DY262716

Overview
NameDY262716
Unique NameDY262716
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1218
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2350 contig Ccv1_Contig2350:1..1218. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY262716 vs. ExPASy Swiss-Prot
Match: VPS91_SCHPO (Vacuolar protein sorting-associated protein 9a OS=Schizosaccharomyces pombe GN=vps901 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 2.385e-40
Identity = 95/254 (37.40%), Postives = 140/254 (55.12%), Query Frame = 1
Query:  142 HDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFA------SIP------DDVKTDEQLSEKIALVQQFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNIDAQALSMEESEF 867
            H FLE++R  SA    K +KSF+  F+            ++ FL  +      +  WA  S+ E+D+A EG+EK V+ +L+T +F+       IP      DDV+ D  LSEK+ L Q ++  ENLDIK    +   + LA  EL++IN Y APRDK++C+LNCCKV                  AD F+P+LI+V ++A P  L SN+ YIQR+R   +L GE  Y+ + ++ A SFI  +D  +L++ E EF
Sbjct:  116 HMFLEQLRSSSAEPVAKYLKSFLSEFTKRRWTVNYQVKLIRDFLKFINEKIEQYEPWASGSQAEIDNAKEGMEKLVLNRLYTSLFSPEIAKSGIPLSSEHSDDVEEDRVLSEKMELFQ-WITEENLDIKKQKSSSKFFKLAADELRRINDYHAPRDKIICLLNCCKVIFSYLRNVV-----KEESADMFVPILIFVVLQARPAHLVSNIQYIQRFRSPEKLTGEVMYYLSTLMGAMSFIETLDCSSLTITEEEF 363          
BLAST of DY262716 vs. ExPASy Swiss-Prot
Match: GAPD1_HUMAN (GTPase-activating protein and VPS9 domain-containing protein 1 OS=Homo sapiens GN=GAPVD1 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 1.076e-24
Identity = 75/218 (34.40%), Postives = 109/218 (50.00%), Query Frame = 1
Query:  190 KSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPD-DVKTDEQLSEKIALVQQFVRPEN--LDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNID 834
            K I+ FI  F       ++ +A V+ FL  +  A     +W   SEE+L  A   +E+ VM ++F   F    D D+  D+ L E I  + + V   +  L I   +  E  W  AQ E++ I+ YK PRDK+ CIL  C               ++ PGAD+F+PVL++V IKANPP L S + YI  +   S L GE +Y++    +A  FI  ID
Sbjct: 1263 KKIREFIQDFQKLTAADDK-TAQVEDFLQFLYGAMAQDVIWQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRALQIPEVYLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANE---DSVPGADDFVPVLVFVLIKANPPCLLSTVQYISSF-YASCLSGEESYWWMQFTAAVEFIKTID 1475          
BLAST of DY262716 vs. ExPASy Swiss-Prot
Match: GAPD1_BOVIN (GTPase-activating protein and VPS9 domain-containing protein 1 OS=Bos taurus GN=GAPVD1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.076e-24
Identity = 75/218 (34.40%), Postives = 109/218 (50.00%), Query Frame = 1
Query:  190 KSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPD-DVKTDEQLSEKIALVQQFVRPEN--LDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNID 834
            K I+ FI  F       ++ +A V+ FL  +  A     +W   SEE+L  A   +E+ VM ++F   F    D D+  D+ L E I  + + V   +  L I   +  E  W  AQ E++ I+ YK PRDK+ CIL  C               ++ PGAD+F+PVL++V IKANPP L S + YI  +   S L GE +Y++    +A  FI  ID
Sbjct: 1198 KKIREFIQDFQKLTAADDK-TAQVEDFLQFLYGAMAQDVIWQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRALQIPEVYLKEAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANE---DSVPGADDFVPVLVFVLIKANPPCLLSTVQYISSF-YASCLSGEESYWWMQFTAAVEFIKTID 1410          
