DY262825

Overview
NameDY262825
Unique NameDY262825
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1340
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262825_ssr812 microsatellite DY262825_ssr812:812..829. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4556 contig Ccv1_Contig4556:92..1440. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY262825 vs. ExPASy Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 348.591 bits (893), Expect = 5.006e-95
Identity = 167/228 (73.25%), Postives = 192/228 (84.21%), Query Frame = 3
Query:   81 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPP 764
            +ERNQDAT YVG LD +V+E LLWELF+QAGPVVN ++PKDRVT  HQGYGFVEF SEEDADYAIK++NMIKLYGKPIRVNKAS   K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI+  PKIMRDPDTGNS+G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+KKD+KGERHG+ AER+LAA NP SQ  RPH LFA  PP          ++G  +PP
Sbjct:    7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPP 234          
BLAST of DY262825 vs. ExPASy Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 348.591 bits (893), Expect = 5.006e-95
Identity = 167/228 (73.25%), Postives = 192/228 (84.21%), Query Frame = 3
Query:   81 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPP 764
            +ERNQDAT YVG LD +V+E LLWELF+QAGPVVN ++PKDRVT  HQGYGFVEF SEEDADYAIK++NMIKLYGKPIRVNKAS   K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI+  PKIMRDPDTGNS+G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+KKD+KGERHG+ AER+LAA NP SQ  RPH LFA  PP          ++G  +PP
Sbjct:    7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPP 234          
BLAST of DY262825 vs. ExPASy Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 348.591 bits (893), Expect = 5.006e-95
Identity = 167/228 (73.25%), Postives = 192/228 (84.21%), Query Frame = 3
Query:   81 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPP 764
            +ERNQDAT YVG LD +V+E LLWELF+QAGPVVN ++PKDRVT  HQGYGFVEF SEEDADYAIK++NMIKLYGKPIRVNKAS   K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI+  PKIMRDPDTGNS+G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+KKD+KGERHG+ AER+LAA NP SQ  RPH LFA  PP          ++G  +PP
Sbjct:    7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPP 234          
BLAST of DY262825 vs. ExPASy Swiss-Prot
Match: SF3B4_CAEEL (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2)

HSP 1 Score: 319.316 bits (817), Expect = 3.252e-86
Identity = 161/248 (64.92%), Postives = 190/248 (76.61%), Query Frame = 3
Query:   84 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGP-----------PSLQNAPQANGTVGGPVPPRPYANGAASG 794
            ERNQDAT YVG LD +V+E +LWEL VQAGPVV+V +PKDRVT  HQG+GFVEF  EEDADYAIK+LNMIKLYGKPI+VNKAS  +K++DVGAN+F+GNLDP+VDEKLLYDTFSAFGVI+  PKIMRD D+G S+GF FI++ SFEASD A+EAMNGQ+LCNR ITVSYA+K+D+KGERHGT AER+LAA NP   K RPH +F+  P           P +  A  A+ T      P P    A SG
Sbjct:    8 ERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPLFPKDRPHQVFSDVPLGVPANTPLAMPGVHAAIAAHATGRPGYQPPPLMGMAQSG 255          
BLAST of DY262825 vs. ExPASy Swiss-Prot
Match: SAP49_SCHPO (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe GN=sap49 PE=2 SV=2)

