DY262578

Overview
NameDY262578
Unique NameDY262578
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1283
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262578 vs. ExPASy Swiss-Prot
Match: AEEP_BACSU (L-Ala-D/L-Glu epimerase OS=Bacillus subtilis GN=ykfB PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 9.676e-32
Identity = 93/233 (39.91%), Postives = 129/233 (55.36%), Query Frame = 3
Query:  249 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVA------GLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRNDWEGL 923
            R E   + VPL  PF  A   +   E+V +RI   +G VGWGEAP    +T +   +     S    VLK  PA+   S+ G  A       LL G+   S +AAVEMAL D  A+   +PL+++ GG  +T+ TD T+ + SP E A  A  Y KQGF TLK+KVGK ++  DI  ++ IR  V       LDAN+G++P+EAV  + K+ + G+   L EQPVH++D  GL
Sbjct:    5 RIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSI---ESAIHHVLK--PALLGKSLAGYEAILHDIQHLLTGNM--SAKAAVEMALYDGWAQMCGLPLYQMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGL 230          
BLAST of DY262578 vs. ExPASy Swiss-Prot
Match: AEEP_THEMA (L-Ala-D/L-Glu epimerase OS=Thermotoga maritima GN=TM_0006 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 4.651e-26
Identity = 72/212 (33.96%), Postives = 111/212 (52.36%), Query Frame = 3
Query:  288 PFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRNDWEGL 923
            PF I  S   +  NV + I L +G  G+GEA     V  E  +  +   +   E++          +F +   L     F S++AAV+ A +DA+++ +   +  L GG  + I TD T+ I +     + A K  ++GF  +K+KVG+NLKEDIE +  I  V   + +I+DAN GY  +EAVE    +Y+ G+   ++EQPV R D EGL
Sbjct:   19 PFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEALLAIENAVREMITGIDVRNYARIFEITDRLFG---FPSLKAAVQFATLDALSQELGTQVCYLLGGKRDEIETDKTVGIDTVENRVKEAKKIFEEGFRVIKIKVGENLKEDIEAVEEIAKVTRGAKYIVDANMGYTQKEAVEFARAVYQKGIDIAVYEQPVRREDIEGL 227          
BLAST of DY262578 vs. ExPASy Swiss-Prot
Match: AEEP_CLOAB (L-Ala-D/L-Glu epimerase OS=Clostridium acetobutylicum GN=CA_C0192 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.654e-23
Identity = 76/223 (34.08%), Postives = 121/223 (54.26%), Query Frame = 3
Query:  267 LNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGL---LPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRNDWEGL 923
            L+VPL  PF  A   ++ V +V ++I    G VG+G A     VT +   T  ++ +    + +    M +     ++  L   + G+   S +AAV++AL D   +    PL++L GG  N + TDITI + SP E +  +    K G+ TLK+KVGKN K DI+ +R IR A+  + +  +DAN+G++P+EA+  L ++   G+   L EQPV   + EGL
Sbjct:   11 LSVPLKKPFKTAVRSVNSVNDVVVKIITDTGNVGFGSAASTGLVTGDI--TESIEGAINNYIKRSIVGMDIEDFEAILIKLDNCIVGN--TSAKAAVDIALYDLYGQRYGAPLYKLLGGFRNKLETDITISVNSPEEMSRDSVDAVKLGYKTLKIKVGKNPKLDIKRMREIRKAIGYEVNLRIDANQGWQPKEAIRALNEIENEGLKIELVEQPVKAWNLEGL 229          
BLAST of DY262578 vs. ExPASy Swiss-Prot
Match: CATB2_ACILW (Muconate cycloisomerase 1-2 OS=Acinetobacter lwoffii GN=catB2 PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 7.702e-13