BLAST of DY262716 vs. ExPASy Swiss-Prot
Match: GAPD1_XENLA (GTPase-activating protein and VPS9 domain-containing protein 1 OS=Xenopus laevis GN=gapvd1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 3.130e-24
Identity = 72/216 (33.33%), Postives = 108/216 (50.00%), Query Frame = 1
Query:  196 IKSFIVSFSNNAPDPERDSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPD-DVKTDEQLSEKIALVQQFVRPEN--LDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNID 834
            I  FI  F       ++ +A V+ FL ++  A     +W   SEE+L  A   +E+ +M ++F   F    D D+  D+ L E I  + + V   +  L I   +  E  W  AQ E++ I+ YK PRDK+ CIL  C                + PGAD+F+PVL++V IKANP  L S + YI  +   +RL+GE +Y++    +A  FI  ID
Sbjct: 1239 IHEFIQDFQKLTAADDK-TAQVEEFLQSLYGAMAQDVIWQNASEEQLQDAQIAIERSIMNRIFKLAFNPNQDADILRDQVLHEHIKRLSKVVTANHRALQIPEVYLREAPWPSAQTEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANEY---SVPGADDFVPVLVFVLIKANPTYLLSTVQYISSF-YSNRLIGEESYWWMQFTAAVEFIKTID 1449          
BLAST of DY262716 vs. ExPASy Swiss-Prot
Match: GAPD1_MOUSE (GTPase-activating protein and VPS9 domain-containing protein 1 OS=Mus musculus GN=Gapvd1 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 3.130e-24
Identity = 74/218 (33.94%), Postives = 108/218 (49.54%), Query Frame = 1
Query:  190 KSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPD-DVKTDEQLSEKIALVQQFVRPEN--LDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNID 834
            K I+ FI  F       ++ +A V+ FL  +        +W   SEE+L  A   +E+ VM ++F   F    D D+  D+ L E I  + + V   +  L I   +  E  W  AQ E++ I+ YK PRDK+ CIL  C               ++ PGAD+F+PVL++V IKANPP L S + YI  +   S L GE +Y++    +A  FI  ID
Sbjct: 1243 KKIREFIQDFQKLTAADDK-TAQVEDFLQFLYGVMAQDVIWQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRALQIPEVYLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANE---DSVPGADDFVPVLVFVLIKANPPCLLSTVQYISSF-YASCLSGEESYWWMQFTAAVEFIKTID 1455          
BLAST of DY262716 vs. ExPASy Swiss-Prot
Match: RABX5_BOVIN (Rab5 GDP/GTP exchange factor OS=Bos taurus GN=RABGEF1 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 5.338e-24
Identity = 70/216 (32.41%), Postives = 114/216 (52.78%), Query Frame = 1
Query:  241 ERDSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFA-SIPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQ-NETSWLLAQK--ELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLV-GEAAYFFTNMLSAESFISNIDAQALSMEESEFER 873
            E  S   Q F  N+    +          E ++   + +EKY+MT+L+  VF     DD K D  + ++I  +  +V P+ L +  + +  E S ++ +   ++ +++  + PRDKL CI  C K                P  AD+FLP LIY+ +K NPP+L SN+ YI R+   SRL+ GE  Y+FTN+  A +FI  +DAQ+L++ + +F+R
Sbjct:  177 EEQSECTQDFYQNVAERMQTR---GKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALH-WVTPQMLCVPVNEEIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSK----HIFNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDR 384          
BLAST of DY262716 vs. ExPASy Swiss-Prot
Match: RABX5_MOUSE (Rab5 GDP/GTP exchange factor OS=Mus musculus GN=Rabgef1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.189e-23
Identity = 81/287 (28.22%), Postives = 141/287 (49.13%), Query Frame = 1
