DY262718

Overview
NameDY262718
Unique NameDY262718
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10622 contig Ccv1_Contig10622:10..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY262718 vs. ExPASy Swiss-Prot
Match: GYAR_PYRKO (Glyoxylate reductase OS=Pyrococcus kodakaraensis GN=gyaR PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13
Identity = 46/141 (32.62%), Postives = 67/141 (47.52%), Query Frame = 1
Query:  283 IVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHGA-----YPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVLIV 681
            IV     G D++D++E  RRGI VTN  +  ++  AD+               D F R+G W   G      + LG  + GK +GIVG G IG  VA+R   FG  I Y SR +KP         + ++  L  +SD +++
Sbjct:   70 IVANYAVGYDNIDVEEATRRGIYVTNTPDVLTDATADFAWTLLLATARRLIEADHFTRSGEWKRRGIAWHPRWFLGYDVYGKTIGIVGFGRIGQAVARRARGFGMRILYYSRSRKPEAEKELGAEFRSLEDLLRESDFVVL 210          
BLAST of DY262718 vs. ExPASy Swiss-Prot
Match: GYAR_PYRHO (Glyoxylate reductase OS=Pyrococcus horikoshii GN=gyaR PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.648e-13
Identity = 47/141 (33.33%), Postives = 67/141 (47.52%), Query Frame = 1
Query:  283 IVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHGA-----YPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYAN---VSGLAADSDVLIV 681
            IV     G D++D++E  +RGI VTN  +  ++  AD                DRFVR+G W   G      + LG  + GK +GI+GLG IG  +AKR   F   I Y SR +K  V     A    +  L  +SD +++
Sbjct:   70 IVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVL 210          
BLAST of DY262718 vs. ExPASy Swiss-Prot
Match: GYAR_THEGJ (Glyoxylate reductase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=gyaR PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12
Identity = 44/116 (37.93%), Postives = 57/116 (49.14%), Query Frame = 1
Query:  283 IVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHGA--YPL---GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKP 615
            IV     G D+VD++E  RRGI VTN  +  +   AD+               D F R+G W   G   +PL   G  + GK +GI+G G IG  VA+R   FG  I Y SR +KP
Sbjct:   70 IVANYAVGYDNVDVEEATRRGIYVTNTPDVLTNATADFAWTLLLATARRLIEADSFTRSGEWKRKGIAWHPLMFLGHDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKP 185          
BLAST of DY262718 vs. ExPASy Swiss-Prot
Match: GYAR_THELI (Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.475e-12
Identity = 48/140 (34.29%), Postives = 66/140 (47.14%), Query Frame = 1
Query:  280 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWP--DHGAYPL---GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPF---YANVSGLAADSDVL 675
            +I+     G D++D++E  +RGI VTN     ++  AD                D FVR+G W   + G +PL   G  L GK +GIVG G IG  +AKR   FG  I Y SR +KP         Y +   L  +SD +
Sbjct:   69 KIIAQYAVGYDNIDIEEATKRGIYVTNTPGVLTDATADLAFALLLAVARRIVEADAFVRSGEWKKSEVGWHPLMFLGYGLKGKTLGIVGFGRIGQALAKRAKGFGMKIIYYSRTRKPEAEEEIGAEYVDFETLLKESDFI 208          
BLAST of DY262718 vs. ExPASy Swiss-Prot
Match: GYAR_THEON (Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.516e-12
Identity = 44/142 (30.99%), Postives = 68/142 (47.89%), Query Frame = 1
Query:  280 EIVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHGA--YPL---GSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYAN---VSGLAADSDVLIV 681
            +IV     G D++D++E  + G+ +TN  +  +   AD                D+FVR+G W   G   +PL   G  + G+ +GIVG G IG  +A+R   FG  I Y SR +KP V     A    +  L  +SD +++
Sbjct:   69 KIVANYAVGYDNIDIEEATKMGVYITNTPDVLTNATADMAWVLLLATARRLIEADKFVRSGEWKKRGVAWHPLMFLGYDVYGRTIGIVGFGRIGQAIARRAKGFGMRILYNSRTRKPEVEKELGAEFMPLDELLKESDFVVL 210          
BLAST of DY262718 vs. ExPASy Swiss-Prot
Match: GYAR_PYRAB (Glyoxylate reductase OS=Pyrococcus abyssi GN=gyaR PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.321e-12
