DY262528

Overview
NameDY262528
Unique NameDY262528
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length793
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262528 vs. ExPASy Swiss-Prot
Match: AGAL_COFAR (Alpha-galactosidase OS=Coffea arabica PE=1 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 7.039e-68
Identity = 131/206 (63.59%), Postives = 149/206 (72.33%), Query Frame = 3
Query:    3 KTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALLNSGRPIFFSLCEWGREDPATWAPKIGNSWRTTGDIKDNWNSMTSLADQNDKWASYAGPGGYNDPDMLEVGNGGMTTEGYRAHFTIWALA*APLLIGCNIQTLDKIT--LINSATRK*MH*PR*TWNSGEKSQKGRKS*GMGKAF*WE-----KKNQKLLWKKGSSKPTIPA 599
            KTFASWGVDYLKYDNC N   SPKERYPIMSKALLNSGR IFFSLCEWG EDPATWA ++GNSWRTTGDI D+W+SMTS AD NDKWASYAGPGG+NDPDMLEVGNGGMTT  YR+HF+IWALA APLLIGC+I+++D  T  L+++A            N  +   +G K    G    W      K+    LW +GSS  TI A
Sbjct:  132 KTFASWGVDYLKYDNCNNNNISPKERYPIMSKALLNSGRSIFFSLCEWGEEDPATWAKEVGNSWRTTGDIDDSWSSMTSRADMNDKWASYAGPGGWNDPDMLEVGNGGMTTTEYRSHFSIWALAKAPLLIGCDIRSMDGATFQLLSNAEVI-------AVNQDKLGVQGNKVKTYGDLEVWAGPLSGKRVAVALWNRGSSTATITA 330          
BLAST of DY262528 vs. ExPASy Swiss-Prot
Match: AGAL_CYATE (Alpha-galactosidase OS=Cyamopsis tetragonoloba PE=1 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 3.493e-67
Identity = 127/207 (61.35%), Postives = 149/207 (71.98%), Query Frame = 3
Query:    3 KTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALLNSGRPIFFSLCEWGREDPATWAPKIGNSWRTTGDIKDNWNSMTSLADQNDKWASYAGPGGYNDPDMLEVGNGGMTTEGYRAHFTIWALA*APLLIGCNIQTLDKIT--LINSATRK*MH*PR*TWNSGEKSQKGRKS*GMGKAF*W-----EKKNQKLLWKKGSSKPTIPAN 602
            KTFASWGVDYLKYDNC N G S KERYP M KALL+SGRPIFFS+CEWG EDP  WA  IGNSWRTTGDI+DNWNSMTS+AD NDKWASYAGPGG+NDPDMLEVGNGGMTTE YR+HF+IWALA APLL+GC+I+ +D  T  LI++A            N  +   +G+K         W     + K   +LW + SS+ T+ A+
Sbjct:  164 KTFASWGVDYLKYDNCENLGISVKERYPPMGKALLSSGRPIFFSMCEWGWEDPQIWAKSIGNSWRTTGDIEDNWNSMTSIADSNDKWASYAGPGGWNDPDMLEVGNGGMTTEEYRSHFSIWALAKAPLLVGCDIRAMDDTTHELISNAEVI-------AVNQDKLGVQGKKVKSTNDLEVWAGPLSDNKVAVILWNRSSSRATVTAS 363          
BLAST of DY262528 vs. ExPASy Swiss-Prot
Match: AGAL_ORYSJ (Alpha-galactosidase OS=Oryza sativa subsp. japonica GN=Os10g0493600 PE=1 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 3.936e-63
Identity = 99/141 (70.21%), Postives = 119/141 (84.40%), Query Frame = 3
Query:    3 KTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALLNSGRPIFFSLCEWGREDPATWAPKIGNSWRTTGDIKDNWNSMTSLADQNDKWASYAGPGGYNDPDMLEVGNGGMTTEGYRAHFTIWALA*APLLIGCNIQTLDKIT 425
            KTFASWGVDYLKYDNC + G S  ERY  MS A+   G+ IFFSLCEWG+E+PATWA ++GNSWRTTGDI DNW SMTS AD+ND+WA+YAGPGG+NDPDMLEVGNGGM+   YR+HF+IWALA APLLIGC+++++ + T
Sbjct:  172 KTFASWGVDYLKYDNCNDAGRSVMERYTRMSNAMKTYGKNIFFSLCEWGKENPATWAGRMGNSWRTTGDIADNWGSMTSRADENDQWAAYAGPGGWNDPDMLEVGNGGMSEAEYRSHFSIWALAKAPLLIGCDVRSMSQQT 312          

