DY262688

Overview
NameDY262688
Unique NameDY262688
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1274
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262688_ssr276 microsatellite DY262688_ssr276:276..299. BLAST: Citrus ESTs to Prunus persica proteins V1
DY262688_ssr178 microsatellite DY262688_ssr178:178..201. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY262688 vs. ExPASy Swiss-Prot
Match: TM1L2_XENLA (TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 6.015e-26
Identity = 86/261 (32.95%), Postives = 130/261 (49.81%), Query Frame = 3
Query:  318 VDKATSELLISPDWTMNIDICDSINSHQWQAKDVVKAVKKRLQ-HKNSKVQLLALTLLETMVKNCGDFVHFQIAERNVL-GEMVKIV--KKKPDMQLRDKILVLLDSWQEAFGG----PGGKHPQYYWAYEDLRRYGVQFPKRSPDA-APIFTPPVSHPTLGQA-----------------------QASYGMPSNSSXRLDETMATEVETLS--FSSLDSMRDVMELLSDMLQAVNPSDREAVKDEGIVDLVSWCRVHQK 998
            ++KAT   L S DWT+N++ICD IN  +   KD ++A+KKRL  ++N +  +LALT+LET VKNCG   H Q+  R+ + G +VKI+  K  P   ++DK+L L+ +W +AF       G  H      YE+L+R G++FP    DA +PI TP  S P +  A                          Y  P      +   ++   E +    S LD +R  ++++S+ML  + P    A   E + DL   CR  Q+
Sbjct:   17 IEKATDGSLQSEDWTLNMEICDIINETEEGPKDAMRALKKRLNGNRNYREVMLALTVLETCVKNCGHRFHVQVTHRDFIDGILVKIISPKNNPPTIVQDKVLALIQAWADAFRSSPDLTGVVH-----IYEELKRKGIEFPMADLDALSPIHTPQRSVPEVDPATNMHTSQTQKRDSFSNLSNSKSTSTPYTAPGGPPPNVGGPISANSEQIGRLRSELDIVRGNVKVMSEMLTEMTPGQEGASDLELLQDLNRTCRTMQE 272          
BLAST of DY262688 vs. ExPASy Swiss-Prot
Match: TM1L2_HUMAN (TOM1-like protein 2 OS=Homo sapiens GN=TOM1L2 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 3.899e-25
Identity = 85/259 (32.82%), Postives = 131/259 (50.58%), Query Frame = 3
Query:  318 VDKATSELLISPDWTMNIDICDSINSHQWQAKDVVKAVKKRLQ-HKNSKVQLLALTLLETMVKNCGDFVHFQIAERNVLGE-MVKIV--KKKPDMQLRDKILVLLDSWQEAFGG----PGGKHPQYYWAYEDLRRYGVQFPKRSPDA-APIFTPPVSHPTLGQA---------------------QASYGMPSNSSXRLDETMATEVETLS--FSSLDSMRDVMELLSDMLQAVNPSDREAVKDEGIVDLVSWCRVHQK 998
            ++KAT   L S DWT+N++ICD IN  +   KD ++A+KKRL  ++N +  +LALT+LET VKNCG   H  +A R+ +   +VKI+  K  P   ++DK+L L+ +W +AF       G  H      YE+L+R GV+FP    DA +PI TP  S P +  A                      A Y  P   +  +   +    E ++   S LD +R   +++S+ML  + P   ++   E + +L   CR  Q+
Sbjct:   17 LEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLNGNRNYREVMLALTVLETCVKNCGHRFHILVANRDFIDSVLVKIISPKNNPPTIVQDKVLALIQAWADAFRSSPDLTGVVH-----IYEELKRKGVEFPMADLDALSPIHTPQRSVPEVDPAATMPRSQSQQRTSAGSYSSPPPAPYSAPQAPALSVTGPITANSEQIARLRSELDVVRGNTKVMSEMLTEMVPGQEDSSDLELLQELNRTCRAMQQ 270          
BLAST of DY262688 vs. ExPASy Swiss-Prot
Match: TM1L2_MOUSE (TOM1-like protein 2 OS=Mus musculus GN=Tom1l2 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.134e-24
Identity = 86/258 (33.33%), Postives = 132/258 (51.16%), Query Frame = 3
Query:  318 VDKATSELLISPDWTMNIDICDSINSHQWQAKDVVKAVKKRLQ-HKNSKVQLLALTLLETMVKNCGDFVHFQIAERNVLGE-MVKIV--KKKPDMQLRDKILVLLDSWQEAFGG----PGGKHPQYYWAYEDLRRYGVQFPKRSPDA-APIFTPPVSHPTLGQA-------------QASYGMPSNSSXRLDETMATEV--------ETLS--FSSLDSMRDVMELLSDMLQAVNPSDREAVKDEGIVDLVSWCRVHQ 995
