DY262807

Overview
NameDY262807
Unique NameDY262807
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1292
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262807 vs. ExPASy Swiss-Prot
Match: UTP6_SCHPO (U3 small nucleolar RNA-associated protein 6 OS=Schizosaccharomyces pombe GN=utp6 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.011e-28
Identity = 74/210 (35.24%), Postives = 111/210 (52.86%), Query Frame = 1
Query:   94 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKN-GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVAL 720
            MA+ VQY +E+ V EL+DL  + +F R EI+ I+K RR FE +L R      D+L+YI+YE  L+ LR  R K          R+            G  ++L ++  A  +F GD+ LW  Y+ + ++ K    + K+    ++ HP    +W+ A   EF  N NV+AARALM   LR+   +  +W  Y R+EL+Y+ KL AR   L
Sbjct:    1 MAEKVQYYMEQSVPELEDLLEKNIFNRDEINNIIKTRRVFEEKLARRQVKLNDFLSYIQYEINLETLRAKRHK----------RLNITGKITISDYAGPRKVLFLFLRATNKFFGDVTLWLDYIHYAQKIKAVNIVGKICVAALQKHPNNAELWVVACDHEFSINANVSAARALMNRALRLNQENPVIWAAYFRLELSYMTKLFARSQIL 200          
BLAST of DY262807 vs. ExPASy Swiss-Prot
Match: UTP6_HUMAN (U3 small nucleolar RNA-associated protein 6 homolog OS=Homo sapiens GN=UTP6 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 2.252e-28
Identity = 68/207 (32.85%), Postives = 113/207 (54.59%), Query Frame = 1
Query:   94 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELWFKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARK 711
            MA+++Q R+E  + EL+ LER GLF+  EI  I+K+    EY+++R +  K+D++ Y++YE  L  L + R+  IG    ++                V R+  +++ A  ++K D++LW  Y+ FC++     R+ KV + ++  H   P +WI AA WE +  L+  +AR L    LR  P   +L+ EY RMEL +  KL+  K
Sbjct:    1 MAEIIQERIEDRLPELEQLERIGLFSHAEIKAIIKKASDLEYKIQRRTLFKEDFINYVQYEINLLELIQRRRTRIGYSFKKDE----------IENSIVHRVQGVFQRASAKWKDDVQLWLSYVAFCKKWATKTRLSKVFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALRFHPECPKLYKEYFRMELMHAEKLRKEK 197          
BLAST of DY262807 vs. ExPASy Swiss-Prot
Match: UTP6_MOUSE (U3 small nucleolar RNA-associated protein 6 homolog OS=Mus musculus GN=Utp6 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 5.548e-27
Identity = 66/208 (31.73%), Postives = 111/208 (53.37%), Query Frame = 1
Query:   94 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYE-SQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELWFKYMEFCRQ-RKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARK 711
            MA+++Q R+E  + EL+ LER GLF+  EI  I+K+    EY++ R + LK+D++ Y++YE + L+ ++R           R  R+             V R+  ++  A  ++K D++LW  Y+ FC++      + K+ + ++  H   P +WI AA WE +  L+  +AR L    LR  P   +L+ EY RMEL +  KL+  K
Sbjct:    1 MAEIIQERIEDRIPELEQLERIGLFSHAEIKAIIKKASDLEYKIHRRTLLKEDFINYVQYEINLLELIQR-----------RRARIKYSFKKDEIEYSMVHRVQGVFGRASAKWKDDVQLWLSYIVFCKKWGTKTHLSKIFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALRFHPECPKLYQEYFRMELMHAEKLRKEK 197          
BLAST of DY262807 vs. ExPASy Swiss-Prot
Match: UTP6_YEAST (U3 small nucleolar RNA-associated protein 6 OS=Saccharomyces cerevisiae GN=UTP6 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 2.753e-26
Identity = 67/209 (32.06%), Postives = 109/209 (52.15%), Query Frame = 1
Query:  109 QYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKN----GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALG 723
            +Y LE+ + E+DDL  +GLFT++E+S I+K+R  FE+RL        DY+ YI YES ++ LR  R K I         +               RI  IY+    +F  D++ W  Y+ + + R N     ++  +  Q+++ HP    +WI  A +E++ + N  + R + QNGLR  P   +LW EY++ EL ++ KL  R+  +G