Query:   31 RKTSESQSPLQTYSRNTQA*ISGGGRLMENADVFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAP-DPERDSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFA-SIPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQ-NETSWLLAQK--ELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLV-GEAAYFFTNMLSAESFISNIDAQALSMEESEFER 873
            ++  E+++P  + +R T          +E   V     DFL+   + +  +  K  K F+ +         E  S   Q F  N+    +          E+++   + +EK++MT+L+  VF     DD K D  + ++I  +  +V P+ L +  + +  E S ++ +   ++ +++  + PRDKL CI  C K                P  AD+FLP LIY+ +K NPP+L SN+ YI R+   SRL+ GE  Y+FTN+  A +FI  +DAQ+L++ + +F+R
Sbjct:  115 KEIQEAKAPSPSINRQTS---------IETDRVTKEFIDFLKTFHK-TGQEVYKQTKMFLEAMPYKRDLSIEEQSECTQDFYQNVAERMQTR---GKVPPEKVEKIMDQIEKHIMTRLYKFVFCPETTDDEKKDLAIQKRIRALH-WVTPQMLCVPVNEEIPEVSDMVVKAITDIIEMDSKRVPRDKLACITRCSK----HIFNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDR 383          
BLAST of DY262716 vs. ExPASy Swiss-Prot
Match: RABX5_HUMAN (Rab5 GDP/GTP exchange factor OS=Homo sapiens GN=RABGEF1 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 1.553e-23
Identity = 65/187 (34.76%), Postives = 107/187 (57.22%), Query Frame = 1
Query:  328 EELDSAGEGLEKYVMTKLFTRVFA-SIPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQ-NETSWLLAQK--ELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLV-GEAAYFFTNMLSAESFISNIDAQALSMEESEFER 873
            E ++   + +EKY+MT+L+  VF     DD K D  + ++I  ++ +V P+ L +  +    E S ++ +   ++ +++  + PRDKL CI  C K                P  AD+FLP LIY+ +K NPP+L SN+ YI R+   SRL+ GE  Y+FTN+  A +FI  +DAQ+L++ + +F+R
Sbjct:  419 ERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALR-WVTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSK----HIFNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDR 600          
BLAST of DY262716 vs. ExPASy Swiss-Prot
Match: VPS9_YEAST (Vacuolar protein sorting-associated protein 9 OS=Saccharomyces cerevisiae GN=VPS9 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 7.708e-23
Identity = 79/263 (30.04%), Postives = 129/263 (49.05%), Query Frame = 1
Query:  130 FLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAP--DPERDSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFAS---------IPD----DVKTDEQLSEKIALVQQFVRPENLDIKASFQN---ETSWLLAQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNIDAQALSMEESE 864
            F     F+++++ P A   VK  KSF+ +F           +   +  F   +   F  +  +      ++ +A EG+EK +M KL++R F+          + D    D+  D+ L EKI   + F+ P  LDI  +  N        LA KEL KIN +K+PRDK+VC+LN  KV                 GAD F+PVLIY  +K     L SN+ YI+R+R    + GE  Y+ +++ +A +FI ++  ++L++++ E
Sbjct:   60 FYDFQIFIKQLQTPGADPLVKYTKSFLRNFLAQRLLWTVSEEIKLISDFKTFIYDKFTLYEPFRSLDNSKMRNAKEGMEKLIMGKLYSRCFSPSLYEILQKPLDDEHMKDLTNDDTLLEKIRHYR-FISPIMLDIPDTMPNARLNKFVHLASKELGKINRFKSPRDKMVCVLNASKVIFGLLKHTKLEQN----GADSFIPVLIYCILKGQVRYLVSNVNYIERFRSPDFIRGEEEYYLSSLQAALNFIMSLTERSLTIDDHE 317          
BLAST of DY262716 vs. ExPASy Swiss-Prot
Match: RME6_DROME (Receptor-mediated endocytosis protein 6 homolog OS=Drosophila melanogaster GN=CG1657 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.965e-18
