DY262742

Overview
NameDY262742
Unique NameDY262742
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length776
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLNA1_VITVI (Glutamine synthetase cytosolic isozyme 1 OS=Vitis vinifera GN=GS1-1 PE=2 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.411e-81
Identity = 144/177 (81.36%), Postives = 154/177 (87.01%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNGRRITGKHETAEIKTF 533
            IEQEYTLLQK+VKWP+                   ADKAWGRDIVD+HYKACLYAGINISGINGEVMPGQWE+QVGP+VGISAGD+LWV+RYILERITEIAGVVLSFDPKPIQGDWNGAGAH NYSTKSMRNDGGFEVIKKAIEKLGLRH EHIAAYGEGN RR+TG+HETA+I TF
Sbjct:  128 IEQEYTLLQKEVKWPIGWPVGGFPGPQGPYYCGIGADKAWGRDIVDAHYKACLYAGINISGINGEVMPGQWEYQVGPSVGISAGDELWVSRYILERITEIAGVVLSFDPKPIQGDWNGAGAHTNYSTKSMRNDGGFEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTF 304          
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLNA1_ALNGL (Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE=2 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.561e-80
Identity = 142/178 (79.78%), Postives = 153/178 (85.96%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNGRRITGKHETAEIKTFQ 536
            IEQEYTLLQKDVKWPL                   ADKAWGRDIVD+HYKACLYAGINISGINGEVMPGQWEFQVGP+VGISAGD++W ARYILERITEIAGVVLS DPKPIQGDWNGAGAH NYSTKSMRN+GG+E+IKKAIEKLGLRH EHIAAYGEGN RR+TG+HETA+I TF+
Sbjct:  128 IEQEYTLLQKDVKWPLGWPVGGYPGPQGPYYCGIGADKAWGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEVWAARYILERITEIAGVVLSLDPKPIQGDWNGAGAHTNYSTKSMRNNGGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFK 305          
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLNA2_VITVI (Glutamine synthetase cytosolic isozyme 2 OS=Vitis vinifera GN=GS1-2 PE=2 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 3.477e-80
Identity = 143/177 (80.79%), Postives = 152/177 (85.88%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNGRRITGKHETAEIKTF 533
            IEQEYTLLQ  VKWP+                   ADKA+GRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGD+LWVARYILERITEIAGVV+SFDPKPIQGDWNGAGAH NYSTKSMRNDGG+E+IKKAIEKLGLRH EHIAAYGEGN RR+TG+HETA+I TF
Sbjct:  128 IEQEYTLLQNSVKWPIGWPVGGYPGPQGPYYCGIGADKAFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILERITEIAGVVVSFDPKPIQGDWNGAGAHTNYSTKSMRNDGGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTF 304          
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLNA_VIGAC (Glutamine synthetase nodule isozyme OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 3.844e-79
Identity = 142/177 (80.23%), Postives = 151/177 (85.31%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNGRRITGKHETAEIKTF 533
            IEQEYTLLQKDV WPL                   ADKA+GRDIVD+HYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGD+LWVARYILERITEIAGVVLSFDPKPI+GDWNGAGAH NYSTK+MRNDGG+EVIK AIEKLG RH EHIAAYGEGN RR+TG+HETA+I TF
Sbjct:  128 IEQEYTLLQKDVNWPLGWPVGGFPGPQGPYYCGAGADKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILERITEIAGVVLSFDPKPIKGDWNGAGAHTNYSTKTMRNDGGYEVIKSAIEKLGKRHKEHIAAYGEGNERRLTGRHETADINTF 304          
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLNA3_MEDSA (Glutamine synthetase nodule isozyme OS=Medicago sativa GN=GS1 PE=2 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 7.249e-78
