DY262705

Overview
NameDY262705
Unique NameDY262705
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1178
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262705_ssr40 microsatellite DY262705_ssr40:40..65. BLAST: Citrus ESTs to Prunus persica proteins V1
DY262705_ssr192 microsatellite DY262705_ssr192:192..206. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY262705 vs. ExPASy Swiss-Prot
Match: WIPI3_XENTR (WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus tropicalis GN=wdr45l PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 2.424e-42
Identity = 96/244 (39.34%), Postives = 136/244 (55.74%), Query Frame = 2
Query:  365 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLLHQIETLANPRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN--AHDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVGGTRLAKVPKGVDKTEITSNALSPTVQWLAGARDKGRVKI 1087
            L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G   +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   LH  ET  NP+GLC L  +S+ S+LA PG   G V+I          ++  AH+  ++C               +GTLIRIF+T  G  + ++ +G     I     +     +  + D G V I
Sbjct:   13 LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGYVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGAHTGHVQIVDLASTEKPPVDIPAHEGILSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNEDASLICVSSDHGTVHI 256          
BLAST of DY262705 vs. ExPASy Swiss-Prot
Match: WIPI3_CHICK (WD repeat domain phosphoinositide-interacting protein 3 OS=Gallus gallus GN=WDR45L PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 2.424e-42
Identity = 99/245 (40.41%), Postives = 137/245 (55.92%), Query Frame = 2
Query:  365 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLLHQIETLANPRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKL---INAHDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVGGTRLAKVPKGVDKTEITSNALSPTVQWLAGARDKGRVKI 1087
            L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G   +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   LH  ET  NP+GLC L  +S+ S+LA PG   G V+I     N  K    I AH+  ++C               +GTLIRIF+T  G  + ++ +G     I     +     +  + D G V I
Sbjct:   13 LLYAGFNQDHGCFACGMENGFRVYNADPLKEKEKQEFPEGGVGHVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQIVDLA-NTEKPPVDIPAHEGILSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNQDASLICVSSDHGTVHI 256          
BLAST of DY262705 vs. ExPASy Swiss-Prot
Match: WIPI3_XENLA (WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus laevis GN=wdr45l PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 3.166e-42
Identity = 96/244 (39.34%), Postives = 136/244 (55.74%), Query Frame = 2
Query:  365 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLLHQIETLANPRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN--AHDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVGGTRLAKVPKGVDKTEITSNALSPTVQWLAGARDKGRVKI 1087
            L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G   +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   LH  ET  NP+GLC L  +S+ S+LA PG   G V+I          ++  AH+  ++C               +GTLIRIF+T  G  + ++ +G     I     +     +  + D G V I
Sbjct:   13 LLYSGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVSYVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGAHTGHVQIVDLASTEKPPVDIPAHEGILSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNEDASLICVSSDHGTVHI 256          
BLAST of DY262705 vs. ExPASy Swiss-Prot
Match: WIPI3_MOUSE (WD repeat domain phosphoinositide-interacting protein 3 OS=Mus musculus GN=Wdr45l PE=2 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 7.053e-42
Identity = 95/244 (38.93%), Postives = 136/244 (55.74%), Query Frame = 2
Query:  365 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLLHQIETLANPRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN--AHDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVGGTRLAKVPKGVDKTEITSNALSPTVQWLAGARDKGRVKI 1087
            L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G   +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   LH  ET  NP+GLC L  +S+ S+LA PG   G V++          ++  AH+  ++C               +GTLIRIF+T  G  + ++ +G     I     +     +  + D G V I
Sbjct:   13 LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNQDASLICVSSDHGTVHI 256          
BLAST of DY262705 vs. ExPASy Swiss-Prot
