DY262710

Overview
NameDY262710
Unique NameDY262710
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1289
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY262710 vs. ExPASy Swiss-Prot
Match: ARMC8_MOUSE (Armadillo repeat-containing protein 8 OS=Mus musculus GN=Armc8 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 9.477e-11
Identity = 68/274 (24.82%), Postives = 113/274 (41.24%), Query Frame = 3 
Query:  117 RLTSGERDVKLKALRELKNQIIGNRTKKLSFLKLGAVPAVAGILXXXXXXXXXXXNDENDRIVKDIIVQSAAVLGSFACGFEAGVRAVLDAGAFPNLSRLLSYTDEKVVDAGARSLKMIYQSKMAPKYDFLQXXXXXXXXXXXXXXXXXXXXXGASIISHSCKTSLEQKLLFDAGVLKRLTSLL-GGSLIQRDASLESIATIFKNNPEVVSQFVGP-DTGRTLSCII--ELVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLEL 926
            RL   +    L+ + ++KN +IGN  +K + + LGAVP +  +L             + +    ++  + A VLGS A G E  V+++LD    P L + L   D K ++A  R L+ I+ S + P+                             I SH CK    Q +LF+ G ++ +  LL   S   R  +L+  + +   NP+V    V     G  L  I    L +D+    +L ++ CL  +  A      D  I  K +  L+ +
Sbjct:   27 RLFDPDPQKVLQGVIDMKNAVIGNNKQKANLIVLGAVPRLLYLL-------------QQETSSTELKTECAVVLGSLAMGTENNVKSLLDCHIIPALLQGLLSPDLKFIEACLRCLRTIFTSPVTPEELLYTDATVIPHLMALLSRSRYTQEYICQIFSHCCKGPDHQTILFNHGAVQNIAHLLTSPSYKVRMQALKCFSVLAFENPQVSMTLVNVLVDGELLPQIFVKMLQRDKPIEMQLTSAKCLTYMCRAGAIRTDDSCIVLKTLPCLVRM 287
The following BLAST results are available for this feature:
BLAST of DY262710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ARMC8_MOUSE9.477e-1124.82Armadillo repeat-containing protein 8 OS=Mus muscu... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA100CH07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262710 ID=DY262710; Name=DY262710; organism=Citrus clementina; type=EST; length=1289bp
TTTTCTCTCTCTATCGGACAACCACCTCACCTTCCTGGAGCTCGCCGCCG
TTGACTACCATGCCGACCACCACCGCCTCCGCCGTCTGCACCACCGTCGG
CAACAACATCCTTCTCCGCCTCACCTCCGGCGAGCGCGACGTCAAGCTCA
AGGCTCTACGAGAACTCAAGAACCAAATCATCGGCAACCGGACGAAGAAG
CTCTCGTTCCTCAAGCTCGGAGCCGTTCCCGCCGTCGCCGGAATCCTATC
CGACGCCGTATCGGCCGTTGATGTCGCTGATAATGATGAGAATGATAGGA
TTGTTAAGGATATTATTGTGCAGTCAGCTGCAGTGCTTGGCAGCTTCGCT
TGCGGCTTCGAAGCCGGCGTCCGAGCCGTGCTGGACGCCGGCGCGTTTCC
TAATTTGTCGCGGCTCCTTTCTTATACTGATGAAAAGGTGGTGGATGCTG
GTGCTCGTTCCCTTAAGATGATTTATCAATCAAAAATGGCTCCAAAGTAT
GATTTCCTTCAAGAGGAAAATATGGAGTTTCTTCTTTCGTTGCTGAATAA
TGAAAGTGAAAATGTTAGCGGGCTTGGTGCAAGTATTATTTCTCATTCTT
GTAAGACAAGTCTAGAGCAGAAGTTGTTGTTTGATGCAGGAGTTTTAAAG
AGGCTTACTAGCCTTCTGGGGGGTTCTCTAATTCAGAGAGATGCTAGTTT
AGAGTCTATAGCTACAATTTTCAAAAACAATCCTGAAGTTGTTTCACAGT
TTGTAGGACCTGACACAGGAAGAACTTTGAGTTGTATAATTGAATTAGTA
AAGGATAGGTTTGCCCGGACAAGATTGCTGGCTTCATTGTGCTTGATTGT
CATAAGAAATGCTTCCCCTTGCTATCTGCAAGATGTAGGAATCAAAACTA
AACTGATAAATAATCTACTTGAGCTTCTTGATGATCCTGGGTCAGGTGGG
GGATGATTCTTCCTTTGCTTTTTTCTAGTTAATAACCAAAGAAGAAAAAT
ATGCAAAAACTAACATTTTGAGGGTAATTGTCGTTGATAAACTTTACAAC
CACTTGGCAAAAGGCTTCCTAACAATCCCGGGCGTTTTGAAGGGTAAAAT
AATGGGGCTTTGGCTGAAATGGGCCTCCAAAGTGGGAAATGTTTGTCGGT
TTTAAAAGGTTTTGTTCTTGTGGGGGTTTTTAAATTTTGGATAATTTAAA
GCCACCAACACCCAAGAAAAAATCTTCTGAAATGTAAATAAATGGGCCTT
CTTTTTGGTGGTGGGCTTTTAAAAAAAAGGGTTTATTTC
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