            ++KAT   L S DWT+N++ICD IN  +   KD ++A+KKRL  ++N +  +LALT+LET VKNCG   H  +A R+ +   +VKI+  K  P   ++DK+L L+ +W +AF       G  H      YE+L+R G++FP    DA +PI TP  S P +  A               +Y  P  +S    +  A  V        E ++   S LD +R   +++S+ML  + P   ++   E + +L   CR  Q
Sbjct:   17 LEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLSGNRNYREVMLALTVLETCVKNCGHRFHLLVANRDFIDSVLVKIISPKNNPPTIVQDKVLALIQAWADAFRSSPDLTGVVH-----IYEELKRRGIEFPMADLDALSPIHTPQRSVPEMDPAATIPRSQTQPRTTAGTYSSPPPASYSTLQAPALSVTGPITANSEQIARLRSELDIVRGNTKVMSEMLTEMVPGQEDSSDLELLQELNRTCRAMQ 269          
BLAST of DY262688 vs. ExPASy Swiss-Prot
Match: TOM1_MOUSE (Target of Myb protein 1 OS=Mus musculus GN=Tom1 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.615e-21
Identity = 83/252 (32.94%), Postives = 122/252 (48.41%), Query Frame = 3
Query:  318 VDKATSELLISPDWTMNIDICDSINSHQWQAKDVVKAVKKRLQ-HKNSKVQLLALTLLETMVKNCGDFVHFQIAER----NVLGEMVKIVKKKPDMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFPKRSPD-AAPIFTPPVSHPTLGQAQASYGMPSNSSXRLDETM-ATEVETLSF------------------SSLDSMRDVMELLSDMLQAVNPSDREAVKDEGIVDLVSWCRVHQK 998
            ++KAT   L S DW +N++ICD IN  +   KD  +AVKKR+  +KN    +LALT+LET VKNCG   H  +A +    NVL   + + K  P   + DK+L L+ SW +AF             YEDLRR G++FP    D  +PI TP  +            + SN+S R D +  AT + T +                   S L+ +   + ++S+ML  + P+  E    E + +L   CR  Q+
Sbjct:   17 IEKATDGSLQSEDWALNMEICDIINETEEGPKDAFRAVKKRIMGNKNFHEVMLALTVLETCVKNCGHRFHVLVANQDFVENVLVRTI-LPKNNPPTIVHDKVLNLIQSWADAFRS-SPDLTGVVAVYEDLRRKGLEFPMTDLDMLSPIHTPQRTVFNSETPSRQNSVSSNTSQRGDLSQHATPLPTPAVLPGDSPITPTPEQIGKLRSELEMVSGNVRVMSEMLTELVPTQVEPADLELLQELNRTCRAMQQ 266          
BLAST of DY262688 vs. ExPASy Swiss-Prot
Match: TOM1_HUMAN (Target of Myb protein 1 OS=Homo sapiens GN=TOM1 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 7.609e-21
Identity = 80/251 (31.87%), Postives = 122/251 (48.61%), Query Frame = 3
Query:  318 VDKATSELLISPDWTMNIDICDSINSHQWQAKDVVKAVKKRL-QHKNSKVQLLALTLLETMVKNCGDFVHFQIAERNVLGEMVK---IVKKKPDMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFPKRSPD-AAPIFTP--PVSHPTLGQAQASYG---------------MPSNSSXRLDETMATEVETLS--FSSLDSMRDVMELLSDMLQAVNPSDREAVKDEGIVDLVSWCRVHQK 998
            ++KAT   L S DW +N++ICD IN  +   KD ++AVKKR+  +KN    +LALT+LET VKNCG   H  +A ++ +  ++    + K  P   + DK+L L+ SW +AF             YEDLRR G++FP    D  +PI TP   V +      Q S G               +P+      D  +A   E +    S L+ +   + ++S+ML  + P+  E    E + +L   CR  Q+
Sbjct:   17 IEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRS-SPDLTGVVTIYEDLRRKGLEFPMTDLDMLSPIHTPQRTVFNSETQSGQDSVGTDSSQQEDSGQHAAPLPAPPILSGDTPIAPTPEQIGKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQ 266          
BLAST of DY262688 vs. ExPASy Swiss-Prot
Match: TOM1_CHICK (Target of Myb protein 1 OS=Gallus gallus GN=TOM1 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 7.609e-21
Identity = 77/251 (30.68%), Postives = 121/251 (48.21%), Query Frame = 3
