DY262700

Overview
NameDY262700
Unique NameDY262700
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1300
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2348 contig Ccv1_Contig2348:1..1300. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY262700 vs. ExPASy Swiss-Prot
Match: AGD14_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD14 OS=Arabidopsis thaliana GN=AGD14 PE=1 SV=2)

HSP 1 Score: 293.508 bits (750), Expect = 1.835e-78
Identity = 148/232 (63.79%), Postives = 166/232 (71.55%), Query Frame = 1
Query:  259 MGSXXXXXXXXXXXXGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGGKTCDKPPKDTQGLGSHLDESRRAXXXXXXXXXXXXXXXXEDRRYGKLGAVLTRKPGSDRGHYVGKISSLVHSPGRMSEQMFEDRFANEGSCSRISDYSVSSGGDPFQS 954
            MGS            GLMKLPPNRRCINCNSLGPQYVCT FWTFVCM CSGIHREFTHRVKSVSMSKFTS+EVE LQNGGNQRAREIYLK+WD QRQRLP+NSN  +VR+FIKNVYV ++YAG    DKP KD+Q   S  D +RRA                E+RRYGK+    T K  S +G +  K SS V+SPGR S+ MFED+F+NE S  R SDYSVSS GDPF+S
Sbjct:    2 MGSKREEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREFTHRVKSVSMSKFTSKEVEVLQNGGNQRAREIYLKNWDHQRQRLPENSNAERVREFIKNVYVQKKYAGANDADKPSKDSQDHVSSEDMTRRANSYHSYSQSPPYDYQYEERRYGKIPLGFTGKSASVKGLH-AKASSFVYSPGRFSDHMFEDQFSNEDSAPRASDYSVSSAGDPFRS 232          
BLAST of DY262700 vs. ExPASy Swiss-Prot
Match: AGFG1_RAT (Arf-GAP domain and FG repeats-containing protein 1 OS=Rattus norvegicus GN=Agfg1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.171e-16
Identity = 43/104 (41.35%), Postives = 65/104 (62.50%), Query Frame = 1
Query:  316 LPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT--HRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRY 621
            LP NR+C +C+  GP YV     +FVC +CSG  R     HRVKS+SM+ FT QE+E LQ  GN+  ++I+L  +D +   +PD  +  KV++F++  Y  +R+
Sbjct:   23 LPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRW 126          
BLAST of DY262700 vs. ExPASy Swiss-Prot
Match: AGFG1_MOUSE (Arf-GAP domain and FG repeats-containing protein 1 OS=Mus musculus GN=Agfg1 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.171e-16
Identity = 43/104 (41.35%), Postives = 65/104 (62.50%), Query Frame = 1
Query:  316 LPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT--HRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRY 621
            LP NR+C +C+  GP YV     +FVC +CSG  R     HRVKS+SM+ FT QE+E LQ  GN+  ++I+L  +D +   +PD  +  KV++F++  Y  +R+
Sbjct:   23 LPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRW 126          
BLAST of DY262700 vs. ExPASy Swiss-Prot
Match: AGFG1_HUMAN (Arf-GAP domain and FG repeats-containing protein 1 OS=Homo sapiens GN=AGFG1 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.171e-16
Identity = 43/104 (41.35%), Postives = 65/104 (62.50%), Query Frame = 1
Query:  316 LPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT--HRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRY 621
            LP NR+C +C+  GP YV     +FVC +CSG  R     HRVKS+SM+ FT QE+E LQ  GN+  ++I+L  +D +   +PD  +  KV++F++  Y  +R+
Sbjct:   23 LPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRW 126          
BLAST of DY262700 vs. ExPASy Swiss-Prot
Match: AGFG1_BOVIN (Arf-GAP domain and FG repeats-containing protein 1 OS=Bos taurus GN=AGFG1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.171e-16
Identity = 43/104 (41.35%), Postives = 65/104 (62.50%), Query Frame = 1
Query:  316 LPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT--HRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRY 621
            LP NR+C +C+  GP YV     +FVC +CSG  R     HRVKS+SM+ FT QE+E LQ  GN+  ++I+L  +D +   +PD  +  KV++F++  Y  +R+
Sbjct:   23 LPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRW 126          
BLAST of DY262700 vs. ExPASy Swiss-Prot
Match: AGFG2_HUMAN (Arf-GAP domain and FG repeats-containing protein 2 OS=Homo sapiens GN=AGFG2 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.096e-14
Identity = 46/119 (38.66%), Postives = 66/119 (55.46%), Query Frame = 1
Query:  325 NRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT--HRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGGKTCDKPPKDTQGLGS 675
