DY262761

Overview
NameDY262761
Unique NameDY262761
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1319
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262761 vs. ExPASy Swiss-Prot
Match: SNUT2_MOUSE (U4/U6.U5 tri-snRNP-associated protein 2 OS=Mus musculus GN=Usp39 PE=2 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 4.093e-61
Identity = 107/176 (60.80%), Postives = 132/176 (75.00%), Query Frame = 3
Query:  465 RDCPYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLDDIRHVLNPRFTKEQVDQLDKNKLWSRALDGSDYLPGMVGLNNIKETDFVNVTIQSLMRVTPLKNFFLIPENYQHCKSPLVILFGDLLGRFG 992
            R CPYLDT+NR VLDFDFEK CS+SLS++N YACLVCGKY+QGRG KSHAY HS++  HHV++NL T K YCLPD YEI D SL+DI +VL P FTK+Q+  LDK    SRA DG+ YLPG+VGLNNIK  D+ N  +Q+L  V PL+N+FL  +NY++ K P   +   L+ RFG
Sbjct:  102 RHCPYLDTINRSVLDFDFEKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFG 277          

HSP 2 Score: 26.9498 bits (58), Expect = 4.093e-61
Identity = 11/28 (39.29%), Postives = 15/28 (53.57%), Query Frame = 2
Query:  965 FWRLTRKIWHVQNFKDGSPQHEFFQPFI 1048
            F  L RK+W+ +NFK     HE  Q  +
Sbjct:  276 FGELMRKLWNPRNFKAHVSPHEMLQAVV 303          
BLAST of DY262761 vs. ExPASy Swiss-Prot
Match: SNUT2_HUMAN (U4/U6.U5 tri-snRNP-associated protein 2 OS=Homo sapiens GN=USP39 PE=1 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 4.093e-61
Identity = 107/176 (60.80%), Postives = 132/176 (75.00%), Query Frame = 3
Query:  465 RDCPYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLDDIRHVLNPRFTKEQVDQLDKNKLWSRALDGSDYLPGMVGLNNIKETDFVNVTIQSLMRVTPLKNFFLIPENYQHCKSPLVILFGDLLGRFG 992
            R CPYLDT+NR VLDFDFEK CS+SLS++N YACLVCGKY+QGRG KSHAY HS++  HHV++NL T K YCLPD YEI D SL+DI +VL P FTK+Q+  LDK    SRA DG+ YLPG+VGLNNIK  D+ N  +Q+L  V PL+N+FL  +NY++ K P   +   L+ RFG
Sbjct:  103 RHCPYLDTINRSVLDFDFEKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFG 278          

HSP 2 Score: 26.9498 bits (58), Expect = 4.093e-61
Identity = 11/28 (39.29%), Postives = 15/28 (53.57%), Query Frame = 2
Query:  965 FWRLTRKIWHVQNFKDGSPQHEFFQPFI 1048
            F  L RK+W+ +NFK     HE  Q  +
Sbjct:  277 FGELMRKLWNPRNFKAHVSPHEMLQAVV 304          
BLAST of DY262761 vs. ExPASy Swiss-Prot
Match: SNUT2_PONAB (U4/U6.U5 tri-snRNP-associated protein 2 OS=Pongo abelii GN=USP39 PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.418e-60
Identity = 106/176 (60.23%), Postives = 131/176 (74.43%), Query Frame = 3
Query:  465 RDCPYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLDDIRHVLNPRFTKEQVDQLDKNKLWSRALDGSDYLPGMVGLNNIKETDFVNVTIQSLMRVTPLKNFFLIPENYQHCKSPLVILFGDLLGRFG 992
            R CPYLDT+NR VLDFDFEK CS+S S++N YACLVCGKY+QGRG KSHAY HS++  HHV++NL T K YCLPD YEI D SL+DI +VL P FTK+Q+  LDK    SRA DG+ YLPG+VGLNNIK  D+ N  +Q+L  V PL+N+FL  +NY++ K P   +   L+ RFG
Sbjct:  103 RHCPYLDTINRSVLDFDFEKLCSISPSHVNAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFG 278          

