DY262761
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY262761 vs. ExPASy Swiss-Prot
Match: SNUT2_MOUSE (U4/U6.U5 tri-snRNP-associated protein 2 OS=Mus musculus GN=Usp39 PE=2 SV=2) HSP 1 Score: 230.72 bits (587), Expect = 4.093e-61 Identity = 107/176 (60.80%), Postives = 132/176 (75.00%), Query Frame = 3 Query: 465 RDCPYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLDDIRHVLNPRFTKEQVDQLDKNKLWSRALDGSDYLPGMVGLNNIKETDFVNVTIQSLMRVTPLKNFFLIPENYQHCKSPLVILFGDLLGRFG 992 R CPYLDT+NR VLDFDFEK CS+SLS++N YACLVCGKY+QGRG KSHAY HS++ HHV++NL T K YCLPD YEI D SL+DI +VL P FTK+Q+ LDK SRA DG+ YLPG+VGLNNIK D+ N +Q+L V PL+N+FL +NY++ K P + L+ RFG Sbjct: 102 RHCPYLDTINRSVLDFDFEKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFG 277 HSP 2 Score: 26.9498 bits (58), Expect = 4.093e-61 Identity = 11/28 (39.29%), Postives = 15/28 (53.57%), Query Frame = 2 Query: 965 FWRLTRKIWHVQNFKDGSPQHEFFQPFI 1048 F L RK+W+ +NFK HE Q + Sbjct: 276 FGELMRKLWNPRNFKAHVSPHEMLQAVV 303
BLAST of DY262761 vs. ExPASy Swiss-Prot
Match: SNUT2_HUMAN (U4/U6.U5 tri-snRNP-associated protein 2 OS=Homo sapiens GN=USP39 PE=1 SV=2) HSP 1 Score: 230.72 bits (587), Expect = 4.093e-61 Identity = 107/176 (60.80%), Postives = 132/176 (75.00%), Query Frame = 3 Query: 465 RDCPYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLDDIRHVLNPRFTKEQVDQLDKNKLWSRALDGSDYLPGMVGLNNIKETDFVNVTIQSLMRVTPLKNFFLIPENYQHCKSPLVILFGDLLGRFG 992 R CPYLDT+NR VLDFDFEK CS+SLS++N YACLVCGKY+QGRG KSHAY HS++ HHV++NL T K YCLPD YEI D SL+DI +VL P FTK+Q+ LDK SRA DG+ YLPG+VGLNNIK D+ N +Q+L V PL+N+FL +NY++ K P + L+ RFG Sbjct: 103 RHCPYLDTINRSVLDFDFEKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFG 278 HSP 2 Score: 26.9498 bits (58), Expect = 4.093e-61 Identity = 11/28 (39.29%), Postives = 15/28 (53.57%), Query Frame = 2 Query: 965 FWRLTRKIWHVQNFKDGSPQHEFFQPFI 1048 F L RK+W+ +NFK HE Q + Sbjct: 277 FGELMRKLWNPRNFKAHVSPHEMLQAVV 304
BLAST of DY262761 vs. ExPASy Swiss-Prot
Match: SNUT2_PONAB (U4/U6.U5 tri-snRNP-associated protein 2 OS=Pongo abelii GN=USP39 PE=2 SV=1) HSP 1 Score: 227.639 bits (579), Expect = 3.418e-60 Identity = 106/176 (60.23%), Postives = 131/176 (74.43%), Query Frame = 3 Query: 465 RDCPYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLDDIRHVLNPRFTKEQVDQLDKNKLWSRALDGSDYLPGMVGLNNIKETDFVNVTIQSLMRVTPLKNFFLIPENYQHCKSPLVILFGDLLGRFG 992 R CPYLDT+NR VLDFDFEK CS+S S++N YACLVCGKY+QGRG KSHAY HS++ HHV++NL T K YCLPD YEI D SL+DI +VL P FTK+Q+ LDK SRA DG+ YLPG+VGLNNIK D+ N +Q+L V PL+N+FL +NY++ K P + L+ RFG Sbjct: 103 RHCPYLDTINRSVLDFDFEKLCSISPSHVNAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFG 278 HSP 2 Score: 26.9498 bits (58), Expect = 3.418e-60 Identity = 11/28 (39.29%), Postives = 15/28 (53.57%), Query Frame = 2 Query: 965 FWRLTRKIWHVQNFKDGSPQHEFFQPFI 1048 F L RK+W+ +NFK HE Q + Sbjct: 277 FGELMRKLWNPRNFKAHVSPHEMLQAVV 304
BLAST of DY262761 vs. ExPASy Swiss-Prot
Match: UBP10_SCHPO (Probable mRNA-splicing protein ubp10 OS=Schizosaccharomyces pombe GN=ubp10 PE=2 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 1.767e-44 Identity = 83/156 (53.21%), Postives = 110/156 (70.51%), Query Frame = 3 Query: 477 YLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLDDIRHVLNPRFTKEQVDQLDKNKLWSRALDGSDYLPGMVGLNNIKETDFVNVTIQSLMRVTPLKNFFLIPENYQHC 944 YLDT+NR++LDFDFEK CSVSL+NL+VYACLVCG+Y+QGRG SHAY H+L HHV++N T K Y LP+ Y++ +L DI +V+ P FTK +V +LD S L Y+PG VG+NNIK D+ NV I L V P +N+FL+ +N+ +C Sbjct: 60 YLDTINRKLLDFDFEKVCSVSLTNLSVYACLVCGRYFQGRGPSSHAYFHALTENHHVFVNCSTLKFYVLPESYQVESSALQDIAYVMRPTFTKLEVQRLDHTPQLSYDLMLKPYVPGFVGMNNIKNNDYFNVVIHMLAHVKPFRNYFLL-KNFDNC 214
BLAST of DY262761 vs. ExPASy Swiss-Prot
Match: SAD1_YEAST (Pre-mRNA-splicing factor SAD1 OS=Saccharomyces cerevisiae GN=SAD1 PE=1 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 1.316e-23 Identity = 56/153 (36.60%), Postives = 85/153 (55.56%), Query Frame = 3 Query: 477 YLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPS----LDDIRHVLNPRFTKEQVDQLDKNKLWSRALDGSDYLPGMVGLNNIKETDFVNVTIQSLMRVTPLKNFFLI 923 YL+TV R+ LDFD EK C ++LS LNVY CLVCG YYQGR +KS A+ HS++ HHV++NL + K Y LP +I L+ I+ P + + ++ + L YL G +G N D+ + + + + P+++ FL+ Sbjct: 31 YLETVVREKLDFDSEKICCITLSPLNVYCCLVCGHYYQGRHEKSPAFIHSIDENHHVFLNLTSLKFYMLPQNVQILHDGEVQLLNSIKFAAYPTYCPKDLEDFPRQCF---DLSNRTYLNGFIGFTNAATYDYAHSVLLLISHMVPVRDHFLL 180 The following BLAST results are available for this feature:
BLAST of DY262761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DY262761 ID=DY262761; Name=DY262761; organism=Citrus clementina; type=EST; length=1319bpback to top |