Identity = 66/241 (27.39%), Postives = 115/241 (47.72%), Query Frame = 3
Query:  237 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS---EACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG-------VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAI-RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRNDWEGL 923
            V ++  E   ++VP I P  ++ + ++    V +RI  ++G VG GE   +  +   ++    +K +       +LK   A   G+    + GL  G++FA  R+AVE AL DA A+ + +PL  LFGG       V+ T+ +  T   +  AE    A ++R       KLK+G + L +D+  + AI +A+       +D N+ +   EA+   ++  +  V   L EQP+   +  GL
Sbjct:    6 VKIESVETILVDVPTIRPHRLSVATMNCQTLVLVRIRCADGVVGVGEGTTIGGLAYGEESPESIKVNIDTYFAPLLKGLDATRPGAAMATLRGLFQGNRFA--RSAVETALFDAQAQRLGVPLSELFGGRIRDSVDVAWTLASGDTTRDIDEAERVFEAKRHR-----VFKLKIGSRALADDVAHVVAIQKALQGRGEVRVDVNQAWTESEAIWAGKRFADASV--ALIEQPIAAENRAGL 237          
The following BLAST results are available for this feature:
BLAST of DY262578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
AEEP_BACSU9.676e-3239.91L-Ala-D/L-Glu epimerase OS=Bacillus subtilis GN=yk... [more]
AEEP_THEMA4.651e-2633.96L-Ala-D/L-Glu epimerase OS=Thermotoga maritima GN=... [more]
AEEP_CLOAB1.654e-2334.08L-Ala-D/L-Glu epimerase OS=Clostridium acetobutyli... [more]
CATB2_ACILW7.702e-1327.39Muconate cycloisomerase 1-2 OS=Acinetobacter lwoff... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA100BE02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262578 ID=DY262578; Name=DY262578; organism=Citrus clementina; type=EST; length=1283bp
AAAACACTTGCAACCGCGACATTAACGATAGCAACAAGATTCTCTTCAAC
TTTAACAACAACTGCTTGTTTCACCGAGAATCCAATCAAACCCGACCGCC
AATGCTTTCAGTTGGATTCTATCTCCCTTTCAATAACATCAAACCCCAAA
AACCCATTTGCCAGATGGCGTCATCACCACCGGCTGCTGCTGCCCCGACC
AGCTTCAGCTTCAAGAACTTGACGCAAACGTTCACAGTGGATGTCCAGAG
AGCAGAGAACAGGCCCTTGAACGTGCCGCTGATTGCGCCTTTTACGATTG
CTACTTCGAGGCTTGATCAAGTGGAGAATGTGGCTATCAGAATCGAGCTT
AGTAATGGGTGTGTTGGGTGGGGCGAGGCCCCTGTTTTGCCTCACGTGAC
TGCTGAGGATCAGCAGACTGCGATGGTCAAAGCCAGTGAGGCTTGTGAGG
TTTTGAAAGAGAGCCCTGCCATGGCTTTGGGTTCTGTTTTTGGTGTGGTT
GCTGGCCTTCTCCCTGGTCATCAGTTTGCTTCTGTTAGGGCAGCAGTCGA
GATGGCACTGATTGATGCAGTTGCGAAAAGTGTCAGCATGCCTTTGTGGA
GACTCTTTGGTGGAGTTTCAAATACTATAACCACTGATATAACAATTCCA
ATTGTTTCCCCTGCTGAAGCAGCTGAACTGGCTTCAAAATATCGCAAACA
AGGATTCACTACCCTGAAGCTTAAGGTGGGAAAGAATCTGAAGGAAGACA
TAGAAGTCCTACGAGCAATACGTGCTGTCCACCCTGATTCTTCATTCATC
TTGGATGCCAATGAGGGTTACAAACCACAGGAAGCTGTTGAAGTTCTTGA
AAAATTATATGAAATGGGGGTCACTCCAGTTCTCTTTGAGCAACCAGTTC
ATAGAAATGATTGGGAAGGCCTTGGCCCATGTAATTCATATTGCCAAAAA
CAAATTTGGGGTTATCGTTGCAGCTGAAGAGAGCTGTCCGAATTTGGATG
ATGTCAAAAAAATTGTAAAAGGAAACCTGGCGAAGTTATAAACATTAACC
TTGCAAAATTTGGAATCCTTTGGGCCCTGGAAATTAAAAAATTTGTAGGG
CTTCCAGAATAAAATTTAAAAATGGGGGGATAGGTTAAAAACAAAAAAAC
CCAGGGGCTTTCCGGGGCATTCCCCTGCCGGGGCTTGGGGGGTTTAAAAA
TTATTGGAACATAAAAAACCCCCCTTCCCTTTTTTCCGAAAAAAATCCCT
TTTCTTGAAGAGGTAATTGAAAAAGGTGCGGGG
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