HSP 2 Score: 41.2022 bits (95), Expect = 3.936e-63
Identity = 16/27 (59.26%), Postives = 21/27 (77.78%), Query Frame = 1
Query:  457 INQDKLGIQGKKVKKEGNLEVWARPFN 537
            +NQD LG+QGKKV+ +  LEVWA P +
Sbjct:  324 VNQDSLGVQGKKVQSDNGLEVWAGPLS 350          
BLAST of DY262528 vs. ExPASy Swiss-Prot
Match: AGAL_DICDI (Probable alpha-galactosidase OS=Dictyostelium discoideum GN=melA PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.472e-43
Identity = 75/142 (52.82%), Postives = 105/142 (73.94%), Query Frame = 3
Query:    3 KTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALLNSGRPIFFSLCEWGREDPATWAPKIGNSWRTTGDIKDNWNSMTSLADQNDKWASYAGPGGYNDPDMLEVGNGGMTTEGYRAHFTIWALA*APLLIGCNIQTLDKITL 428
            +T+A WG+DY+K D C+ T  +P++RY IMS+AL  +GRP+FFSLC+WG E+P T+   +GNSWRTT DIKDNW+SM S         S++G GG+NDPDM+ VGNGGM+   Y +HF++W+L  APL+ GC++  +D+ TL
Sbjct:  134 QTYAEWGIDYVKEDWCYATLENPQQRYQIMSQALNATGRPMFFSLCDWGYENPWTFGMSVGNSWRTTPDIKDNWDSMLSNLMAQAPITSFSGIGGFNDPDMMMVGNGGMSNTEYVSHFSLWSLLNAPLIAGCDLIDIDQETL 275          

HSP 2 Score: 30.4166 bits (67), Expect = 1.472e-43
Identity = 14/29 (48.28%), Postives = 19/29 (65.52%), Query Frame = 1
Query:  457 INQDKLGIQGKKVK--KEGNLEVWARPFN 537
            INQD LG+QG  VK    G  ++WA+P +
Sbjct:  286 INQDPLGVQGSLVKSYNGGLQQIWAKPLS 314          
BLAST of DY262528 vs. ExPASy Swiss-Prot
Match: AGAL_SCHPO (Probable alpha-galactosidase OS=Schizosaccharomyces pombe GN=SPAC869.07c PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.881e-31
Identity = 74/173 (42.77%), Postives = 100/173 (57.80%), Query Frame = 3
Query:    6 TFASWGVDYLKYDNCFNTGTS-----PKERYPIMSKALLNSGRPIFFSLCEWGREDPATWAPKIGNSWRTTGDIKDNWN---------------------SMTSLADQNDKWASYAG-PGGYNDPDMLEVGNGGMTTEGYRAHFTIWALA*APLLIGCNIQT---LDKITLIN 434
            TFA WGVDYLKYDNCFN G S       ERY  MS AL  +GRPIF+SLC+WG +    W   I NSWR +GDI D ++                     S+ ++  +    +S AG   G+ND D LEVGNGGM+ E Y+ HFT+WA+  +PL++G ++ +   +DK+ + N
Sbjct:  142 TFADWGVDYLKYDNCFNEGKSGVPLISYERYKRMSDALNKTGRPIFYSLCQWGEDFVWNWGNTIANSWRISGDIFDTFSRKDVRCPCETIECFALQGDHCSVMNIISKASFLSSKAGMNSGWNDLDSLEVGNGGMSFEEYKTHFTMWAILKSPLILGNDVSSMSPMDKLIVSN 314          
BLAST of DY262528 vs. ExPASy Swiss-Prot
Match: NAGAB_CHICK (Alpha-N-acetylgalactosaminidase OS=Gallus gallus GN=NAGA PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.237e-28
Identity = 60/148 (40.54%), Postives = 89/148 (60.14%), Query Frame = 3
Query:    3 KTFASWGVDYLKYDNCFNTGTSPKERYPIMSKALLNSGRPIFFSLCEW----GREDPA---TWAPKIGNSWRTTGDIKDNWNSMTSLAD----QNDKWASYAGPGGYNDPDMLEVGNGGMTTEGYRAHFTIWALA*APLLIGCNIQTL 413
            +TFA WGVD LK D C+++G    + YP M++AL ++GRPI +S C W    G   P    T   +I N WR   DI+D+W+S+ S+ D      D    +AGPG +NDPDML +GN G++ E  R+   +W +  APLL+  +++T+
