCCCCTTTTT
ATTTTTTTTTTCTATAAAAAAAATTTAGTAAGAAAAAAAAAGAAATCTCC
CCGTGGCGTCC
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