Identity = 45/141 (31.91%), Postives = 65/141 (46.10%), Query Frame = 1
Query:  283 IVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPDHGA-----YPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKKPGVSYPFYAN---VSGLAADSDVLIV 681
            IV     G D++D++E  +RGI VTN     ++  AD                D+F R+G W   G      + LG  + GK +GI+G G IG  +AKR   F   I Y SR +KP V     A    +  L  +SD +++
Sbjct:   71 IVANYAVGYDNIDVEEATKRGIYVTNTPGVLTDATADLAFALLLATARHLVKGDKFTRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGFGRIGQAIAKRARGFDMRILYYSRTRKPEVEKELNAEFKPLDELLRESDFVVL 211          
BLAST of DY262718 vs. ExPASy Swiss-Prot
Match: GYAR_PYRFU (Glyoxylate reductase OS=Pyrococcus furiosus GN=gyaR PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 42/115 (36.52%), Postives = 56/115 (48.70%), Query Frame = 1
Query:  283 IVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPD-----HGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSRKKK 612
            IV     G D++D++E  RRGI VTN  +  +   AD+               D+FVR+G W       H  + LG  L GK +GIVG G IG  +A+R   F   I Y SR +K
Sbjct:   70 IVANYAVGYDNIDVEEATRRGIYVTNTPDVLTNATADHAFALLLATARHVVKGDKFVRSGEWKRKGIAWHPKWFLGYELYGKTIGIVGFGRIGQAIARRAKGFNMRILYYSRTRK 184          
BLAST of DY262718 vs. ExPASy Swiss-Prot
Match: GYAR_KORCO (Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8) GN=gyaR PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 43/123 (34.96%), Postives = 59/123 (47.97%), Query Frame = 1
Query:  283 IVVGSTAGIDHVDLQECRRRGILVTNAGNAFSEDGADYXXXXXXXXXXXXSSIDRFVRNGLWPD--HGAYPLGSTLGGKRVGIVGLGSIGSEVAKRLVPFGCSIAYTSR------KKKPGVSY 627
            IV     G D++D++E  +RGI VTN     +E  AD+               DR+VR G W    H    LG  + G+ +GIVG+G IG+ VA+R   FG  I Y         +K+ GV Y
Sbjct:   70 IVAQYAVGYDNIDVKEATKRGIYVTNTPGVLTETTADFAFALLMAAARRVVEADRYVREGKWKVAWHPMMMLGYDVYGRTLGIVGMGRIGAAVARRAKGFGMRILYYDSIRREDFEKELGVEY 192          
The following BLAST results are available for this feature:
BLAST of DY262718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
GYAR_PYRKO2.972e-1332.62Glyoxylate reductase OS=Pyrococcus kodakaraensis G... [more]
GYAR_PYRHO8.648e-1333.33Glyoxylate reductase OS=Pyrococcus horikoshii GN=g... [more]
GYAR_THEGJ1.129e-1237.93Glyoxylate reductase OS=Thermococcus gammatolerans... [more]
GYAR_THELI1.475e-1234.29Glyoxylate reductase OS=Thermococcus litoralis GN=... [more]
GYAR_THEON2.516e-1230.99Glyoxylate reductase OS=Thermococcus onnurineus (s... [more]
GYAR_PYRAB7.321e-1231.91Glyoxylate reductase OS=Pyrococcus abyssi GN=gyaR ... [more]
GYAR_PYRFU9.562e-1236.52Glyoxylate reductase OS=Pyrococcus furiosus GN=gya... [more]
GYAR_KORCO4.745e-1134.96Glyoxylate reductase OS=Korarchaeum cryptofilum (s... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA100DA04RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262718 ID=DY262718; Name=DY262718; organism=Citrus clementina; type=EST; length=684bp
TTTTAATCACTGAAGCAAAGAAAAAATTTGAAGAAAAAAAACCGAATCGT
GACGATGCCTACAGAAGAGGAGCGCCCGGTTGTTTTAATCCACCGTATCC
CATCCCTCAAGCAACCATTAGCCAGTCTCAGCGAGCGCTTCACTCTCCTC
GACCCGCTCCTCCATTCAGCCGATTCGACTCACTCCTTCCTCTCCCGCCA
CGCCAGCTCCGTACGCGCCATTCTCTGCTTGGGCCCCTCTCCCCTCACCT
CCGACACCCTCTCCCTCCTCCCGGCGTTGGAAATCGTCGTGGGGTCCACC
GCAGGCATCGACCATGTTGACCTGCAGGAGTGCCGCCGACGCGGCATTCT
TGTGACTAATGCTGGTAACGCCTTCTCTGAGGACGGTGCTGATTATGTGG
TCGGTTTGTTGGTTGATGTTCTCAGGAGGGTTTCCAGCATTGATCGGTTT
GTTCGGAACGGGTTGTGGCCCGATCATGGGGCCTACCCACTTGGGTCAAC
GTTGGGAGGAAAGCGAGTTGGGATTGTGGGGTTGGGTAGCATAGGCTCTG
AAGTTGCAAAAAGGCTTGTGCCCTTCGGCTGTAGCATTGCTTACACATCA
AGAAAGAAAAAGCCAGGTGTTTCGTATCCTTTTTATGCAAATGTTTCTGG
CCTTGCTGCTGATAGTGATGTCCTCATTGTATGT
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