Query:  318 VDKATSELLISPDWTMNIDICDSINSHQWQAKDVVKAVKKRL-QHKNSKVQLLALTLLETMVKNCGDFVHFQIAERNVLGEMVK---IVKKKPDMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFPKRSPD-AAPIFTPP----VSHPTLGQAQASYGMPS---------------NSSXRLDETMATEVETLSFSSLDSMRDVMELLSDMLQAVNPSDREAVKDEGIVDLVSWCRVHQK 998
            +++AT   L   DW++N++ICD IN  +   KD  +A+KKR+  +KN    +LALT+LET VKNCG   H  +A ++ +  ++    + K  P   + DK+L L+ SW +AF             YEDLRR G++FP    D  +PI TP      S+   GQ   +   P                ++S  +  T   E      S L+ +   ++++S+ML  + PS  E    E + +L   CR  Q+
Sbjct:   17 IERATDGSLRGEDWSLNMEICDIINETEEGPKDAFRAIKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHILVASQDFVESVLVRTILPKNNPPAIVHDKVLTLIQSWADAFRS-SPDLTGVVAVYEDLRRKGLEFPMTDLDMLSPIHTPRRSVYSSNSQSGQNSPAVNSPQQMESILHPVTLPSGRDTSSNVPITPTQEQIKKLRSELEVVNGNVKVMSEMLTELVPSQAETSDLELLQELNRTCRAMQQ 266          
BLAST of DY262688 vs. ExPASy Swiss-Prot
Match: HGS_RAT (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Rattus norvegicus GN=Hgs PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.099e-19
Identity = 49/134 (36.57%), Postives = 82/134 (61.19%), Query Frame = 3
Query:  318 VDKATSELLISPDWTMNIDICDSINSHQWQAKDVVKAVKKRLQHKNSKVQLLALTLLETMVKNCGDFVHFQIAERNVLGEMVKIVKKKPDMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFPK 719
            +DKATS+LL+  DW   + ICD I     QAK  V ++KK++  KN  V L AL ++E++VKNCG  VH ++A +  + E+ +++K++ ++ +R+KIL L+ +W  AF     K+      Y+ ++  G  FP+
Sbjct:   12 LDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKELLKRQVEVNVRNKILYLIQAWAHAFRNE-PKYKVVQDTYQIMKVEGHVFPE 144          
BLAST of DY262688 vs. ExPASy Swiss-Prot
Match: HGS_MOUSE (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Mus musculus GN=Hgs PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.099e-19
Identity = 49/134 (36.57%), Postives = 82/134 (61.19%), Query Frame = 3
Query:  318 VDKATSELLISPDWTMNIDICDSINSHQWQAKDVVKAVKKRLQHKNSKVQLLALTLLETMVKNCGDFVHFQIAERNVLGEMVKIVKKKPDMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFPK 719
            +DKATS+LL+  DW   + ICD I     QAK  V ++KK++  KN  V L AL ++E++VKNCG  VH ++A +  + E+ +++K++ ++ +R+KIL L+ +W  AF     K+      Y+ ++  G  FP+
Sbjct:   12 LDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKELLKRQVEVNVRNKILYLIQAWAHAFRNE-PKYKVVQDTYQIMKVEGHVFPE 144          
BLAST of DY262688 vs. ExPASy Swiss-Prot
Match: HGS_HUMAN (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Homo sapiens GN=HGS PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.874e-19
Identity = 49/134 (36.57%), Postives = 81/134 (60.45%), Query Frame = 3
Query:  318 VDKATSELLISPDWTMNIDICDSINSHQWQAKDVVKAVKKRLQHKNSKVQLLALTLLETMVKNCGDFVHFQIAERNVLGEMVKIVKKKPDMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFPK 719
            +DKATS+LL+  DW   + ICD I     QAK  V ++KK++  KN  V L AL ++E++VKNCG  VH ++A +  + E+  ++K++ ++ +R+KIL L+ +W  AF     K+      Y+ ++  G  FP+
Sbjct:   12 LDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNE-PKYKVVQDTYQIMKVEGHVFPE 144          
BLAST of DY262688 vs. ExPASy Swiss-Prot
Match: HGS_BOVIN (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Bos taurus GN=HGS PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.874e-19