HSP 1 Score: 254.603 bits (649), Expect = 9.837e-67
Identity = 132/256 (51.56%), Postives = 175/256 (68.36%), Query Frame = 3
Query:   84 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDK-KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAA-----------------------NNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPYAN 779
            +RNQDAT Y+GNLD +VT+ +L+EL +QAGPVVN+++P+DRV N H G+GF EF  E+D +YA ++LN +KL+GKPIRVN+ASQD+  +  +GANLF+GNLDP VDE++LYDTFSA G +V  P++ RD + G S+G+GF+SYDSFE +DAAIEAMN Q+L N+ ITVSYA+K++ KGERHG  AER LAA                         P+S  + P T+ A+  P + N P    T    VPP    N
Sbjct:    6 DRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARD-ENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGERHGDIAERKLAAAAKKNKVAVTPQSTLPPGFSPATPAPTSAANTPATIAATSIPPVPNVPLVGATTA--VPPLSIPN 258          
BLAST of DY262825 vs. ExPASy Swiss-Prot
Match: SF3B4_DICDI (Splicing factor 3B subunit 4 OS=Dictyostelium discoideum GN=sf3b4 PE=3 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 1.376e-60
Identity = 118/232 (50.86%), Postives = 164/232 (70.69%), Query Frame = 3
Query:   84 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPS-----SQKSRPHTLFASGPPSLQNAPQANGTVGGPVPP 764
            ERN +A   + +LDP VTE LL ELF+QA PVV V++PKD++T  H G  +VEF+S  DA+YA+KV+  ++L+ K I++ K ++DK  +D+GANLFIGNLD DVDE++L+DTFS FG I+  PK+MRD + G S+GF FI++DSFEASDAAIEAMN Q+LCN+ I+V+YA KKD+  ERHG+ AERI+AA+  +      Q+ +  +  ++   S     Q       P+PP
Sbjct:    8 ERNHEACLLIRDLDPMVTESLLMELFIQAAPVVKVFIPKDKLTQQHSGRAYVEFQSSSDAEYALKVMKFVRLFNKEIKIKKENKDK--VDIGANLFIGNLDADVDERILHDTFSRFGTIIFTPKVMRD-ENGVSKGFAFINFDSFEASDAAIEAMNSQFLCNKPISVTYARKKDS-NERHGSSAERIIAASRNTGYLNQQQQQQSSSTSSTSTISTSTPQQQQQQQSQPLPP 235          
BLAST of DY262825 vs. ExPASy Swiss-Prot
Match: PABP_SCHPO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 1.938e-30
Identity = 71/165 (43.03%), Postives = 108/165 (65.45%), Query Frame = 3
Query:   99 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 590
            A+ YVG LDP VTE +L+ELF   GPV ++ V +D VT    GY +V F + ED + A+  LN   + G+P R+  + +D     +G  N+FI NLDP +D K L+DTFSAFG I+ + K+  D + GN++G+GF+ +DS E+++AAIE +NG  L ++++ V +
Sbjct:   80 ASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKIL-SCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGH 242          

HSP 2 Score: 101.293 bits (251), Expect = 1.392e-20
Identity = 78/250 (31.20%), Postives = 123/250 (49.20%), Query Frame = 3
Query:  108 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ-----------------DKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQ---NAPQANGTVGGPVPPRPYANGAASGP 797
            Y+ NLD ++TE+   +LF Q G + ++ + KD+  +  +G+GFV + + E A  A+  LN  +  GK + V +A +                 +K +   G NLFI NL  +VD++ L   FSAFG I T+ KIM D + G S+GFGF+ Y + E ++ A+  MN + L  + + V+ A +K+    R      +I A N    Q+       A+G P++Q     P   G  G P+P      G    P
Sbjct:  264 YIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTI-TSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEV---RRSQLEAQIQARNQFRLQQ---QVAAAAGIPAVQYGATGPLIYGPGGYPIPAAVNGRGMPMVP 504          
BLAST of DY262825 vs. ExPASy Swiss-Prot
Match: HSH49_YEAST (Protein HSH49 OS=Saccharomyces cerevisiae GN=HSH49 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.305e-30
Identity = 69/195 (35.38%), Postives = 117/195 (60.00%), Query Frame = 3
Query:  102 TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVL-NMIKLYGKPIRVNKASQDKKSLDVGAN-----------LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE-RHGTPAERIL 647
            T YVGN+DP++T+E L+ELF+Q  PV+ +  PKD+V   +QGY F+EF ++ DA YAIK++ N ++LY + I+V + +    + ++ +N           LFI NL   +D   L   F+ FG ++  P+I     +       ++ ++ FE +D AI+++N Q + N +ITV YA+K++ KG  ++G   +R+L
Sbjct:   10 TVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDAQYAIKIMNNTVRLYDRLIKVRQVTNSTGTTNLPSNISKDMILPIAKLFIKNLADSIDSDQLVKIFNKFGKLIREPEIFY--LSNGKLKCAYVYFEDFEKADLAIKSLNNQLVANNRITVDYAFKENGKGNAKYGDDVDRLL 202          
BLAST of DY262825 vs. ExPASy Swiss-Prot
Match: PABP_YARLI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia lipolytica GN=PAB1 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.142e-29
Identity = 70/168 (41.67%), Postives = 109/168 (64.88%), Query Frame = 3
Query:   84 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 584
            ++  +A+ YVG LDP VTE +L+E+F   GPV +V V +D +T    GY +V F ++ D   A++ LN   +  +P R+  + +D      GA N++I NLDP +D K L+DTFSAFG I+ + KI  D + GNSRGFGF+ Y+S E++++AI+ +NG  L ++++ V
Sbjct:   41 DQGDNASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALEELNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQIL-SCKIATD-EFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFV 206          

