DY262748

Overview
NameDY262748
Unique NameDY262748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1330
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262748 vs. ExPASy Swiss-Prot
Match: AROD3_ARATH (Arogenate dehydratase 3, chloroplastic OS=Arabidopsis thaliana GN=ADT3 PE=1 SV=1)

HSP 1 Score: 369.007 bits (946), Expect = 3.546e-101
Identity = 197/302 (65.23%), Postives = 228/302 (75.50%), Query Frame = 1
Query:  157 PLIRPRGSRSRCRQFNRVQCV-YRSDSVHFPNGIGYSRADWQSSCAILSSNVVSQQQS-------GDKPAEHIAAVNGHKTSI---DLNLVPIEHXXXXXXXXXXXKPQLPPQKPLTITDLSPAPMHGSQLRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEYLTRVISHPQALSQCEHTLTKLGLNVATEAVNDTAGAAEYFAPHDLRDTAAKPSATPAEIDGMQVLKEGKQEESSNVT 1029
            P   P    +  R+ + + C   RSDS      I  S +DWQSSCAILSS V SQ+QS           + H++AVNGH       DLNLVP  +              +  +KPL+I+DLSPAPMHGS LRVAYQGVPGAYSEAAAGKAYPNC+AIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCL+ALPGVRKE+LTRVISHPQ L+QCEHTLTKLGLNVA EAV+DTAGAAE+ A +++RDTAA  SA  AEI G+++L++G Q+++SNVT
Sbjct:    6 PSHTPATVTTAARRRHVIHCAGKRSDSF----SINSSSSDWQSSCAILSSKVNSQEQSESLSSNSNGSSSYHVSAVNGHNNGAGVSDLNLVPFNN-----------NQSIQSKKPLSISDLSPAPMHGSNLRVAYQGVPGAYSEAAAGKAYPNCQAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLIALPGVRKEFLTRVISHPQGLAQCEHTLTKLGLNVAREAVDDTAGAAEFIAANNIRDTAAIASARAAEIYGLEILEDGIQDDASNVT 292          
BLAST of DY262748 vs. ExPASy Swiss-Prot
Match: AROD6_ARATH (Arogenate dehydratase/prephenate dehydratase 6, chloroplastic OS=Arabidopsis thaliana GN=ADT6 PE=1 SV=1)

HSP 1 Score: 363.614 bits (932), Expect = 1.490e-99
Identity = 188/268 (70.15%), Postives = 217/268 (80.97%), Query Frame = 1
Query:  265 RADWQSSCAILSSNVVSQQQSGDKPAEHIAA----VNGHKTSI----DLNLVPIEHXXXXXXXXXXXKPQLP-----PQKPLTITDLSPAPMHGSQLRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEYLTRVISHPQALSQCEHTLTKLGLNVATEAVNDTAGAAEYFAPHDLRDTAAKPSATPAEIDGMQVLKEGKQEESSNVT 1029
            R++WQSSCAIL+S V+SQ++S   P   ++     +NGH ++      +NLVPIE             P +P     P KPL++TDLSPAPMHGS LRVAYQGVPGAYSEAAAGKAYPNC+AIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKE+LTRVISHPQ L+QCEHTLTKLGLNVA EAV+DTAGAAE+ A ++LRDTAA  SA  AEI G+++L++G Q++ SNVT
Sbjct:   28 RSEWQSSCAILTSKVISQEESESLPVPPVSGGVDHLNGHNSAAARVPGMNLVPIEKSDS--------NPLVPQHRHNPLKPLSMTDLSPAPMHGSNLRVAYQGVPGAYSEAAAGKAYPNCQAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEFLTRVISHPQGLAQCEHTLTKLGLNVAREAVDDTAGAAEFIASNNLRDTAAIASARAAEIYGLEILEDGIQDDVSNVT 287          
BLAST of DY262748 vs. ExPASy Swiss-Prot
Match: AROD4_ARATH (Arogenate dehydratase 4, chloroplastic OS=Arabidopsis thaliana GN=ADT4 PE=1 SV=1)

