DY262558

Overview
NameDY262558
Unique NameDY262558
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1340
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_BRANA (Peptide methionine sulfoxide reductase OS=Brassica napus GN=PMSR PE=2 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 3.966e-92
Identity = 159/210 (75.71%), Postives = 179/210 (85.24%), Query Frame = 1
Query:  280 FPITARPISTHYKPPMNILNKLGFGFRPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKHLLRK 909
            FP TAR IS +  P  N+  +LGFG RP PDPA++  SAIAQGPDDDVP+PGQQFAQFGAGCFWG ELA+QRVPGVTKTEVGYS G++ NP+YEDVCS TT HNE+VRVQYDPKE SF++LLD+FW RHDPTTLNRQGNDVGT+YRSGIYFYT EQEK A+E++E+QQK+LNRKIVTEILPA KFYRAE YHQQYLAKGGR G      K
Sbjct:   40 FPKTARSISVYKSPMNNLFTRLGFGSRPQPDPAAS--SAIAQGPDDDVPSPGQQFAQFGAGCFWGAELAYQRVPGVTKTEVGYSHGFVDNPTYEDVCSETTGHNEIVRVQYDPKEVSFESLLDVFWKRHDPTTLNRQGNDVGTRYRSGIYFYTDEQEKLAREAMEKQQKILNRKIVTEILPATKFYRAENYHQQYLAKGGRMGLSQSAEK 247          
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_LACSA (Peptide methionine sulfoxide reductase OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 333.954 bits (855), Expect = 1.276e-90
Identity = 162/216 (75.00%), Postives = 183/216 (84.72%), Query Frame = 1
Query:  280 FPITA-RPI-----STHYKPPMNILNKLGFGFRPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKHLLRK 909
            FP+T+ +P+     S+     M+ L +LG G R +P  AS + S+IAQGPDDD+PAPGQQFAQFGAGCFWGVELAFQRVPGV+KTEVGY+QG+LHNP+Y D+CSGTTNH+EVVRVQYDPK CSFD+LLD FW RHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAA E+ ER QK LNR +VTEILPAKKFYRAEEYHQQYLAKGGRFGF+    K
Sbjct:   35 FPVTSTKPLFTLRHSSSTPKIMSWLGRLGXGTR-TPADASMDQSSIAQGPDDDIPAPGQQFAQFGAGCFWGVELAFQRVPGVSKTEVGYTQGFLHNPTYNDICSGTTNHSEVVRVQYDPKACSFDSLLDCFWERHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAIEAKERHQKKLNRTVVTEILPAKKFYRAEEYHQQYLAKGGRFGFRQSTEK 249          
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_ARATH (Peptide methionine sulfoxide reductase OS=Arabidopsis thaliana GN=PMSR PE=1 SV=2)

HSP 1 Score: 331.257 bits (848), Expect = 8.270e-90
Identity = 156/211 (73.93%), Postives = 179/211 (84.83%), Query Frame = 1
Query:  280 FPITAR-PISTHYKPPMNILNKLGFGFRPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKHLLRK 909
            FP T+R PIS +  P  N+ N+LGFG RP    A   ++AIAQGPDDDVP+ GQQFAQFGAGCFWGVELA+QRVPGVTKTEVGYS G +HNPSYEDVC+GTT HNEVVRVQYDPKECSF++LLD+FW RHDPTTLNRQG DVGTQYRSGIY+YT EQE+ A+E++E+QQK+LN++IVTEILPA KFYRAE YHQQYLAKGGR G +    K
Sbjct:   39 FPQTSRRPISVYKSPMNNLFNRLGFGSRPQAQ-ADPSSAAIAQGPDDDVPSSGQQFAQFGAGCFWGVELAYQRVPGVTKTEVGYSHGIVHNPSYEDVCTGTTGHNEVVRVQYDPKECSFESLLDVFWNRHDPTTLNRQGGDVGTQYRSGIYYYTDEQERIAREAVEKQQKILNKRIVTEILPATKFYRAENYHQQYLAKGGRMGLRQSAEK 248          
