DY262521

Overview
NameDY262521
Unique NameDY262521
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1243
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262521_ssr366 microsatellite DY262521_ssr366:366..380. BLAST: Citrus ESTs to Prunus persica proteins V1
DY262521_ssr510 microsatellite DY262521_ssr510:510..533. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY262521 vs. ExPASy Swiss-Prot
Match: WRK48_ARATH (Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 6.166e-44
Identity = 86/120 (71.67%), Postives = 98/120 (81.67%), Query Frame = 3
Query:  630 REPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGSIGIMAN---DHNSTATFGASSSFVIRQPSYPSLHHQQP 980
            RE RFAF+TKSDID+LDDGYRWRKYGQKAVKNSP+PRSYYRCT+ GCGVKKRVERSS+DP+IV+TTYEGQH HP P+TPRG IG++ +   DH   AT  +SSSF I QP Y    H QP
Sbjct:  205 REARFAFLTKSDIDNLDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERSSDDPSIVMTTYEGQHTHPFPMTPRGHIGMLTSPILDHG--ATTASSSSFSIPQPRYLLTQHHQP 322          
BLAST of DY262521 vs. ExPASy Swiss-Prot
Match: WRK57_ARATH (Probable WRKY transcription factor 57 OS=Arabidopsis thaliana GN=WRKY57 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 5.784e-34
Identity = 72/120 (60.00%), Postives = 87/120 (72.50%), Query Frame = 3
Query:  630 REPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGSIGIMANDHNSTATFGASSSFVIRQPSYPSLHHQQPTLH 989
            R+PRFAFMTKSD+D+L+DGYRWRKYGQKAVKNSP PRSYYRCT++ C VKKRVERSS+DP+IV+TTYEGQH H +   PRG I    + H+ T       S     P  P+ ++ Q  LH
Sbjct:  131 RQPRFAFMTKSDVDNLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSRCTVKKRVERSSDDPSIVITTYEGQHCHQTIGFPRGGILTAHDPHSFT-------SHHHLPPPLPNPYYYQELLH 243          
BLAST of DY262521 vs. ExPASy Swiss-Prot
Match: WRK23_ARATH (Probable WRKY transcription factor 23 OS=Arabidopsis thaliana GN=WRKY23 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.289e-33
Identity = 76/127 (59.84%), Postives = 86/127 (67.72%), Query Frame = 3
Query:  630 REPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPR--------GSIGIMANDHNSTATFGASSSFVIRQPSYPSL---HHQQ 977
            RE R AFMTKS++DHL+DGYRWRKYGQKAVKNSP PRSYYRCT+A C VKKRVERS  DP+ VVTTYEGQH H SP+T R        GS G  ++  N    F    S +I  P +  L   HHQQ
Sbjct:  158 REARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVKKRVERSFRDPSTVVTTYEGQHTHISPLTSRPISTGGFFGSSGAASSLGNGCFGFPIDGSTLI-SPQFQQLVQYHHQQ 283          
BLAST of DY262521 vs. ExPASy Swiss-Prot
Match: WRK28_ARATH (Probable WRKY transcription factor 28 OS=Arabidopsis thaliana GN=WRKY28 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.683e-33
Identity = 63/82 (76.83%), Postives = 72/82 (87.80%), Query Frame = 3
Query:  630 REPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGS 875
            REPR +FMTKS++DHL+DGYRWRKYGQKAVKNSP+PRSYYRCT+  C VKKRVERS +DPT+V+TTYEGQH HP P   RGS
Sbjct:  156 REPRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPTVVITTYEGQHNHPIPTNLRGS 237          
BLAST of DY262521 vs. ExPASy Swiss-Prot
Match: WRKY8_ARATH (Probable WRKY transcription factor 8 OS=Arabidopsis thaliana GN=WRKY8 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.425e-32