HSP 1 Score: 357.836 bits (917), Expect = 8.175e-98
Identity = 185/275 (67.27%), Postives = 215/275 (78.18%), Query Frame = 1
Query:  208 VQCVYRSDSVHFPNGIGYSRADWQSSCAILSSNVVSQQQSGDKPAEHIAAVNGHKT-SIDLNLVPIEHXXXXXXXXXXXKPQLPPQKPLTITDLSPAPMHGSQLRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEYLTRVISHPQALSQCEHTLTKLGLNVATEAVNDTAGAAEYFAPHDLRDTAAKPSATPAEIDGMQVLKEGKQEESSNVT 1029
            V C YRS+S  FPNG+  SR+DWQSSCAILSS V S + +G   A+ IAAVNGH   S++L LV +E              +L P +PLTITDLSPAP+HGS LRVAYQGVPGAYSEAAAGKAYPNC+AIPCDQF+VAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQ+PVHHCLLALPGVR + ++RVISHPQAL+Q EH+L  L  + A EA +DTA AAEY + +DL DTAA  SA  AE+  +Q+L +G Q++  NVT
Sbjct:   33 VTCGYRSESFSFPNGVSVSRSDWQSSCAILSSKVASVENTGGL-ADKIAAVNGHTNGSVNLGLVAVESTNG----------KLAPAQPLTITDLSPAPLHGSSLRVAYQGVPGAYSEAAAGKAYPNCDAIPCDQFDVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQIPVHHCLLALPGVRTDCVSRVISHPQALAQTEHSLDVLTPHAAREAFHDTAAAAEYISANDLHDTAAVASARAAELYNLQILADGIQDDPGNVT 296          
BLAST of DY262748 vs. ExPASy Swiss-Prot
Match: AROD5_ARATH (Arogenate dehydratase 5, chloroplastic OS=Arabidopsis thaliana GN=ADT5 PE=1 SV=1)

HSP 1 Score: 356.295 bits (913), Expect = 2.379e-97
Identity = 193/288 (67.01%), Postives = 219/288 (76.04%), Query Frame = 1
Query:  208 VQCVYRSDSVHFPNGIGYSRADWQSSCAILSSNVVSQQQSGDKPAEHIAAVNGHKT-SIDLNLVPIEHXXXXXXXXXXXKPQLPPQKPLTITDLSPAPMHGSQLRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEYLTRVISHPQALSQCEHTLTKLGLNVATEAVNDTAGAAEYFAPHDLRDTAAKPSATPAEIDGMQVLKEGKQEESSNVTSVREFLAGDPKNP 1068
            V+C YRS+S  FPNG+G SRADWQSSCAIL+S VVS + S       +A VNGH   S+DL+LVP +            KP L   +PLTITDLSPAP HGS LRVAYQGVPGAYSEAAAGKAYPN EAIPCDQF+VAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQ+PVHHCLLALPGVR + +TRVISHPQAL+Q E +L KL    A EA +DTA AAEY A ++L DTAA  SA  AE+ G+Q+L +G Q+++ NVT     LA DP  P
Sbjct:   37 VRCSYRSESFSFPNGVGSSRADWQSSCAILASKVVSAENSSS-----VAVVNGHSNGSVDLSLVPSKSQHNG-------KPGLI--QPLTITDLSPAPSHGSTLRVAYQGVPGAYSEAAAGKAYPNSEAIPCDQFDVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQIPVHHCLLALPGVRTDCITRVISHPQALAQTEGSLNKLTPKAAIEAFHDTAAAAEYIAANNLHDTAAVASARAAELYGLQILADGIQDDAGNVTRFL-MLARDPIIP 309          
BLAST of DY262748 vs. ExPASy Swiss-Prot
Match: AROD2_ARATH (Arogenate dehydratase/prephenate dehydratase 2, chloroplastic OS=Arabidopsis thaliana GN=ADT2 PE=1 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 3.587e-61
Identity = 122/195 (62.56%), Postives = 150/195 (76.92%), Query Frame = 1