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_SOLLC (Peptide methionine sulfoxide reductase (Fragment) OS=Solanum lycopersicum GN=E4 PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 4.277e-62
Identity = 117/179 (65.36%), Postives = 138/179 (77.09%), Query Frame = 1
Query:  379 STENSAIAQGPDDDVP-APGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQK-VLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKHLLRK 909
            ST N A+   PD D P  PG +FAQF AGCFWGVELAFQRV GV KTEVGYSQG +H+P+Y+ +CSGTT H E +R+Q+DP  C +  LL +FW+RHDPTTLNRQGNDVG QYRSGIY+Y   Q + A+ESLE +QK  +++KIVTEILPAK+FYRAEEYHQQYL KGG  G K    K
Sbjct:   10 STTNPAL--DPDLDSPDQPGLEFAQFAAGCFWGVELAFQRVGGVVKTEVGYSQGNVHDPNYKLICSGTTEHAEAIRIQFDPNVCPYSNLLSLFWSRHDPTTLNRQGNDVGKQYRSGIYYYNDAQAQLARESLEAKQKEFMDKKIVTEILPAKRFYRAEEYHQQYLEKGGGRGCKQSAAK 186          
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_FRAAN (Peptide methionine sulfoxide reductase OS=Fragaria ananassa PE=2 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 1.376e-60
Identity = 112/179 (62.57%), Postives = 136/179 (75.98%), Query Frame = 1
Query:  376 ASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-NRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKHLLRK 909
            +ST N+       D    PG + AQF +GCFWG EL FQRV GV KTEVGYSQG++H+P+Y  VCSGTTNH+EVVRVQ+DP+ C +  LL +FW+RHDPTTLNRQG DVGTQYRSGIY+Y  EQ+  AK+S E +QK   ++++VTEILPAK+FYRAEEYHQQYL KGG  G K   +K
Sbjct:    3 SSTTNNPALDLDSDTPENPGHELAQFASGCFWGSELRFQRVVGVIKTEVGYSQGHVHDPNYRLVCSGTTNHSEVVRVQFDPQVCPYSDLLSVFWSRHDPTTLNRQGGDVGTQYRSGIYYYNEEQDCLAKKSKEAKQKEFKDKRVVTEILPAKRFYRAEEYHQQYLEKGGGNGNKQSAQK 181          
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_METMJ (Peptide methionine sulfoxide reductase msrA OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=msrA PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.358e-44
Identity = 90/155 (58.06%), Postives = 109/155 (70.32%), Query Frame = 1
Query:  424 PAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQE---KAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGG 879
            P    + A FGAGCFWGVE AF+RVPGV +T VG+  G + NP+Y +VC+G T H EVV+V YDP   S+  LLD FW  HDPTT NRQG D+GTQYRS I+ +TPEQE   +A+KE +++  K   R IVT I PA  F+RAEEYHQQY AK G
Sbjct:    3 PEKSLERATFGAGCFWGVEEAFRRVPGVVETAVGFMGGTVENPTYPEVCTGRTGHAEVVQVTYDPGTVSYRALLDTFWDAHDPTTPNRQGPDIGTQYRSVIFVHTPEQEAEARASKEEMDQSGK-FRRPIVTAIEPAGTFWRAEEYHQQYFAKRG 156          
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA1_SYNY3 (Peptide methionine sulfoxide reductase msrA 1 OS=Synechocystis sp. (strain PCC 6803) GN=msrA1 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.022e-44