Identity = 49/134 (36.57%), Postives = 81/134 (60.45%), Query Frame = 3
Query:  318 VDKATSELLISPDWTMNIDICDSINSHQWQAKDVVKAVKKRLQHKNSKVQLLALTLLETMVKNCGDFVHFQIAERNVLGEMVKIVKKKPDMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFPK 719
            +DKATS+LL+  DW   + ICD I     QAK  V ++KK++  KN  V L AL ++E++VKNCG  VH ++A +  + E+  ++K++ ++ +R+KIL L+ +W  AF     K+      Y+ ++  G  FP+
Sbjct:   12 LDKATSQLLLETDWESILQICDLIRQGDTQAKYAVSSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNE-PKYKVVQDTYQIMKVEGHVFPE 144          
The following BLAST results are available for this feature:
BLAST of DY262688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
TM1L2_XENLA6.015e-2632.95TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE... [more]
TM1L2_HUMAN3.899e-2532.82TOM1-like protein 2 OS=Homo sapiens GN=TOM1L2 PE=1... [more]
TM1L2_MOUSE1.134e-2433.33TOM1-like protein 2 OS=Mus musculus GN=Tom1l2 PE=1... [more]
TOM1_MOUSE2.615e-2132.94Target of Myb protein 1 OS=Mus musculus GN=Tom1 PE... [more]
TOM1_HUMAN7.609e-2131.87Target of Myb protein 1 OS=Homo sapiens GN=TOM1 PE... [more]
TOM1_CHICK7.609e-2130.68Target of Myb protein 1 OS=Gallus gallus GN=TOM1 P... [more]
HGS_RAT1.099e-1936.57Hepatocyte growth factor-regulated tyrosine kinase... [more]
HGS_MOUSE1.099e-1936.57Hepatocyte growth factor-regulated tyrosine kinase... [more]
HGS_HUMAN1.874e-1936.57Hepatocyte growth factor-regulated tyrosine kinase... [more]
HGS_BOVIN1.874e-1936.57Hepatocyte growth factor-regulated tyrosine kinase... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA100CF08RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262688 ID=DY262688; Name=DY262688; organism=Citrus clementina; type=EST; length=1274bp
CAGAGAATCAAAGAAAATTATTAATAGAGAAGAAAGAATAAAAGAGACGA
TTATTTGCGTGTTATTAGAGAGCCAACGATAACGTTGAAGGTAAAAAAAA
AAAAAAGAATATATAAATTCTTTGAGCTTGAAAGCATTCATTGGCGGTGT
ATTTTTCTTGGACCGAATTTTCTCGTTAAACAAACAAACAAACAAACAAA
CAGGAAAAAGTTTTCATTTTCTTTTTCTGTTATCTAATTTGGAGGGAGAG
ATAGAGAGTAAAGATGATGTCGTCATCGTCGTCGTCGTCGTCGTCGTCGT
CTTCGGCGACTGTGGCAGTTGACAAGGCGACCAGCGAGCTTTTGATTAGT
CCTGATTGGACTATGAACATCGATATCTGTGATTCCATCAATTCTCATCA
GTGGCAGGCGAAAGATGTTGTGAAAGCAGTGAAGAAAAGGTTACAGCACA
AGAACTCAAAAGTGCAACTTCTTGCGTTGACGCTTTTAGAGACGATGGTG
AAGAATTGTGGTGATTTTGTTCATTTTCAAATTGCTGAGAGGAATGTCTT
GGGAGAGATGGTTAAAATTGTGAAGAAGAAGCCAGATATGCAGCTGAGGG
ATAAAATCTTGGTTTTATTAGATTCTTGGCAAGAGGCATTCGGTGGACCT
GGGGGAAAACATCCTCAGTACTACTGGGCTTATGAGGATTTAAGGCGTTA
TGGAGTACAATTTCCCAAGCGTTCACCAGATGCTGCTCCTATATTTACAC
CTCCTGTTTCCCACCCCACTCTAGGACAAGCTCAAGCTAGTTATGGAATG
CCTAGCAATTCCTCANGAAGGCTTGACGAAACAATGGCGACAGAGGTTGA
AACTTTAAGTTTTTCAAGCTTGGATTCTATGCGAGATGTTATGGAGCTGT
TAAGTGACATGCTGCAAGCTGTAAATCCTAGCGACCGTGAGGCAGTAAAA
GATGAAGGAATTGTTGATCTCGTCAGTTGGTGTCGGGTCCATCAAAAAAG
CTCATGCAGATGCTACAACCACCGGGATGAAGAATTTCCTGGCCGGGGTT
TGGAATAAATGACATTCCGCAAAACTGGCTGGCAAAAATGGAGCTAAACC
ATCGGGTTGCCCATACCACCGAAATTTAAAATTTAAATCCAAACCCAAAG
AAAACAGGTCCCCCCACCACCCCCCAAACCACACGGGGGGTGGGGAAACC
GGCCCCCACCCCTAAAGGGAAACCACCCCGCGCCCGGTGGTGTGTGGGTG
GGAACAGAGGGGCCCCCACATAAC
back to top