HSP 2 Score: 73.1738 bits (178), Expect = 4.059e-12
Identity = 52/193 (26.94%), Postives = 91/193 (47.15%), Query Frame = 3
Query:   84 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDV-----------------GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 611
            ++N     ++ NL  ++TE    EL  + G   +V++  +       G+GFV+++  + A  AI  L+  +  G  +   +A +  +  D                  G NL+I NLD  +D+  L   F+  G I T+ K+M D + G S+GFGF+ Y S E +  A+  MN + +  + + V  A +KD +
Sbjct:  222 QKNSFTNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTND-EGKPTGFGFVDYKEHDVAVKAIDGLSETEFKGNKLFAGRAKKKYERADELRKQYEASRLEKLNKYQGVNLYIKNLDDTIDDDKLRAEFAPHGTI-TSAKVMVD-EAGKSKGFGFVCYSSPEEATKAVTEMNHRLVAGKPLYVVLAQRKDVR 411          
BLAST of DY262825 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 3.654e-29
Identity = 77/173 (44.51%), Postives = 109/173 (63.01%), Query Frame = 3
Query:   69 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 584
            G  +A +  + + YVG+LD  VT+  L++ F Q G VV V V +D VT    GYG+V F + +DA  AI+ LN I LYGKPIRV  + +D      GA N+FI NLD  +D K L+DTFS+FG IV + K+  D  +G S+G+GF+ Y + E++  AIE +NG  L ++Q+ V
Sbjct:   26 GGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIV-SCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196          

HSP 2 Score: 87.4261 bits (215), Expect = 2.080e-16
Identity = 68/249 (27.31%), Postives = 119/249 (47.79%), Query Frame = 3
Query:   78 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI---RVNKASQDKKSLDV--------------GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERIL-AANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRP 770
            +A + +    YV NL    T++ L   F + G + +  V KD      +G+GFV F + +DA  A++ LN  K   K     R  K S+ +  L V               +NL++ NLDP + ++ L + FS FG  VT+ K+MRDP+ G S+G GF+++ + E +  A+  ++G+ + ++ + V+ A +K+ +  R      ++   A  PS     P  ++  G P +             +PP+P
Sbjct:  208 TANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGT-VTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMP--VYPPGGPGIGQQMFYGQAPPAMIPPQP 451          