Identity = 93/183 (50.82%), Postives = 119/183 (65.03%), Query Frame = 1
Query:  364 SPDPASTENSAIAQGPD------DDVPAP---GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK 873
            +P+ A    SA    PD      + + AP   G + A FG GCFWG E  F ++PGV  T VGY+ GY  NP+Y++VC+G T HNEVV V +DP++ S+D LL +FW  H+PT   RQGNDVGTQYRSGIY Y+  Q++AA  S +  Q+ L +    +I TEILPA  FY AE+YHQQYLAK
Sbjct:   15 APNEALPGRSATMPVPDKHFVNGNPLKAPFPQGMETALFGLGCFWGAERKFWQIPGVYSTAVGYAAGYTPNPTYQEVCTGMTGHNEVVLVAFDPQQVSYDQLLKVFWESHNPTQGMRQGNDVGTQYRSGIYTYSEAQQQAALASKQAYQQALQQAGYGEITTEILPAPDFYYAEDYHQQYLAK 197          
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_DICDI (Peptide methionine sulfoxide reductase OS=Dictyostelium discoideum GN=msrA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.170e-43
Identity = 84/141 (59.57%), Postives = 102/141 (72.34%), Query Frame = 1
Query:  445 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYL 867
            A F AGCFW VEL FQRV GVTKT VGY+ G + NP+Y  VCSG T   E V ++YDP++ +++ LL +FW++HDPTTLNRQGNDVGTQYRSGIY++  EQ+  A  S E++Q      I TEILPA  FY AE  HQQYL
Sbjct:    4 ATFAAGCFWSVELLFQRVAGVTKTRVGYTNGTVENPTYRQVCSGKTGCAEAVELEYDPEKVTYNQLLGLFWSKHDPTTLNRQGNDVGTQYRSGIYYHNEEQKNEAIASKEKEQLKYKDPISTEILPAGVFYPAETEHQQYL 144          
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_METTH (Peptide methionine sulfoxide reductase msrA OS=Methanobacterium thermoautotrophicum GN=msrA PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 2.607e-43
Identity = 87/148 (58.78%), Postives = 104/148 (70.27%), Query Frame = 1
Query:  445 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKV--LNRKIVTEILPAKKFYRAEEYHQQYLAKGGR 882
            A FGAGCFWGVE AF++V GV  T VGY  G+L NP+YEDVC+G T H EVV V +DP    +  LLD+FW+ HDPTTLNRQG DVG QYRS I++++ EQ +AA ES  R ++      +IVT I PA  FY AEEYHQQYL K  R
Sbjct:   10 ATFGAGCFWGVEDAFRKVDGVVSTRVGYMGGHLENPTYEDVCTGLTGHAEVVEVTFDPDVVGYSDLLDVFWSIHDPTTLNRQGPDVGEQYRSVIFYHSDEQRRAAIESRRRLEESGRFRDRIVTAIEPAGTFYEAEEYHQQYLEKNPR 157          
BLAST of DY262558 vs. ExPASy Swiss-Prot
Match: MSRA_CYAP8 (Peptide methionine sulfoxide reductase msrA OS=Cyanothece sp. (strain PCC 8801) GN=msrA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.294e-42
Identity = 86/151 (56.95%), Postives = 105/151 (69.54%), Query Frame = 1
Query:  433 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK 873
            G + A FG GCFWG E  F +  GV  T VGY+ G   NP+Y++VC+G T HNEVV V +DPK  S++ LL +FW  H+PT   RQGNDVGTQYRSGIY Y+P+ +KAA+ S E  QK LN+     I TEIL A +FY AE+YHQQYLAK
Sbjct:   46 GLETAMFGLGCFWGAERKFWQCEGVYTTAVGYAAGITPNPTYQEVCTGLTGHNEVVLVVFDPKIISYEELLKVFWESHNPTQGMRQGNDVGTQYRSGIYVYSPQHKKAAETSKEVYQKALNQAGYGDITTEILDAPEFYYAEDYHQQYLAK 196          