Sbjct:  127 QTFAEWGVDMLKLDGCYSSGKEQAQGYPQMARALNSTGRPIVYS-CSWPAYQGGLPPKVNYTLLGEICNLWRNYDDIQDSWDSVLSIVDWFFTNQDVLQPFAGPGHWNDPDMLIIGNFGLSYEQSRSQMALWTIMAAPLLMSTDLRTI 273          

HSP 2 Score: 34.6538 bits (78), Expect = 1.237e-28
Identity = 16/28 (57.14%), Postives = 23/28 (82.14%), Query Frame = 1
Query:  457 INQDKLGIQGKKVKKEG-NLEVWARPFN 537
            INQD LGIQG+++ KEG ++EV+ RP +
Sbjct:  289 INQDPLGIQGRRIIKEGSHIEVFLRPLS 316          
BLAST of DY262528 vs. ExPASy Swiss-Prot
Match: MEL_ZYGCI (Alpha-galactosidase OS=Zygosaccharomyces cidri GN=MEL PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.175e-28
Identity = 68/168 (40.48%), Postives = 94/168 (55.95%), Query Frame = 3
Query:    6 TFASWGVDYLKYDNCFNTGT--SPK---ERYPIMSKALLNSGRPIFFSLCEWGREDPATWAPKIGNSWRTTGDIKDNWN----------------------SMTSLADQNDKWASYAGPGGYNDPDMLEVGNGGMTTEGYRAHFTIWALA*APLLIGCNIQTLDKITL 428
            TFASW VDYLKYDNC+N G   +P+   +RY  MS AL  +GRPIF+SLC WG++    W   I NSWR +GD+   ++                      S+ ++ ++       A PGG+ND DMLEVG G M+     AHF++WA+  +PL+IG +I  L   +L
Sbjct:  136 TFASWDVDYLKYDNCYNKGEFGTPEISYKRYKAMSDALNKTGRPIFYSLCNWGQDLTFYWGSAISNSWRMSGDVYPQFDRPDSRCPCSGDEYDCSYPGFHCSIMNILNKAAPMGQNAAPGGWNDLDMLEVGVGNMSDSEEVAHFSMWAIVKSPLIIGADIDDLKDSSL 303          
BLAST of DY262528 vs. ExPASy Swiss-Prot
Match: MEL_ZYGMR (Alpha-galactosidase OS=Zygosaccharomyces mrakii GN=MEL PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.121e-28
Identity = 69/162 (42.59%), Postives = 91/162 (56.17%), Query Frame = 3
Query:    9 FASWGVDYLKYDNCFNTGT-----SPKERYPIMSKALLNSGRPIFFSLCEWGREDPATWAPKIGNSWRTTGDIKDNWNSMTSLADQND-----KWASY-----------------AGPGGYNDPDMLEVGNGGMTTEGYRAHFTIWALA*APLLIGCNIQTL 413
            FA   VDYLKYDNC+N G      +  ERY  MS AL N+GRPIF+SLC WG++    W   I NSWR +GDI  +++   S     D     K+A Y                 A PGG+ND DMLEVG G +T +  +AHF++WA+  +PL+IG ++  L
Sbjct:  138 FARNEVDYLKYDNCYNKGQFGTPQASYERYKAMSDALNNTGRPIFYSLCNWGQDLTFYWGSAIANSWRMSGDITADFDRPDSRCPCGDDEYDCKYAGYHCSIMNILNKAAPMGQNANPGGWNDLDMLEVGVGNLTDDEEKAHFSMWAMVRSPLIIGADVNHL 299          
BLAST of DY262528 vs. ExPASy Swiss-Prot
Match: MEL_SACPS (Alpha-galactosidase OS=Saccharomyces pastorianus GN=MEL PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.704e-26
Identity = 64/162 (39.51%), Postives = 89/162 (54.94%), Query Frame = 3
Query:    9 FASWGVDYLKYDNCFNTGT-----SPKERYPIMSKALLNSGRPIFFSLCEWGREDPATWAPKIGNSWRTTGDIKDNWN----------------------SMTSLADQNDKWASYAGPGGYNDPDMLEVGNGGMTTEGYRAHFTIWALA*APLLIGCNIQTL 413
            FAS GVDYLKYDNC+N G      +  +RY  MS AL  +GRPIF+SLC WG++    W   I NSWR +GDI   +                       S+ ++ ++       AG GG+ND D LEVG G +T +  +AHF++WA+  +PL+IG ++  L
Sbjct:  138 FASNGVDYLKYDNCYNKGQFGAPETSYKRYKAMSDALNKTGRPIFYSLCNWGQDLTHYWGSDIANSWRMSGDIYPQFTRPDSRCPCDGDQFDCAYAGFHCSIMNILNKAAPMGQNAGIGGWNDLDNLEVGVGNLTDDEEKAHFSMWAMVKSPLVIGADVNHL 299          