Identity = 61/173 (35.26%), Postives = 91/173 (52.60%), Query Frame = 1
Query:  325 EEELDSAGEGLEKYVMTKLFTRV-FASIPDDVKTDEQLSEKIALVQQFVRPEN--LDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNID 834
            E ++D+A   +E+ ++ +++ +V F +   DV  DE LS  I  +Q+FV P +  L I   +  E  W  AQ++L  +  YK PR+KL CI+NC                   P AD+ LPVLIYV I ANPP L S + YI  +  + +L GE  +++T   S   FI  +D
Sbjct: 1542 EWQVDAARVAIERMLLEQMYEQVMFPNEDADVSRDEVLSAHIGKLQRFVHPAHPALCIAQEYLGEAPWTFAQQQLCHMAAYKTPREKLQCIINCISSIMSLLRMSSGRV----PAADDLLPVLIYVVIMANPPYLLSTVEYISCFLGK-KLEGEDEFYWTLFGSVVKFIKTMD 1709          
The following BLAST results are available for this feature:
BLAST of DY262716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
VPS91_SCHPO2.385e-4037.40Vacuolar protein sorting-associated protein 9a OS=... [more]
GAPD1_HUMAN1.076e-2434.40GTPase-activating protein and VPS9 domain-containi... [more]
GAPD1_BOVIN1.076e-2434.40GTPase-activating protein and VPS9 domain-containi... [more]
GAPD1_XENLA3.130e-2433.33GTPase-activating protein and VPS9 domain-containi... [more]
GAPD1_MOUSE3.130e-2433.94GTPase-activating protein and VPS9 domain-containi... [more]
RABX5_BOVIN5.338e-2432.41Rab5 GDP/GTP exchange factor OS=Bos taurus GN=RABG... [more]
RABX5_MOUSE1.189e-2328.22Rab5 GDP/GTP exchange factor OS=Mus musculus GN=Ra... [more]
RABX5_HUMAN1.553e-2334.76Rab5 GDP/GTP exchange factor OS=Homo sapiens GN=RA... [more]
VPS9_YEAST7.708e-2330.04Vacuolar protein sorting-associated protein 9 OS=S... [more]
RME6_DROME1.965e-1835.26Receptor-mediated endocytosis protein 6 homolog OS... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100DA02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262716 ID=DY262716; Name=DY262716; organism=Citrus clementina; type=EST; length=1218bp
AATCAATCATCATATCTGTACGTACACAACCGCAAGACATCCGAGTCTCA
GTCTCCGCTTCAGACTTATTCCCGTAATACGCAAGCTTAGATATCTGGCG
GTGGACGTTTAATGGAGAACGCCGACGTGTTCTTGGGATTGCACGACTTT
CTAGAGCGCATGCGTCAACCCTCCGCCGCAGATTTCGTCAAATCCATCAA
GAGTTTCATTGTTTCATTTTCAAACAATGCTCCTGATCCAGAAAGGGACA
GTGCTGCAGTGCAGTCATTCCTTGCCAATATGGAAGCAGCTTTCAGGGCG
CATCCTCTTTGGGCTGGTTGTTCAGAGGAGGAGCTGGACAGTGCTGGTGA
AGGACTGGAGAAGTATGTGATGACAAAGTTATTTACTCGTGTATTTGCTT
CAATTCCCGATGATGTTAAAACTGATGAACAGCTTTCAGAGAAGATAGCT
TTGGTTCAGCAATTTGTTCGTCCTGAAAATTTGGATATCAAGGCATCCTT
TCAGAATGAAACATCATGGCTGCTTGCACAGAAAGAGCTACAAAAGATAA
ATATGTACAAGGCTCCAAGAGACAAGCTTGTGTGTATTCTCAACTGCTGC
AAGGTCATCAATAATTTACTGCTTAATGCTTCTATAGCTTTAAATGAGAA
CCCCCCTGGAGCTGATGAATTTCTTCCCGTCCTAATTTACGTTACTATCA
AGGCGAATCCTCCACAACTGCACTCAAATCTATTGTATATACAAAGATAC
AGGCGTCAATCCCGATTAGTTGGAGAAGCAGCCTATTTTTTCACTAACAT
GCTCTCTGCAGAGTCTTTCATCTCTAACATTGATGCACAAGCCCTGTCAA
TGGAGGAATCTGAGTTTGAAAGAATATGGAATCTGCTCAAGCCCTTCTAT
CTGGTCTTTCAGCTGATATGGATGGTCTGTCTAATCTAAATGATGAAAGT
GAAAGTCCAATTTCTGTAAAACAACTTTAACAATCGAAACATCCAGGAGT
GAATTCTTCCAAAGAAAAAAACAATTTTACACTGGTCCAAATTTTCTTAA
TTAAATTTTTTAAAGAAAGGAAAAATTTGCCAAAAAATCAGAACCCAAAA
CAAAAATTTCTTTCCCCTCCGGAATTGTAATAAAAGGGGGCCACTTTTCC
TTTTTTAAGAAAAAAAAAGCGCCCCCCAACTTCTTTTGGAAAATCTATCT
TTTTTTTTTGGCCCACGT
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