Match: WIPI3_HUMAN (WD repeat domain phosphoinositide-interacting protein 3 OS=Homo sapiens GN=WDR45L PE=2 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 7.053e-42
Identity = 95/244 (38.93%), Postives = 136/244 (55.74%), Query Frame = 2
Query:  365 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLLHQIETLANPRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN--AHDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVGGTRLAKVPKGVDKTEITSNALSPTVQWLAGARDKGRVKI 1087
            L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G   +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   LH  ET  NP+GLC L  +S+ S+LA PG   G V++          ++  AH+  ++C               +GTLIRIF+T  G  + ++ +G     I     +     +  + D G V I
Sbjct:   13 LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNQDASLICVSSDHGTVHI 256          
BLAST of DY262705 vs. ExPASy Swiss-Prot
Match: WIPI3_PONAB (WD repeat domain phosphoinositide-interacting protein 3 OS=Pongo abelii GN=WDR45L PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.203e-41
Identity = 95/244 (38.93%), Postives = 136/244 (55.74%), Query Frame = 2
Query:  365 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLLHQIETLANPRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN--AHDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVGGTRLAKVPKGVDKTEITSNALSPTVQWLAGARDKGRVKI 1087
            L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G   +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   LH  ET  NP+GLC L  +S+ S+LA PG   G V++          ++  AH+  ++C               +GTLIRIF+T  G  + ++ +G     I     +     +  + D G V I
Sbjct:   13 LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINSNQDASLICVSSDHGTVHI 256          
BLAST of DY262705 vs. ExPASy Swiss-Prot
Match: WIPI3_DANRE (WD repeat domain phosphoinositide-interacting protein 3 OS=Danio rerio GN=wdr45l PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 2.680e-41
Identity = 98/245 (40.00%), Postives = 134/245 (54.69%), Query Frame = 2
Query:  365 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLLHQIETLANPRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKL---INAHDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVGGTRLAKVPKGVDKTEITSNALSPTVQWLAGARDKGRVKI 1087
            L+   +NQD+GCFA G   GFR+YN +P KE  + +   GG   VEMLFRCN LALVG G   +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   LH  ET  NP+GLC L  +S+ S+LA P    G V+I     N  K    I AH+  + C               +GTLIRIF+T  G  + ++ +G     I     +     +  + D G V I
Sbjct:   13 LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKHEFLEGGVGHVEMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPATHSGHVQIVDLA-NTEKPPVDIPAHEGVLCCITLNLQGTRIATASEKGTLIRIFDTSAGQLIQELRRGSQTANIYCINFNQDASLICVSSDHGTVHI 256          
BLAST of DY262705 vs. ExPASy Swiss-Prot
Match: WIPI4_HUMAN (WD repeat domain phosphoinositide-interacting protein 4 OS=Homo sapiens GN=WDR45 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 2.274e-32
Identity = 89/253 (35.18%), Postives = 128/253 (50.59%), Query Frame = 2
Query:  371 SVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKS-GGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD------HQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVD-LKLLHQIETLANPRGLCCLSHHSSTSVLACPGLQRGQVRIEHF-----GLNMIKL-INAHDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVGGTRLAKVPKGVDKTEITSNALSPTVQWLAGARDKGRVKI 1087
            S+ +NQD  CF      G RIYN EP  E    D +  G   +VEML R N+LALVG G + ++    V+IWDD       + + + EF F   V SV++  D+IV+VL+++IYVYSF D  + L + +T  NP+GLC L       +L  PG + G +++        G +     INAH S IAC               +GTLIR+F+T    +L ++ +G D   +     S    +L  + DKG V I
Sbjct:   11 SLRFNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSMGLVEMLHRSNLLALVGGGSSPKFSEISVLIWDDAREGKDSKEKLVLEFTFTKPVLSVRMRHDKIVIVLKNRIYVYSFPDNPRKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKCGSLQLVDLASTKPGTSSAPFTINAHQSDIACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATLYCINFSHDSSFLCASSDKGTVHI 263          
BLAST of DY262705 vs. ExPASy Swiss-Prot
Match: WIPI4_MOUSE (WD repeat domain phosphoinositide-interacting protein 4 OS=Mus musculus GN=Wdr45 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 8.641e-32
Identity = 87/253 (34.39%), Postives = 127/253 (50.20%), Query Frame = 2