            NR C  C   G  YV     +FVC TCSG+ R     HRVKS+SM+ FT  EV  LQ+ GN+  R+I+L  +D +   +PD+ +  KV++F++  Y  +R+       K P  T+G  S
Sbjct:   44 NRHCFECAQRGVTYVDITVGSFVCTTCSGLLRGLNPPHRVKSISMTTFTEPEVVFLQSRGNEVCRKIWLGLFDARTSLVPDSRDPQKVKEFLQEKYEKKRWYVPPDQVKGPTYTKGSAS 162          
BLAST of DY262700 vs. ExPASy Swiss-Prot
Match: AGFG2_MOUSE (Arf-GAP domain and FG repeats-containing protein 2 OS=Mus musculus GN=Agfg2 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.188e-14
Identity = 44/116 (37.93%), Postives = 65/116 (56.03%), Query Frame = 1
Query:  325 NRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT--HRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGGKTCDKPPKDTQG 666
            NR C  C   G  YV     +FVC TCSG+ R     HRVKS+SM+ FT  EV  LQ+ GN+  R+I+L  +D +   +PD+ +  KV++F++  Y  +R+        PP+  +G
Sbjct:   44 NRHCFECAQRGVTYVDITVGSFVCTTCSGLLRGLNPPHRVKSISMTTFTEPEVLFLQSRGNEVCRKIWLGLFDARTSLIPDSRDPQKVKEFLQEKYEKKRWY------VPPEQVKG 153          
BLAST of DY262700 vs. ExPASy Swiss-Prot
Match: AGD5_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.648e-12
Identity = 39/124 (31.45%), Postives = 66/124 (53.23%), Query Frame = 1
Query:  304 GLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREF---THRVKSVSMSKFTSQEVEALQNGGNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAG-GKTCDKPPKDTQ 663
            GL+K P NR C +C + GP++   N   F+CM CSGIHR       +V+S ++  +  ++V  +Q+ GN +A       W+ +   LP N +   + +FI+  Y ++R+   G+    PP+  Q
Sbjct:   21 GLLKHPENRECADCKTKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNDKANSY----WEAE---LPPNYDRVGIENFIRAKYEEKRWVSRGEKARSPPRVEQ 137          
The following BLAST results are available for this feature:
BLAST of DY262700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
AGD14_ARATH1.835e-7863.79Probable ADP-ribosylation factor GTPase-activating... [more]
AGFG1_RAT1.171e-1641.35Arf-GAP domain and FG repeats-containing protein 1... [more]
AGFG1_MOUSE1.171e-1641.35Arf-GAP domain and FG repeats-containing protein 1... [more]
AGFG1_HUMAN1.171e-1641.35Arf-GAP domain and FG repeats-containing protein 1... [more]
AGFG1_BOVIN1.171e-1641.35Arf-GAP domain and FG repeats-containing protein 1... [more]
AGFG2_HUMAN1.096e-1438.66Arf-GAP domain and FG repeats-containing protein 2... [more]
AGFG2_MOUSE3.188e-1437.93Arf-GAP domain and FG repeats-containing protein 2... [more]
AGD5_ARATH6.648e-1231.45Probable ADP-ribosylation factor GTPase-activating... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA100CG09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262700 ID=DY262700; Name=DY262700; organism=Citrus clementina; type=EST; length=1300bp
CACAGAGCGTTTTTGTCCCCAATCGAGCTGATTTGATTATTCCAGTTCCT
CAACAAAAATTCAAAAACCCTAAAAGAAACCCTTTTCATTTTTGATCGTA
ATTGCATCGAAGCGGCCGAGTAAAACCGTTAAAAAATCAAAAATTTGAAA
CTGGGTTGTTTTTTTTTTTGCGAGGAAAAGATCAAAATTGAGTTGGGTTT
TGAAGGGATAGGGTTTTTTTTTTTTTTAAAAAAAAATTGTTTGAATTTTT
GTTGAGAAATGGGAAGTAGAAAAGAAGAAGAGAGGAATGAGAAGATAATC
AGAGGGCTCATGAAGTTGCCACCAAATCGACGCTGTATTAACTGCAACAG
CTTGGGTCCTCAATATGTTTGTACCAACTTCTGGACTTTTGTTTGCATGA
CTTGCAGTGGAATACATCGTGAGTTTACTCATCGTGTGAAGTCTGTATCC
ATGTCTAAGTTTACCTCCCAAGAAGTTGAAGCACTTCAAAATGGTGGTAA
TCAGCGTGCAAGGGAAATATATCTAAAGGATTGGGACTTCCAAAGGCAAA
GATTGCCTGATAATAGCAATGTTAACAAGGTCCGAGATTTCATCAAGAAT
GTATATGTTGATAGAAGATATGCTGGAGGAAAGACCTGTGACAAGCCTCC
AAAAGATACACAGGGCCTAGGCAGTCATTTAGATGAGTCAAGACGTGCCA
GTTCTTATCATTCTTATTCTCAGAGTCCACCTTATGACTATCAATATGAA
GACCGGCGTTACGGAAAACTTGGTGCTGTGCTTACTAGGAAACCAGGTTC
AGATCGAGGCCACTACGTTGGGAAGATCTCTAGTCTTGTCCACAGTCCTG
GTCGCATGAGTGAACAAATGTTTGAGGACAGGTTTGCAAATGAAGGCTCA
TGTTCTAGGATTTCTGACTACTCTGTGTCTAGTGGAGGGGATCCCTTCCA
ATCGGGTGCACATCTCCAACTGTGAAAAGGAGCTGGATTTCACGGCCCCC
TGTTCGCCTTTCAGGGAGGTGGCTCTTTGAGGGCAATTTAAAAAAAAGGA
AAAGGGAATCCCATTCAAAAAAAACCCATTCCTTGGAAACAGGGGGATCT
TTGAAAAGAACCCTGGATCTTTTAAATCGTGGAATTTCGGGGGGCTTAAA
GAAGTCTCTTGAAAAGGGAAACAAAGGGGGGGGGCCCCCCCCGGGAAAAA
AATTTTCCCCTTTTCCCCAAACCCTCTGGGGTGGTGGGGGAAAAAAAGGG
AGGTATCGGGGGCAATTTTTTTGGTGAGGGCCCCCTGCGTTGTAATACCA
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