HSP 3 Score: 75.8702 bits (185), Expect = 6.262e-13
Identity = 50/183 (27.32%), Postives = 94/183 (51.37%), Query Frame = 3
Query:   78 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-----ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 611
            S  R+     ++ NLD  +  + L + F   G +V+  V  D  +   +GYGFV++ +EE A  AI+ LN + L  K + V    + ++           N+++ NL     +  L + F  +G I T+  +M+D + G S+GFGF+++++ + +  A+E++NG    +++  V  A KK  +
Sbjct:  117 SVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKI-TSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSER 296          
The following BLAST results are available for this feature:
BLAST of DY262825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
SF3B4_RAT5.006e-9573.25Splicing factor 3B subunit 4 OS=Rattus norvegicus ... [more]
SF3B4_MOUSE5.006e-9573.25Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf... [more]
SF3B4_HUMAN5.006e-9573.25Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF... [more]
SF3B4_CAEEL3.252e-8664.92Splicing factor 3B subunit 4 OS=Caenorhabditis ele... [more]
SAP49_SCHPO9.837e-6751.56Spliceosome-associated protein 49 OS=Schizosacchar... [more]
SF3B4_DICDI1.376e-6050.86Splicing factor 3B subunit 4 OS=Dictyostelium disc... [more]
PABP_SCHPO1.938e-3043.03Polyadenylate-binding protein, cytoplasmic and nuc... [more]
HSH49_YEAST3.305e-3035.38Protein HSH49 OS=Saccharomyces cerevisiae GN=HSH49... [more]
PABP_YARLI2.142e-2941.67Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP2_ARATH3.654e-2944.51Polyadenylate-binding protein 2 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10AC04RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262825 ID=DY262825; Name=DY262825; organism=Citrus clementina; type=EST; length=1340bp
AGAAGAAGTAATAACGAGTAAAAGGCATGACCACTCGAATCGCTCCTGGA
GTTGGGGCCAATTTGCTGGGCCAACACTCCGCCGAGAGAAATCAAGATGC
CACAGCTTATGTCGGCAATCTCGATCCCCAGGTTACTGAGGAGCTACTTT
GGGAGTTGTTTGTTCAAGCAGGTCCTGTTGTTAATGTGTATGTTCCAAAA
GATAGAGTGACAAACCTTCATCAAGGATACGGATTTGTAGAGTTCCGAAG
TGAGGAAGATGCTGATTATGCAATAAAGGTGCTGAATATGATAAAGCTTT
ATGGGAAGCCGATACGTGTGAATAAGGCATCCCAAGACAAAAAGAGCTTA
GATGTGGGGGCAAACCTTTTTATTGGAAACCTTGACCCAGATGTGGATGA
GAAACTACTATATGATACATTCAGTGCGTTTGGAGTCATTGTTACAAATC
CCAAGATTATGCGAGATCCTGACACTGGAAATTCTCGTGGTTTTGGTTTC
ATTAGCTATGATTCCTTTGAGGCATCCGATGCAGCTATTGAGGCAATGAA
TGGCCAATACCTTTGCAACCGTCAAATTACTGTCTCATATGCATATAAGA
AAGACACTAAAGGAGAGCGCCATGGTACTCCGGCAGAGAGAATTTTGGCG
GCAAACAATCCGAGTTCCCAGAAGAGTAGGCCCCACACTTTATTTGCGAG
TGGACCTCCATCACTACAGAATGCTCCTCAGGCCAATGGTACTGTTGGTG
GACCAGTGCCTCCACGCCCATATGCAAATGGTGCTGCTTCAGGCCCAATT
TCAGCTGTTCGACCACCACCACCACCACCACAAGCTGCAGCATTCCCACC
CATGCAAGTGGCTGGACAAGCCGCTTGGCAAGGTCAGCAACAGCATATAG
GTCAAGGTGTTCACAACCAGTCATGCCCCACCTATGCAAGTCAAGCCACC
ACCAATATGGCGCCGCCGCCCCCTCCTCAGTAGCTTCAGCTATGCAAGAC
CCCCTCCAAACCAAGGGAAAGGGTGCACCACCCCCGGTTGGCGGCAGCGC
CACACCTCCACAGCAATTGCTTGGAAAACCCCAATGCCCCCAATGTAATC
CCACCCCCCCCCCCCCCCAGGGCCCCCCCCCCCCCCCTCCGGGTTGAAAA
ACAAAAACTTTTTTTTAACCCGGGAAAATTTTAACAAAAATTTTTTTTAA
GGCCCCTTGTGTAAACACTCCCTGTTTTTTTCTCTTAAAAAAAAAAAAAA
AGGAATTTTGGTGGCGGCGAAAAAAAATAAACTTGTGGGGTGTGTCGCCC
CCTTTTTTAAAAAAAAACAAAGGAGGTAGGGAGGAAGAAA
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