Query:  445 PQLPPQKPLTITDLSPAPMHGSQLRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEYLTRVISHPQALSQCEHTLTKLGLNVATEAVNDTAGAAEYFAPHDLRDTAAKPSATPAEIDGMQVLKEGKQEESSNVT 1029
            P LP  KPL+   L+ +  +GS++RVAYQGV GAYSE+AA KAYPNCEA+PC++F+ AF+AVE W+ DRAVLP+ENSLGGSIHRNYDLLLRH LHIVGEV+L V HCLLA  GV  E L RV+SHPQAL+QCE+TLTKLGL    EAV+DTAGAA+  A  +L D AA  S   A+I G+ ++ +  Q++  NVT
Sbjct:   78 PLLP--KPLSSNQLTESVSNGSRVRVAYQGVRGAYSESAAEKAYPNCEAVPCEEFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHNLHIVGEVKLAVRHCLLANHGVNIEDLRRVLSHPQALAQCENTLTKLGL--VREAVDDTAGAAKQIAFENLNDAAAVASEKAAKIYGLNIVAKDIQDDCDNVT 268          
BLAST of DY262748 vs. ExPASy Swiss-Prot
Match: AROD1_ARATH (Arogenate dehydratase/prephenate dehydratase 1, chloroplastic OS=Arabidopsis thaliana GN=ADT1 PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 8.558e-55
Identity = 110/202 (54.46%), Postives = 141/202 (69.80%), Query Frame = 1
Query:  463 KPLTITDLSPAPMHGSQLRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEYLTRVISHPQALSQCEHTLTKLGLNVATEAVNDTAGAAEYFAPHDLRDTAAKPSATPAEIDGMQVLKEGKQEESSNVTSVREFLAGDPKNP 1068
            KPLT   L  +    S++R+++QG+PGAYSE AA KA+PNCE +PC+QFE AFQAVELW+ D+AVLP+ENS+GGSIHRNYDLLLRHRLHIV EV LPV+HCLL +PGV+KE +  V+SHPQAL QC ++L  LG  +   +  DTA AA+  +     D  A  S   A I G+ +L E  Q++ +NVT     LA +P  P
Sbjct:   89 KPLTANSLYSSDGDDSKVRISFQGIPGAYSETAALKAFPNCETVPCEQFEAAFQAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVQEVHLPVNHCLLGVPGVKKEDIKCVLSHPQALDQCVNSLNNLG--IQRISAKDTATAAQTVSSSGKIDVGAIASVRAANIYGLDILAENIQDDVNNVTRFL-ILAREPMIP 287          
BLAST of DY262748 vs. ExPASy Swiss-Prot
Match: PHEA_NEIG1 (P-protein OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=pheA PE=4 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.291e-18
Identity = 73/208 (35.10%), Postives = 97/208 (46.63%), Query Frame = 1
Query:  514 LRVAYQGVPGAYSEAAAGKAYPNC-EAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEYLTRVISHPQALSQCEHTLTKLGLNVATEAVNDTAGAAEYFAPHDLRDTAAKPSATPAEIDGMQVLKEGKQEESSNVTSVREFLAGDPKNPPQRIGRSKTKFRVSPKKRGEKV 1134
            L +AY G  G +++ AA K + +    + C   +  F+ VE   AD  V PVENS  GS+ R  DLL    L   GEV L +HH LL       E + +V SH QAL+QC   L +   N    AV+  A AA   A  D    AA    T AEI G+ ++ E  ++E +N T  R  + G  +      G  KT   VS   R   V
Sbjct:   90 LTIAYLGPQGTFTQQAAIKHFGHAAHTMACPTIDDCFKQVETRQADYLVAPVENSTEGSVGRTLDLLAVTALQACGEVVLRIHHNLLRKNNGSTEGIAKVFSHAQALAQCNDWLGRRLPNAERIAVSSNAEAARLVAESDDGTVAAIAGRTAAEIYGLDMVAECIEDEPNNTT--RFLVMGHHETGAS--GSDKTSLAVSAPNRAGAV 293          
BLAST of DY262748 vs. ExPASy Swiss-Prot