The following BLAST results are available for this feature:
BLAST of DY262558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_BRANA3.966e-9275.71Peptide methionine sulfoxide reductase OS=Brassica... [more]
MSRA_LACSA1.276e-9075.00Peptide methionine sulfoxide reductase OS=Lactuca ... [more]
MSRA_ARATH8.270e-9073.93Peptide methionine sulfoxide reductase OS=Arabidop... [more]
MSRA_SOLLC4.277e-6265.36Peptide methionine sulfoxide reductase (Fragment) ... [more]
MSRA_FRAAN1.376e-6062.57Peptide methionine sulfoxide reductase OS=Fragaria... [more]
MSRA_METMJ2.358e-4458.06Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA1_SYNY34.022e-4450.82Peptide methionine sulfoxide reductase msrA 1 OS=S... [more]
MSRA_DICDI1.170e-4359.57Peptide methionine sulfoxide reductase OS=Dictyost... [more]
MSRA_METTH2.607e-4358.78Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_CYAP81.294e-4256.95Peptide methionine sulfoxide reductase msrA OS=Cya... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100BC06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262558 ID=DY262558; Name=DY262558; organism=Citrus clementina; type=EST; length=1340bp
TGGAAAGAGAATGAGGAAATAATAATATTTTAATTTAAAGTAGCTTGAAA
AAAAATTCAATCCAATCTCGATTGAGCAAATCGACACGAGGTAACTGAAT
TTTCTCAACACGTCTCCAAATCTTTAAAACCAGCAATGGTCTTAAACAAG
TGTCTTTCCATAACCACCACCACCACCACCGTCGCCGCTACCATCTCCAA
ATCGCCACTTCTTCTAATCTCCTCTTCTCTCTCTTCACCAAAGAACCCTC
TTTCTCTCTCTAAACCCAATCCGACCCATTTCCCTATCACTGCCCGACCC
ATTTCCACCCACTACAAGCCCCCCATGAACATCCTCAACAAGCTCGGCTT
CGGCTTCAGGCCCAGCCCCGACCCCGCGTCCACGGAGAACTCCGCCATCG
CTCAGGGCCCCGACGACGACGTTCCGGCCCCCGGTCAGCAGTTTGCCCAG
TTCGGCGCTGGCTGCTTTTGGGGCGTCGAATTGGCGTTCCAGAGAGTGCC
AGGTGTCACCAAGACCGAAGTTGGGTACAGCCAAGGCTACTTGCATAACC
CTAGCTACGAGGACGTGTGCAGTGGGACTACCAATCATAATGAAGTTGTT
AGGGTTCAGTATGATCCTAAGGAGTGTAGTTTCGATACTTTGCTTGATAT
GTTTTGGGCTCGCCATGATCCTACCACGCTTAATCGGCAGGGTAATGATG
TTGGAACACAGTACAGATCTGGAATTTATTTTTACACTCCTGAGCAAGAG
AAGGCAGCCAAGGAGTCCTTGGAGAGACAGCAGAAGGTCTTGAACAGGAA
AATTGTCACCGAAATCCTACCTGCCAAGAAGTTCTACCGAGCTGAGGAAT
ACCACCAGCAGTATCTTGCAAAAGGGGGTCGATTTGGATTCAAACATCTA
CTGAGAAAGGCTGCAATGATCCTATCAGGTGCTATGGCTAAATAGTACCC
TGCTATTACAGTTAATTTTCAGCTTTTTTCTGAATTCTAACCAATAATAC
TTGCATTCTTGCTATGATAAGAATGCCAAATGTATTTAGTGTCTGACCCT
GGGGTATGTAACTATCATAGTTCCTTTAAACCATCATCTAAATCTGTTAT
TTCCCCTGGTCCTGTTTTTTTAAAGGTTTAAGTAAAACCTTTCAAAAATT
TTCGGAAAATTGGTTGGGTAAAATATGGAAAACGGGTGTTTTTTTTTTCC
TACAAAAAACCCAAAGGGGGGGCTTCTCTAAATTAGAAAAGAAACCTCTC
TAATTTTAAAAAATTTTTCCGGTTCTTTTTTTTCTCCTCCTCTCCCTTTT
TTCTCTTCTTTTTTTTTTCTTCTAACTAATCTCCTTTGGG
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