Query:  371 SVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKS-GGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD------HQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDL-KLLHQIETLANPRGLCCLSHHSSTSVLACPGLQRGQVRIEHF-----GLNMIKL-INAHDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVGGTRLAKVPKGVDKTEITSNALSPTVQWLAGARDKGRVKI 1087
            S+ +NQD  CF      G RIYN EP  E    D +  G   +VEML R N+LALVG G + ++    V+IWDD       + + + EF F   V +V++  D+IV+VL ++IYVYSF D  + L + +T  NP+GLC L       +L  PG + G +++        G +     INAH S +AC               +GTLIR+F+T    +L ++ +G D   +     S    +L  + DKG V I
Sbjct:   11 SLHFNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSVGLVEMLHRSNLLALVGGGSSPKFSEISVLIWDDAREGKDSKDKLVLEFTFTKPVLAVRMRHDKIVIVLRNRIYVYSFPDSPRKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKCGSLQLVDLASTKPGTSSAPFTINAHQSDVACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATLYCINFSHDSSFLCASSDKGTVHI 263          
BLAST of DY262705 vs. ExPASy Swiss-Prot
Match: WIPI4_XENLA (WD repeat domain phosphoinositide-interacting protein 4 OS=Xenopus laevis GN=wdr45 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 2.514e-31
Identity = 86/247 (34.82%), Postives = 122/247 (49.39%), Query Frame = 2
Query:  380 WNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKS-GGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH---QSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKL-LHQIETLANPRGLCCLSHHSSTSVLACPGLQRGQVRIEHF------GLNMIKLINAHDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVGGTRLAKVPKGVDKTEITSNALSPTVQWLAGARDKGRVKI 1087
            +NQD  CF      G RI+N EP  E    D +  G    VEML RCN+LALVG G N ++    V+IWDD    + + + EF F   V SV+L  D+IV+ L+++IYVYSF D    L + +T  NP+GLC L       +L  PG + G +++           +    INAH S + C               +GTLIR+F+T    +L ++ +G D   +     S    +L  + DKG V I
Sbjct:   12 FNQDQSCFCCAMETGVRIFNIEPLMEKGHLDQEQVGSVGQVEMLHRCNLLALVGGGSNPKFSDISVLIWDDSRDGKDKLVLEFTFTKPVLSVRLRSDKIVIALKNRIYVYSFPDNPTKLFEFDTRDNPKGLCDLCPSLEKQLLIFPGHKCGSLQLVDLCNAKPGSSSAPFTINAHQSELGCLAINQQGTLVASASRKGTLIRLFDTQTREQLVELRRGTDPATLYCINFSHDSSFLCSSSDKGTVHI 258          
The following BLAST results are available for this feature:
BLAST of DY262705 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
WIPI3_XENTR2.424e-4239.34WD repeat domain phosphoinositide-interacting prot... [more]
WIPI3_CHICK2.424e-4240.41WD repeat domain phosphoinositide-interacting prot... [more]
WIPI3_XENLA3.166e-4239.34WD repeat domain phosphoinositide-interacting prot... [more]
WIPI3_MOUSE7.053e-4238.93WD repeat domain phosphoinositide-interacting prot... [more]
WIPI3_HUMAN7.053e-4238.93WD repeat domain phosphoinositide-interacting prot... [more]
WIPI3_PONAB1.203e-4138.93WD repeat domain phosphoinositide-interacting prot... [more]
WIPI3_DANRE2.680e-4140.00WD repeat domain phosphoinositide-interacting prot... [more]
WIPI4_HUMAN2.274e-3235.18WD repeat domain phosphoinositide-interacting prot... [more]
WIPI4_MOUSE8.641e-3234.39WD repeat domain phosphoinositide-interacting prot... [more]
WIPI4_XENLA2.514e-3134.82WD repeat domain phosphoinositide-interacting prot... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA100CH02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262705 ID=DY262705; Name=DY262705; organism=Citrus clementina; type=EST; length=1178bp
TTCCTTTACGTCTCTCTCTGTGAGTCGGGATGAATTGAATCTCTCTCTCT
CTCTCTCTCTCTCTCTTTCAGATCTCTCACAAAGCGAAAGAGAAAATTTG
ATCTGATGATCATTAATTTGATTTCTCATATCACAGCATCAAGGGGGTGC
CACTGAAATTATTCACAATCGAGAAGATTTTCATCTTTGATTGCTGCTGC
TGCTGCTGACCGTTTCTTCGTCCCACATGACTTCAACTGTTTCGACATCT
CGAGAAATTCTTCCACCGGGCCCCTTTGGATCCCCCAATGCTGGCGCTTC
GGCTTCGGCTTCGGCTTCATTTGGCCACCCGCAAACGGCGTTCAGTGATG
TTGATGAAATTGAGTTGATCTCTGTGTCTTGGAACCAGGACTATGGTTGT
TTTGCCGCTGGAACTAGTTGTGGGTTTCGAATTTATAATTGTGAGCCGTT
TAAGGAAACTTTTAGACGTGATTTGAAAAGTGGTGGGTTTAGGATTGTTG
AGATGTTGTTTCGTTGTAATATATTGGCACTCGTTGGTGCTGGGGATAAT
TCTCAGTATCCTCCTACTAAAGTTATTATTTGGGATGATCATCAGAGCAG
GTGCATTGGTGAGTTTGCGTTTAGGTCTGATGTTCGCTCTGTGAAATTGA
GTAGGGATCGAATTGTGGTTGTTCTTGAGCATAAGATATATGTTTATAGT
TTTGTTGATCTCAAGTTGCTTCATCAGATTGAGACTCTTGCGAATCCGAG
GGGGCTTTGTTGTCTTTCTCATCATTCGAGTACTTCTGTGTTGGCTTGCC
CGGGTCTCCAACGTGGACAGGTTCGCATTGAGCACTTTGGGCTCAATATG
ATAAAGCTAATAAATGCTCATGATTCTCATATTGCGTGCTTTACCCTCAC
ATTGGATGGCCTGCTTCTTGCTACTGCTAGTACCAGGGGCACTTTGATAA
GAATTTTCAACACCGTGGGAGGTACTCGCTTGGCAAAAGTTCCAAAAGGT
GTTGACAAAACAGAGATTACCAGTAATGCTCTGTCCCCAACCGTCCAATG
GTTGGCGGGGGCAAGGGACAAAGGCCGGGTCAAAATTTCGTCCCCGGGGT
TAAGGGGGTTGGAAGGACCCCTCTCCCCCCCTTTTACCCTTTCCCAAAAG
ACAAAATTTCTAAACCTTTCTTTTCTTT
back to top