Match: PHEA_BUCAP (P-protein OS=Buchnera aphidicola subsp. Schizaphis graminum GN=pheA PE=4 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.202e-18
Identity = 55/173 (31.79%), Postives = 88/173 (50.87%), Query Frame = 1
Query:  523 AYQGVPGAYSEAAAGKA----YPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEYLTRVISHPQALSQCEHTLTKLGLNVATEAVNDTAGAAEYFAPHDLRDTAAKPSATPAEIDGMQVLKEGKQEESSNVT 1029
            ++ G  G+YS  AA +     +  C    C  F    Q+VE    D AVLP+ENS  G I+  +D+L +  L I+GE+ + ++HCLLA+  +    +  V SHPQ   QC + + K   N   +  N TA A +    +++   AA  S   ++I G++VL +    +  N+T
Sbjct:  107 SFLGPKGSYSHIAASQYAEQNFKTCIENACLSFNEVIQSVENNQTDYAVLPIENSCSGFINEIFDILKKTNLFIIGEINISINHCLLAIKKIELNKIKAVYSHPQPFQQCSYFIKKFP-NWKIQYTNSTADAMKKIVKYNITTNAALGSELGSKIYGLKVLYKNLANKKKNIT 278          
BLAST of DY262748 vs. ExPASy Swiss-Prot
Match: PHEA_PSEST (P-protein OS=Pseudomonas stutzeri GN=pheA PE=4 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.152e-17
Identity = 68/204 (33.33%), Postives = 101/204 (49.51%), Query Frame = 1
Query:  514 LRVAYQGVPGAYSEAAAGKAYPNCE-AIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEYLTRVISHPQALSQCEHTLTKLGLNVATEAVNDTAGAAEYFAPHDLRDTAAKPSATPAEIDGMQVLKEGKQEESSNVTSVREFLAGDPKNPPQRIGRSKTKFRVSPKKR 1122
            LRVAY G  G +S+AAA K + +   + P    +  F+ V     +  V+PVENS  G+++   D  L H + I GEV+L +HH LL     + + +TR+ SH Q+L+QC   L     NV   AV+  A AA+        ++AA      A++ G+  L E  + E   V S R  + G  + PP   G  KT   VS + +
Sbjct:   95 LRVAYLGPEGTFSQAAALKHFGHSVISKPMAAIDEVFREVVAGAVNFGVVPVENSTEGAVNHTLDSFLEHDIVICGEVELRIHHHLLVGETTKTDRITRIYSHAQSLAQCRKWLDAHYPNVERVAVSSNADAAKRVKSE--WNSAAIAGDMAAQLYGLSKLAE--KIEDRPVNSTRFLIIGSQEVPP--TGDDKTSIIVSMRNK 292          
BLAST of DY262748 vs. ExPASy Swiss-Prot
Match: PHEA_ENTAG (P-protein OS=Enterobacter agglomerans GN=pheA PE=4 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.152e-17
Identity = 59/180 (32.78%), Postives = 86/180 (47.78%), Query Frame = 1
Query:  502 HGSQLRVAYQGVPGAYSEAAA----GKAYPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEYLTRVISHPQALSQCEHTLTKLGLNVATEAVNDTAGAAEYFAPHDLRDTAAKPSATPAEIDGMQVLKEGKQEESSNVT 1029
            H    R+A+ G  G+YS  AA     + + +     C +F    + VE  +AD AV+P+EN+  GSI+  YDLL +  L IVGE+ LP+ HC+L       + +  V SHPQ   QC   + +   +   E    TA A E  A  +    AA  S    E+  +QVL+     +  N T
Sbjct:  100 HAHAARIAFLGPKGSYSHLAARNYASRHFDSMVECGCLKFHDIIKQVENGVADYAVMPIENTSSGSINDVYDLLQQTSLSIVGELTLPIDHCVLVNGPTDLQQIETVYSHPQPFQQCSQFINRFP-HWKIEYTESTAAAMEKVAALNSPKVAALGSEAGGELYQLQVLERNLANQQQNHT 278          
The following BLAST results are available for this feature:
BLAST of DY262748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
AROD3_ARATH3.546e-10165.23Arogenate dehydratase 3, chloroplastic OS=Arabidop... [more]
AROD6_ARATH1.490e-9970.15Arogenate dehydratase/prephenate dehydratase 6, ch... [more]
AROD4_ARATH8.175e-9867.27Arogenate dehydratase 4, chloroplastic OS=Arabidop... [more]
AROD5_ARATH2.379e-9767.01Arogenate dehydratase 5, chloroplastic OS=Arabidop... [more]
AROD2_ARATH3.587e-6162.56Arogenate dehydratase/prephenate dehydratase 2, ch... [more]
AROD1_ARATH8.558e-5554.46Arogenate dehydratase/prephenate dehydratase 1, ch... [more]
PHEA_NEIG11.291e-1835.10P-protein OS=Neisseria gonorrhoeae (strain ATCC 70... [more]
PHEA_BUCAP2.202e-1831.79P-protein OS=Buchnera aphidicola subsp. Schizaphis... [more]
PHEA_PSEST4.152e-1733.33P-protein OS=Pseudomonas stutzeri GN=pheA PE=4 SV=... [more]
PHEA_ENTAG4.152e-1732.78P-protein OS=Enterobacter agglomerans GN=pheA PE=4... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100DD03RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262748 ID=DY262748; Name=DY262748; organism=Citrus clementina; type=EST; length=1330bp
AGAACACCAAGCGTACTCTCAAATCTTCATCTTTCTTTCTCCCACCTACC
ACCTCCTGTTCTTATTCTTCTCCGTTTGGTTTTTTTGTTTCCCCTTTTTT
TTTTCAAATAAAGATAAAAATAAAAGAAAAAAATGAATACTCTATCGTCT
CCTTCCCCCCTTATCCGTCCCCGAGGTTCTCGTTCCCGTTGTCGTCAGTT
CAACCGGGTTCAATGTGTGTACAGATCCGACTCGGTTCACTTCCCAAACG
GCATCGGTTACAGCCGCGCTGACTGGCAAAGCTCCTGCGCTATCCTCTCC
AGCAACGTCGTCTCTCAACAGCAGTCCGGTGATAAACCCGCCGAGCACAT
CGCCGCTGTCAACGGTCACAAGACTTCCATTGACCTCAACCTCGTCCCTA
TCGAGCACGCCAACAGCGCCGCCGCCACCGCTAGCAACAACAAGCCTCAG
CTTCCGCCGCAAAAGCCGTTGACAATCACCGACCTCTCGCCGGCTCCTAT
GCACGGCTCACAACTCCGGGTCGCCTACCAGGGCGTCCCCGGCGCCTACT
CCGAGGCCGCTGCCGGCAAAGCCTATCCGAACTGCGAGGCGATTCCTTGC
GACCAGTTCGAAGTTGCTTTCCAGGCTGTCGAGCTCTGGATCGCGGACCG
CGCCGTCTTGCCTGTTGAAAACTCGCTAGGCGGATCTATCCACCGGAACT
ACGACCTCCTCCTCCGCCACCGGCTTCACATCGTCGGAGAAGTTCAGCTC
CCGGTTCACCACTGTCTCTTGGCCTTGCCTGGCGTCCGCAAAGAGTACCT
CACGCGCGTGATTTCACATCCGCAGGCGCTCTCCCAGTGCGAGCACACTC
TGACGAAACTAGGGCTCAACGTCGCAACGGAGGCCGTCAACGACACGGCC
GGAGCGGCCGAGTACTTCGCCCCCCACGACCTCCGCGACACAGCGGCAAA
ACCCTCCGCAACCCCCGCGGAAATTGACGGAATGCAAGTCCTGAAAGAAG
GGAAACAAGAAGAATCAAGCAACGTGACTTCGGTTCGTGAATTTTTGGCC
GGTGACCCGAAAAACCCCCCGCAACGAATCGGCCGTTCAAAAACAAAATT
CCGTGTTTCCCCCAAAAAAAGGGGGGAAAAAGTGTGTTTTTTTTAAGGTG
TTTTTCCGGCTTTTCCCTTTTTTGAAAAAAAAAAAATTTTTAAAAAAAAA
AAAAAAAATAACAAAGGCCCCCCCACCAAAAAACCTCTCCCCAATTCAGG
GCCTGGGTTTTTAAAAAATAGCCAAAAAGTGGGGGGGGAAGAACCGCTCA
AAAAAAACCTCTTTCTCTTCAATAATTATA
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