Identity = 71/139 (51.08%), Postives = 90/139 (64.75%), Query Frame = 3
Query:  630 REPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGSI--GIMANDHNSTATFGASSSFVIRQPS-----------------YPSLHHQQPTLH 989
            +EPR +FMTK+++DHL+DGYRWRKYGQKAVKNSP+PRSYYRCT+  C VKKRVERS +DPT+V+TTYE QH HP P   R ++  G  A+D+N +++    S  +I  P                   PS H QQ   H
Sbjct:  167 KEPRVSFMTKTEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSYQDPTVVITTYESQHNHPIPTNRRTAMFSGTTASDYNPSSS-PIFSDLIINTPRSFSNDDLFRVPYASVNVNPSYHQQQHGFH 304          
BLAST of DY262521 vs. ExPASy Swiss-Prot
Match: WRK71_ARATH (Probable WRKY transcription factor 71 OS=Arabidopsis thaliana GN=WRKY71 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.425e-32
Identity = 63/83 (75.90%), Postives = 73/83 (87.95%), Query Frame = 3
Query:  630 REPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGSI 878
            RE R AFMTKS+IDHL+DGYRWRKYGQKAVKNSP+PRSYYRCT+  C VKKRVERS +DP+IV+TTYEG+H HP P T RG++
Sbjct:  120 REVRVAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPSIVITTYEGKHNHPIPSTLRGTV 202          
BLAST of DY262521 vs. ExPASy Swiss-Prot
Match: WRK12_ARATH (Probable WRKY transcription factor 12 OS=Arabidopsis thaliana GN=WRKY12 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 8.945e-27
Identity = 55/73 (75.34%), Postives = 60/73 (82.19%), Query Frame = 3
Query:  630 REPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIH 848
            REPRF F TKSD+D LDDGY+WRKYGQK VKNS HPRSYYRCT   C VKKRVER SED  +V+TTYEG+H H
Sbjct:  129 REPRFCFQTKSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNH 201          
BLAST of DY262521 vs. ExPASy Swiss-Prot
Match: WRK68_ARATH (Probable WRKY transcription factor 68 OS=Arabidopsis thaliana GN=WRKY68 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.168e-26
Identity = 56/108 (51.85%), Postives = 76/108 (70.37%), Query Frame = 3
Query:  636 PRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGSIGIMANDHNSTATFGASSSFVIRQPSYP 959
            P+ +F+T+S++ HLDDGY+WRKYGQK VK+SP PR+YYRCT+  C VKKRVERS  DP+ V+TTYEGQH HP P+       ++     S+ + G++S   I  P+ P
Sbjct:  104 PKVSFITRSEVLHLDDGYKWRKYGQKPVKDSPFPRNYYRCTTTWCDVKKRVERSFSDPSSVITTYEGQHTHPRPL-------LIMPKEGSSPSNGSASRAHIGLPTLP 204          
BLAST of DY262521 vs. ExPASy Swiss-Prot
Match: WRK13_ARATH (Probable WRKY transcription factor 13 OS=Arabidopsis thaliana GN=WRKY13 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.526e-26
Identity = 52/73 (71.23%), Postives = 61/73 (83.56%), Query Frame = 3
Query:  630 REPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIH 848
            REPRF F T S++D LDDGYRWRKYGQK VKN+ HPRSYYRCT   C VKKRVER ++DP +V+TTYEG+H+H
Sbjct:  207 REPRFCFKTLSEVDVLDDGYRWRKYGQKVVKNTQHPRSYYRCTQDKCRVKKRVERLADDPRMVITTYEGRHLH 279          
BLAST of DY262521 vs. ExPASy Swiss-Prot
Match: WRKY3_ARATH (Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 7.572e-26
Identity = 56/120 (46.67%), Postives = 74/120 (61.67%), Query Frame = 3
Query:  633 EPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPITPRGSIGIMANDHNSTATFGASSSFVIRQPSYPSLHHQQPTLHI 992