HSP 2 Score: 26.9498 bits (58), Expect = 3.418e-60
Identity = 11/28 (39.29%), Postives = 15/28 (53.57%), Query Frame = 2
Query:  965 FWRLTRKIWHVQNFKDGSPQHEFFQPFI 1048
            F  L RK+W+ +NFK     HE  Q  +
Sbjct:  277 FGELMRKLWNPRNFKAHVSPHEMLQAVV 304          
BLAST of DY262761 vs. ExPASy Swiss-Prot
Match: UBP10_SCHPO (Probable mRNA-splicing protein ubp10 OS=Schizosaccharomyces pombe GN=ubp10 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.767e-44
Identity = 83/156 (53.21%), Postives = 110/156 (70.51%), Query Frame = 3
Query:  477 YLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLDDIRHVLNPRFTKEQVDQLDKNKLWSRALDGSDYLPGMVGLNNIKETDFVNVTIQSLMRVTPLKNFFLIPENYQHC 944
            YLDT+NR++LDFDFEK CSVSL+NL+VYACLVCG+Y+QGRG  SHAY H+L   HHV++N  T K Y LP+ Y++   +L DI +V+ P FTK +V +LD     S  L    Y+PG VG+NNIK  D+ NV I  L  V P +N+FL+ +N+ +C
Sbjct:   60 YLDTINRKLLDFDFEKVCSVSLTNLSVYACLVCGRYFQGRGPSSHAYFHALTENHHVFVNCSTLKFYVLPESYQVESSALQDIAYVMRPTFTKLEVQRLDHTPQLSYDLMLKPYVPGFVGMNNIKNNDYFNVVIHMLAHVKPFRNYFLL-KNFDNC 214          
BLAST of DY262761 vs. ExPASy Swiss-Prot
Match: SAD1_YEAST (Pre-mRNA-splicing factor SAD1 OS=Saccharomyces cerevisiae GN=SAD1 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.316e-23
Identity = 56/153 (36.60%), Postives = 85/153 (55.56%), Query Frame = 3
Query:  477 YLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPS----LDDIRHVLNPRFTKEQVDQLDKNKLWSRALDGSDYLPGMVGLNNIKETDFVNVTIQSLMRVTPLKNFFLI 923
            YL+TV R+ LDFD EK C ++LS LNVY CLVCG YYQGR +KS A+ HS++  HHV++NL + K Y LP   +I        L+ I+    P +  + ++   +       L    YL G +G  N    D+ +  +  +  + P+++ FL+
Sbjct:   31 YLETVVREKLDFDSEKICCITLSPLNVYCCLVCGHYYQGRHEKSPAFIHSIDENHHVFLNLTSLKFYMLPQNVQILHDGEVQLLNSIKFAAYPTYCPKDLEDFPRQCF---DLSNRTYLNGFIGFTNAATYDYAHSVLLLISHMVPVRDHFLL 180          
The following BLAST results are available for this feature:
BLAST of DY262761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SNUT2_MOUSE4.093e-6160.80U4/U6.U5 tri-snRNP-associated protein 2 OS=Mus mus... [more]
SNUT2_HUMAN4.093e-6160.80U4/U6.U5 tri-snRNP-associated protein 2 OS=Homo sa... [more]
SNUT2_PONAB3.418e-6060.23U4/U6.U5 tri-snRNP-associated protein 2 OS=Pongo a... [more]
UBP10_SCHPO1.767e-4453.21Probable mRNA-splicing protein ubp10 OS=Schizosacc... [more]
SAD1_YEAST1.316e-2336.60Pre-mRNA-splicing factor SAD1 OS=Saccharomyces cer... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA100DE04RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262761 ID=DY262761; Name=DY262761; organism=Citrus clementina; type=EST; length=1319bp
TTGAAATTTTTAGCAAGCACTAGCTCTTTTCGCGAACTCGTCGATTACCT
TCAGAGGCTCACGACTTCGATTTGCCGGCCGTCGTTGTCGTCCTTCAGCC
GCAGTCGGTCTCGCCGTCCTAGGAAACAGTAAAATTGGAGAAAAAAAGGG
TAAACGAGATGACAAAGAAGAGGAAAAATAATGGTAGTGCTGATGAAGAC
AGGCACGTGAAGAGTGTGAAAGTGGTGGAGCAGTCGTCTCCGTCACCTCC
TCGTTTGGGTTTTGAGAACCCTCTTTTGCCGTTAGCTAATACATATGATG
ATGACGATGAGGAGGAGGAATATGGTGGCCGAGGAGATAGTGGAGCAAAA
GTTGGACAAAATGGTCGTACGGGTGAAGATGATGATGAAGATAAGGATGA
GGATGAGGATGACTTGGCTAATGGATATGGTCAAGGGCAGCGAAGCAGAC
TTGTTGAAGTGCGGAGGGATTGCCCTTATCTTGATACTGTTAATCGCCAG
GTTTTGGATTTTGATTTTGAGAAGTTCTGCTCTGTTTCTCTTTCAAACTT
AAATGTGTATGCGTGTTTGGTTTGTGGTAAGTATTACCAAGGAAGAGGGC
AGAAATCTCATGCATATACTCATAGCTTGGAAGCAGGACACCATGTTTAC
ATCAATCTTCGAACAGAGAAAGTTTATTGCCTTCCTGATGGTTACGAAAT
TAATGACCCTTCACTGGATGATATTCGGCATGTTCTAAATCCAAGGTTTA
CCAAGGAGCAAGTAGATCAGCTTGACAAAAATAAGCTATGGTCTAGGGCT
TTGGATGGTTCGGACTATCTTCCTGGAATGGTGGGTCTGAATAACATCAA
GGAGACTGATTTTGTGAATGTCACAATTCAATCTCTAATGAGAGTTACTC
CATTAAAGAACTTCTTCCTTATCCCTGAAAATTACCAGCACTGCAAATCT
CCACTGGTTATCCTTTTTGGAGACTTACTAGGAAGATTTGGCATGTTCAA
AATTTTAAGGACGGGTCACCCCAACATGAATTTTTCCAGCCTTTTATAAA
ACGCCGTAAAAAACGGGTTCAAAAAGGTGGACAGGCCAAACCCGGGTGAA
ATTATGGGCTGGGCCTTTTAAACCCCCGGGCACTAAAAATTTAAAAAAAA
AAAAAAAAAAAAATACAGCCACTATTAATAAAAGGGGTTTTCTGGGGGGA
GGGGGGGGGAAAGTGGGGAGGGGAAAAATACTCAAAAAAAAAACACCTCT
TTGGTGGGGGGGAGGGACCACAAACATATTATGTGAGAAAAAGAAGGGGG
GTTCTCACAGGAGGGGGGG
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