Identity = 138/177 (77.97%), Postives = 148/177 (83.62%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNGRRITGKHETAEIKTF 533
            IEQEYTLLQKD  WPL                   ADKA+GRDIVD+HYKACLYAGINISGINGEVMPGQWEFQVGP+VGISAGD++W ARYILERITEIAGVV+SFDPKPI GDWNGAGAH NYSTKSMR DGG+E+IKKAIEKLGLRH EHIAAYGEGN RR+TGKHET +I TF
Sbjct:  128 IEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGADKAYGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWAARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMREDGGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETTDINTF 304          
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLNA1_MEDSA (Glutamine synthetase cytosolic isozyme OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 9.468e-78
Identity = 138/177 (77.97%), Postives = 150/177 (84.75%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNGRRITGKHETAEIKTF 533
            IEQEYTLLQKD+ WPL                   ADKA+GRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP+VGISAGD++WVARYILERITE+AGVVLSFDPKPI+GDWNGAGAH NYSTKSMR DGG+EVI KAIEKLG +H EHIAAYGEGN RR+TG+HETA+I TF
Sbjct:  128 IEQEYTLLQKDINWPLGWPVGGFPGPQGPYYCGAGADKAFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWVARYILERITEVAGVVLSFDPKPIKGDWNGAGAHTNYSTKSMREDGGYEVILKAIEKLGKKHKEHIAAYGEGNERRLTGRHETADINTF 304          
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLNA1_LOTJA (Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2)

HSP 1 Score: 290.041 bits (741), Expect = 9.468e-78
Identity = 137/177 (77.40%), Postives = 152/177 (85.88%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNGRRITGKHETAEIKTF 533
            IEQEYTLLQK+V WP+                   ADKA+GRDIVD+HYKACLYAG+NISGINGEVMPGQWEFQVGP+VGISAGD++WVARYILERITEIAGVVLSFDPKPI+GDWNGAGAH NYSTK+MR DGG+EVIKKAI+KLGLRH EHIAAYGEGN RR+TG+HETA+I TF
Sbjct:  128 IEQEYTLLQKEVNWPVGWPIGGFPGPQGPYYCGIGADKAFGRDIVDAHYKACLYAGVNISGINGEVMPGQWEFQVGPSVGISAGDEVWVARYILERITEIAGVVLSFDPKPIKGDWNGAGAHTNYSTKTMREDGGYEVIKKAIDKLGLRHKEHIAAYGEGNERRLTGRHETADINTF 304          
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLN11_ORYSJ (Glutamine synthetase cytosolic isozyme 1-1 OS=Oryza sativa subsp. japonica GN=GLN1-1 PE=1 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 9.468e-78
Identity = 138/177 (77.97%), Postives = 150/177 (84.75%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNGRRITGKHETAEIKTF 533
            IEQEYTLLQKD+ WPL                   ADK++GRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP+VGISAGDQ+WVARYILERITEIAGVV+SFDPKPI GDWNGAGAH NYSTKSMRNDGG+E+IK AIEKL LRH EHI+AYGEGN RR+TG+HETA+I TF
Sbjct:  128 IEQEYTLLQKDINWPLGWPVGGFPGPQGPYYCGIGADKSFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDQVWVARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMRNDGGYEIIKSAIEKLKLRHKEHISAYGEGNERRLTGRHETADINTF 304          
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLNA_LUPLU (Glutamine synthetase nodule isozyme OS=Lupinus luteus PE=3 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.237e-77
Identity = 139/177 (78.53%), Postives = 150/177 (84.75%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNGRRITGKHETAEIKTF 533
            IEQEYTLLQKD+ WP+                   A+KA+GRDIVDSHYKACLYAGINISGIN EVMPGQWEFQVGP+VGISAGD+LWVARYILERITEIAGVVLS DPKPI GDWNGAGAH NYSTKSMRNDGG+EVIKKAIEKLG RH+EHIAAYGEGN RR+TG+HETA+I TF
Sbjct:  128 IEQEYTLLQKDIHWPIGWPLGGFPGPQGPYYCGTGAEKAFGRDIVDSHYKACLYAGINISGINAEVMPGQWEFQVGPSVGISAGDELWVARYILERITEIAGVVLSLDPKPIPGDWNGAGAHTNYSTKSMRNDGGYEVIKKAIEKLGKRHNEHIAAYGEGNERRLTGRHETADISTF 304          
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLN14_ARATH (Glutamine synthetase cytosolic isozyme 1-4 OS=Arabidopsis thaliana GN=GLN1-4 PE=1 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.615e-77
Identity = 138/177 (77.97%), Postives = 148/177 (83.62%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNGRRITGKHETAEIKTF 533
            IEQEYTLLQKD+KWP+                   ADKA+GRDIVDSHYKACLYAGIN+SG NGEVMPGQWEFQVGP VGI+A DQ+WVARYILERITE+AGVVLS DPKPI GDWNGAGAH NYSTKSMR DGG+EVIKKAIEKLGLRH EHIAAYGEGN RR+TGKHETA+I TF
Sbjct:  128 IEQEYTLLQKDIKWPVGWPVGGFPGPQGPYYCGVGADKAFGRDIVDSHYKACLYAGINVSGTNGEVMPGQWEFQVGPTVGIAAADQVWVARYILERITELAGVVLSLDPKPIPGDWNGAGAHTNYSTKSMREDGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETADINTF 304          
The following BLAST results are available for this feature:
BLAST of DY262742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA1_VITVI1.411e-8181.36Glutamine synthetase cytosolic isozyme 1 OS=Vitis ... [more]
GLNA1_ALNGL1.561e-8079.78Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE... [more]
GLNA2_VITVI3.477e-8080.79Glutamine synthetase cytosolic isozyme 2 OS=Vitis ... [more]
GLNA_VIGAC3.844e-7980.23Glutamine synthetase nodule isozyme OS=Vigna aconi... [more]
GLNA3_MEDSA7.249e-7877.97Glutamine synthetase nodule isozyme OS=Medicago sa... [more]
GLNA1_MEDSA9.468e-7877.97Glutamine synthetase cytosolic isozyme OS=Medicago... [more]
GLNA1_LOTJA9.468e-7877.40Glutamine synthetase cytosolic isozyme OS=Lotus ja... [more]
GLN11_ORYSJ9.468e-7877.97Glutamine synthetase cytosolic isozyme 1-1 OS=Oryz... [more]
GLNA_LUPLU1.237e-7778.53Glutamine synthetase nodule isozyme OS=Lupinus lut... [more]
GLN14_ARATH1.615e-7777.97Glutamine synthetase cytosolic isozyme 1-4 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100DC09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262742 ID=DY262742; Name=DY262742; organism=Citrus clementina; type=EST; length=776bp
GTATTGAGCAGGAATACACCTTACTGCAGAAGGATGTTAAATGGCCTCTT
GGCTGGCCCATCGGTGGTTATCCTGGGCCTCAGGGACCATACTACTGTGG
TGTTGGTGCTGACAAAGCTTGGGGGCGTGACATTGTGGACTCCCATTACA
AGGCCTGTCTATATGCAGGAATCAACATCAGTGGCATCAATGGAGAAGTC
ATGCCGGGGCAGTGGGAGTTCCAAGTTGGTCCCGCTGTTGGAATTTCTGC
TGGAGATCAGTTGTGGGTTGCCCGCTATATTTTAGAGAGGATTACAGAGA
TTGCTGGAGTTGTGCTTTCTTTCGATCCCAAGCCAATTCAGGGTGACTGG
AATGGAGCTGGTGCTCACGCAAATTACAGCACCAAGTCGATGAGGAACGA
TGGAGGCTTTGAGGTTATTAAGAAAGCAATTGAGAAACTTGGACTGAGGC
ACAGTGAGCACATTGCCGCATATGGTGAAGGCAATGGACGCCGAATCACT
GGGAAACATGAAACAGCTGAAATCAAAACTTTCCAAGGGGGGGGTTGCTA
ACGGGGGGGCATCAACCGGGGTGGGACAAAACCAAAAAAAAAAAAGGAAA
GGGTACCTTTGAGGAAGGGGAACCGGGTTTCAACCGGGATCCCTATGTTG
GCCCCCCCCCGAAATGGCAAAACCCCCTTTTCGGGGAGAAACCTGAAGGG
GCCCCTCACCACACCCTTTAAAAAATTTTTTTTTGGTGCTGGGGGGCTTT
TTATTACGGGGATCCCCAGAATCCCC
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