            EPR    T S++D LDDGYRWRKYGQK VK +P+PRSYY+CT+  CGV+K VER++ DP  VVTTYEG+H H  P     S  +  N+ ++T+T               + +HQQP   +
Sbjct:  400 EPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPDCGVRKHVERAATDPKAVVTTYEGKHNHDVPAARTSSHQLRPNNQHNTSTV--------------NFNHQQPVARL 505          

HSP 2 Score: 77.0258 bits (188), Expect = 2.527e-13
Identity = 36/60 (60.00%), Postives = 40/60 (66.67%), Query Frame = 3
Query:  678 DDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSP 857
            DDGY WRKYGQK VK S  PRSYY+CT   C VKK+VERS  D  +    Y+GQH H  P
Sbjct:  250 DDGYNWRKYGQKQVKGSDFPRSYYKCTHPACPVKKKVERSL-DGQVTEIIYKGQHNHELP 308          
The following BLAST results are available for this feature:
BLAST of DY262521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
WRK48_ARATH6.166e-4471.67Probable WRKY transcription factor 48 OS=Arabidops... [more]
WRK57_ARATH5.784e-3460.00Probable WRKY transcription factor 57 OS=Arabidops... [more]
WRK23_ARATH1.289e-3359.84Probable WRKY transcription factor 23 OS=Arabidops... [more]
WRK28_ARATH1.683e-3376.83Probable WRKY transcription factor 28 OS=Arabidops... [more]
WRKY8_ARATH1.425e-3251.08Probable WRKY transcription factor 8 OS=Arabidopsi... [more]
WRK71_ARATH1.425e-3275.90Probable WRKY transcription factor 71 OS=Arabidops... [more]
WRK12_ARATH8.945e-2775.34Probable WRKY transcription factor 12 OS=Arabidops... [more]
WRK68_ARATH1.168e-2651.85Probable WRKY transcription factor 68 OS=Arabidops... [more]
WRK13_ARATH1.526e-2671.23Probable WRKY transcription factor 13 OS=Arabidops... [more]
WRKY3_ARATH7.572e-2646.67Probable WRKY transcription factor 3 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AH01RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262521 ID=DY262521; Name=DY262521; organism=Citrus clementina; type=EST; length=1243bp
CTAAAGCAAGAAGACTGCAAGAGCGAAGCAAAGTAGGCCTCTTTTTACAT
AGAATTTGTTGTATTTTGATTTTACTATGTGGGTGTGATTGATTTTTAAT
GGAGAAACGAGAAGCTGAAACTTCAATCTCGATGGCGAATTCGACGCTAC
TTTCCGATGAGAATCCGGCGGGTGGGTATGGATTAGGAGGCATATTTGAC
ATGTCATGTGAGGGTGATAAGTGGGATGCAGCTTCTTTTGGTTTCATGGA
CTTGCTCAATGTCCAGAACCATAATACTAATTATAACAATCAAGATTTTG
GTGGTGATTCTTTTTTATTCAGTAATACTTTACATCCACCACCACCGGCG
GCAGCACCGATTCTCCCACCACCACCACCACAGCCGTCGCCGGCACCGGA
ATCCTCAGAGGTGTTGAACAACCCAGCTACTCCCAACTCATCCTCAATCT
CTTCATCATCAAACGAAGCAGCAGCTAATAATACCAATAATGAAGAGCAA
ACTGACACGAACAACAACAACAACAACAACAACAAAAACAGCAGCAGCAA
AGCTGGTGATGACGATGAACAAGAACAAGATAAGACTAAGAAACAGTTGA
AACCCAAAAAGAAGAATCAAAAGAAACAGAGAGAGCCAAGATTCGCGTTC
ATGACAAAGAGTGATATTGATCACTTAGATGATGGATACAGATGGCGAAA
GTACGGCCAAAAAGCTGTCAAAAATAGCCCCCATCCGAGAAGCTACTATC
GTTGCACTAGTGCCGGCTGCGGAGTGAAGAAGCGAGTGGAGAGATCATCT
GAAGACCCAACGATTGTTGTAACAACGTATGAAGGACAACACATACATCC
AAGCCCGATAACGCCTCGAGGGAGTATTGGAATCATGGCCAATGATCATA
ATTCGACTGCTACTTTTGGTGCTTCATCATCCTTTGTGATTCGGCAGCCC
TCATATCCTTCACTACATCACCAACAGCCAACCCTACATATATAGTTCAT
CGCCTCCGGTTGAATCAATTACCTTCTAATGGTACCAATAACTACCGCTA
ATTCTAAGTTTCAATAATCCCTACCTTTTCCCAGTTTTGGTTCCTCCATC
AACAAGCCAAAAAAGACGTTAAAAAGAATGAAAAAGTTCCCTTTCAGAGG
GCTTCCTTTTGTTTCTAAGAACCCCGCGCCCTGGGTTTCCGGGAGACATC
CGGGGCCCCTTCAACCAATTTGGCCAAAAAGGAAACCCCACAA
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