BLAST of DY262528 vs. ExPASy Swiss-Prot
Match: MEL_SACMI (Alpha-galactosidase OS=Saccharomyces mikatae GN=MEL PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.939e-25
Identity = 63/162 (38.89%), Postives = 89/162 (54.94%), Query Frame = 3
Query:    9 FASWGVDYLKYDNCFNTGT-----SPKERYPIMSKALLNSGRPIFFSLCEWGREDPATWAPKIGNSWRTTGDIKDNWN----------------------SMTSLADQNDKWASYAGPGGYNDPDMLEVGNGGMTTEGYRAHFTIWALA*APLLIGCNIQTL 413
            FA  GVDYLKYDNC+N G      +  +RY  MS AL  +GRPIF+SLC WG++    W   I NSWR +GDI   ++                      S+ ++ ++       AG GG+ND D LEVG G +T +  +AHF++WA+  +PL+IG ++  L
Sbjct:  138 FARNGVDYLKYDNCYNKGKFGTPETSYKRYKAMSDALNKTGRPIFYSLCNWGQDLTFYWGSDIANSWRMSGDIYPEFDRPDSRCPCDGDQYDCSYAGFHCSIMNILNKAAPMGQNAGIGGWNDLDNLEVGVGNLTDDEEKAHFSMWAMVKSPLIIGADVNHL 299          
The following BLAST results are available for this feature:
BLAST of DY262528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
AGAL_COFAR7.039e-6863.59Alpha-galactosidase OS=Coffea arabica PE=1 SV=1[more]
AGAL_CYATE3.493e-6761.35Alpha-galactosidase OS=Cyamopsis tetragonoloba PE=... [more]
AGAL_ORYSJ3.936e-6370.21Alpha-galactosidase OS=Oryza sativa subsp. japonic... [more]
AGAL_DICDI1.472e-4352.82Probable alpha-galactosidase OS=Dictyostelium disc... [more]
AGAL_SCHPO6.881e-3142.77Probable alpha-galactosidase OS=Schizosaccharomyce... [more]
NAGAB_CHICK1.237e-2840.54Alpha-N-acetylgalactosaminidase OS=Gallus gallus G... [more]
MEL_ZYGCI4.175e-2840.48Alpha-galactosidase OS=Zygosaccharomyces cidri GN=... [more]
MEL_ZYGMR7.121e-2842.59Alpha-galactosidase OS=Zygosaccharomyces mrakii GN... [more]
MEL_SACPS8.704e-2639.51Alpha-galactosidase OS=Saccharomyces pastorianus G... [more]
MEL_SACMI1.939e-2538.89Alpha-galactosidase OS=Saccharomyces mikatae GN=ME... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA100AH08RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262528 ID=DY262528; Name=DY262528; organism=Citrus clementina; type=EST; length=793bp
CAAAAACCTTTGCTTCCTGGGGAGTTGATTACTTGAAGTATGATAATTGC
TTTAATACTGGTACAAGCCCTAAAGAAAGATATCCGATAATGAGCAAAGC
ATTATTAAACTCTGGAAGGCCAATCTTTTTCTCTCTATGTGAATGGGGAC
GAGAAGATCCTGCTACTTGGGCTCCAAAAATTGGAAATAGTTGGAGAACC
ACAGGTGACATAAAAGACAACTGGAACAGCATGACATCTCTAGCAGATCA
AAATGATAAATGGGCATCTTATGCTGGACCTGGTGGCTATAATGACCCTG
ATATGCTTGAAGTTGGAAATGGAGGCATGACAACCGAGGGATATCGTGCA
CATTTTACCATTTGGGCTCTAGCTTAGGCTCCTTTATTGATTGGATGCAA
TATTCAAACATTGGACAAAATAACTTTAATAAACTCAGCCACAAGGAAGT
GAATGCATTAACCAAGATAAACTTGGAATTCAGGGGAAAAAAGTCAAAAA
GGAAGGAAATCTTGAGGTATGGGCAAGGCCTTTTAATGGGAAAAAAAAAA
CCAAAAGTTGCTTTGGAAAAAAGGTTCTTCAAAACCTACCATTCCTGCCA
ATTTGGTCGAAAATTGGCCTAAAACTTAAATAATTTCAACTGGGGCTAAA
GGCCCAAAAATTTTTTTGGACCAAAAAAAACCCACCCCTTCCAAAACAAG
GGAAACAAAACCCCCACAAAAAATTTTGGAAAAATCCCCCGTGCTTGTGT
TAAAAAAAGTGTTTTTGTCCTCCTCCCCCTCTCCCCCCCAACA
back to top