Sbjct:    5 RYYLEQCIPEMDDLVEKGLFTKNEVSLIMKKRTDFEHRLNSRGSSINDYIKYINYESNVNKLRAKRCKRI---------LQVKKTNSLSDWSIQQRIGFIYQRGTNKFPQDLKFWAMYLNYMKARGNQTSYKKIHNIYNQLLKLHPTNVDIWISCAKYEYEVHANFKSCRNIFQNGLRFNPDVPKLWYEYVKFELNFITKLINRRKVMG 204          
BLAST of DY262807 vs. ExPASy Swiss-Prot
Match: UTP6_DICDI (U3 small nucleolar RNA-associated protein 6 homolog OS=Dictyostelium discoideum GN=utp6 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.386e-14
Identity = 53/204 (25.98%), Postives = 97/204 (47.55%), Query Frame = 1
Query:  100 DVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVXXXXXXXXXXXXGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKN----GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKL 699
            D V + ++++++E   L   G+ ++ E  +I+K+R   E ++   +  K D+L YI+YE +LD L   R K+   +     R              +   + ++  A  +F  D  LW   +    +R +    GR+  +    +   P+   +W  AA +EF+ N N+  AR L+Q G++   T + LW  +  MELTY++ L
Sbjct:    2 DRVNFSIDQLLEETSKLVSLGIISKQECKDIMKKREYHEIKIFNRNSHKSDFLTYIKYELELDRLFHKRGKAKNIEFDYRLR------------SALRHAIILFGSATKKFPKDEALWINALNIRMKRASKEGTGRLFSIALSNL---PRSAKLWKLAATFEFEVNKNIQNARNLIQAGIQFNKTDKSLWHYFFLMELTYISLL 190          
The following BLAST results are available for this feature:
BLAST of DY262807 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
UTP6_SCHPO1.011e-2835.24U3 small nucleolar RNA-associated protein 6 OS=Sch... [more]
UTP6_HUMAN2.252e-2832.85U3 small nucleolar RNA-associated protein 6 homolo... [more]
UTP6_MOUSE5.548e-2731.73U3 small nucleolar RNA-associated protein 6 homolo... [more]
UTP6_YEAST2.753e-2632.06U3 small nucleolar RNA-associated protein 6 OS=Sac... [more]
UTP6_DICDI5.386e-1425.98U3 small nucleolar RNA-associated protein 6 homolo... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA10AA08RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262807 ID=DY262807; Name=DY262807; organism=Citrus clementina; type=EST; length=1292bp
CTTACGTTACGGAGCGGACGGTGCCATTCCCTCCCATCTCTAACTTCCTA
CCAGTTCACCGAGTCAACTCACTTTCTCGCGAAAAGCTTAGCCATGGCTG
ACGTGGTACAGTACCGGCTCGAGCGCATGGTGGACGAGCTGGACGACCTG
GAACGGCGTGGCCTTTTCACTCGCCACGAAATCAGCGAAATAGTTAAGCA
GCGACGCAAGTTCGAGTACCGGCTGAAGAGACCGAGTCCATTGAAGCAAG
ATTACTTGGCGTACATCGAGTACGAGTCTCAGCTCGACGCTCTACGCCGC
CTCAGGAAGAAATCGATTGGGCGTGACGAGGGGAGGGAGAGGCGCGTGTC
GAAGAAAATGAAAAAGTCAGTTTCAGATTTTTCCGGAGTCGCGAGGATTC
TGGAGATTTATAGGTTGGCCGTGATGAGGTTTAAAGGAGACATTGAGTTG
TGGTTTAAATATATGGAGTTCTGTAGGCAGCGGAAAAACGGAAGAATGAA
GAAGGTCCTGGCTCAAGTGATTAGATTTCATCCGAAGGTCCCAGGAGTGT
GGATCTATGCTGCAGCTTGGGAATTTGACCATAATTTAAATGTCACTGCT
GCTCGTGCTCTTATGCAGAATGGTTTGAGAGTCTGCCCAACTTCAGAAGA
ACTTTGGGTGGAGTATCTCCGCATGGAACTCACATATCTTAATAAATTAA
AGGCTAGAAAGGTTGCTCTTGGAGAGGACAAGGGAACTTTAGTTCGTGAT
CATAGAGATGCTGATGAAAAACGGTGGATAAATGAAAACAAAGATTTATT
TATGCCCCTAGATGGAGAAGTAGAAAATACTGATGGATCACAACCCGAAA
ATATGGAGTCTCAAAAAAGTGTAGATTTGTTTAGGGAACAGGGCTTGAGA
GTTCTTCAAACTATCTACGGTGGAGCTGGTGAAGCTCTCCCCTTCTATTT
TAACCTGAAACAACAATCCTTTGAAAAAATAAAAACCACAAATTTGGCCC
AATCCAATGAAATGCTTGAACAGAATATTAAGGGATTGCCAAAAAACTTT
TTAATTTGTTCCAAAAATTTGGGACTGGCTTGGCAAAATTAAAAAGAACG
GATTCTGGAAACAAGGGGGGGGACATTGGAAAAAATTTTAACCCTTTCTC
AAATCCAAAAAAACATTTTCCGGGGTTTTTAAAAAGGCCTTTTTATAAAA
ATGGGGCCCTCTTCCAAAATTATATACTTTTTTTTTCTTTTTATAAAACA
AATTTTTTTAGTAAGAAGAGAATTGAAATTTTTTCCCTCCCC
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