DY262826

Overview
NameDY262826
Unique NameDY262826
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1330
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262826_ssr1008 microsatellite DY262826_ssr1008:1008..1019. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13386 contig Ccv1_Contig13386:209..1539. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY262826 vs. ExPASy Swiss-Prot
Match: ADLO1_ARATH (Protein ARABIDILLO 1 OS=Arabidopsis thaliana GN=FBX5 PE=1 SV=1)

HSP 1 Score: 423.32 bits (1087), Expect = 7.598e-135
Identity = 225/286 (78.67%), Postives = 236/286 (82.52%), Query Frame = 3
Query:    3 GGVHALVMLARSCKFEGVQEQXXXXXXXXXXHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNRXXXXXXXXXXXXXXXXQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFAL-IGT-STESTSKCVSLDGARRMALKHIEAFVLTFSDPQXXXXXXXXXXXXXLTQVTERARIQEAGHLRCSGAEIG 854
            GGVHALVMLAR+CK+EGVQEQ          HGDSN+NN+AVGQEAGALEALVQLT+SPHEGVRQEAAGALWNLSFDD+NR                QSCSNAS GLQERAAGALWGLSVSEAN +AIGREGGV PLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSS SKMARFMAALALAYMFDGRMDE+AL IGT S+ESTSK +SLDGAR MALKHIEAFVL+F DP              L QVTERARIQEAGHLRCSGAEIG
Sbjct:  564 GGVHALVMLARNCKYEGVQEQAARALANLAAHGDSNNNNAAVGQEAGALEALVQLTKSPHEGVRQEAAGALWNLSFDDKNRESISVAGGVEALVALAQSCSNASTGLQERAAGALWGLSVSEANSVAIGREGGVPPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSVSKMARFMAALALAYMFDGRMDEYALMIGTSSSESTSKNISLDGARNMALKHIEAFVLSFIDPHIFESPVVSSTPTMLAQVTERARIQEAGHLRCSGAEIG 849          

HSP 2 Score: 80.4925 bits (197), Expect = 7.598e-135
Identity = 41/71 (57.75%), Postives = 47/71 (66.20%), Query Frame = 2
Query:  854 RFITMLRNPSSVLKSCAAFALSQFTIPVARHAMHHATLMQGAGTTRVLAGSTXXXXXPI*NQIFAKNGLRN 1066
            RF+TMLRNP S LK+CAAFAL QFTIP  RHAMHH +LMQ  G +R L  +      P   +IF K  LRN
Sbjct:  850 RFVTMLRNPDSTLKACAAFALLQFTIPGGRHAMHHVSLMQNGGESRFLRSAAASAKTPREAKIFTKILLRN 920          

HSP 3 Score: 77.7962 bits (190), Expect = 1.628e-13
Identity = 68/223 (30.49%), Postives = 99/223 (44.39%), Query Frame = 3
Query:    3 GGVHALVMLARSCKFEGVQEQXXXXXXXXXXHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNRXXXXXXXXXXXXXXXXQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARS-EAEDVHETAAGALWNLA----FNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFALIGTSTES 656
            GG+  L+ LA+S + EG+Q +              N+N +    E G ++ L  L +S +  V +EAAG LWNLS  + ++                    N   G+ ERAAGAL  L+  +   + + + GGV  L+ LAR+ + E V E AA AL NLA     N  NA    E G + ALV L  S    + +  A       FD +  E   +    E+
Sbjct:  438 GGIRLLLELAKSWR-EGLQSEAAKAIANLSV----NANIAKSVAEEGGIKILAGLAKSMNRLVAEEAAGGLWNLSVGEEHKNAIAQAGGVKALVDLIFRWPNGCDGVLERAAGALANLAADDKCSMEVAKAGGVHALVMLARNCKYEGVQEQAARALANLAAHGDSNNNNAAVGQEAGALEALVQLTKSPHEGVRQEAAGALWNLSFDDKNRESISVAGGVEA 655          
BLAST of DY262826 vs. ExPASy Swiss-Prot
Match: ADLO2_ARATH (Protein ARABIDILLO 2 OS=Arabidopsis thaliana GN=At3g60350 PE=2 SV=1)

HSP 1 Score: 391.349 bits (1004), Expect = 6.651e-108
Identity = 207/297 (69.70%), Postives = 228/297 (76.77%), Query Frame = 3
Query:    3 GGVHALVMLARSCKFEGVQEQXXXXXXXXXXHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNRXXXXXXXXXXXXXXXXQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFALIGTSTESTSKCVSLDGARRMALKHIEAFVLTFSDPQXXXXXXXXXXXXXLTQVTERARIQEAGHLRCSGAEIGD-----SSPCYVI 878
            GGVHALVMLAR+CK+EG QEQ          HGDSN NN+AVGQEAGALEALVQLT+SPHEGV+QEAAGALWNL+FDD+NR                +S SNAS GLQER AGALWGLSVSEAN IAIG EGG+ PLIAL RSEAEDVHETAAGALWNL+FNPGNALRIVEEGGV ALV LCSSS SKMARFMAALALAYMFDGRMDE+A+IGTS ESTSK V+L+GAR MAL  I+AF+ TF + Q             L QV+ERARI EAGHLRCSG+EIG       +PC V+
Sbjct:  555 GGVHALVMLARNCKYEGAQEQAARALANLAAHGDSNGNNAAVGQEAGALEALVQLTQSPHEGVKQEAAGALWNLAFDDKNRESIAAFGGVEALVALAKSSSNASTGLQERVAGALWGLSVSEANSIAIGHEGGIPPLIALVRSEAEDVHETAAGALWNLSFNPGNALRIVEEGGVVALVQLCSSSVSKMARFMAALALAYMFDGRMDEYAMIGTSLESTSKSVTLNGARTMALDQIKAFIKTFMEHQIFSTGALSSAPSMLAQVSERARIPEAGHLRCSGSEIGRFVTMLRNPCLVL 851          

HSP 2 Score: 80.8777 bits (198), Expect = 1.929e-14
Identity = 42/71 (59.15%), Postives = 49/71 (69.01%), Query Frame = 2
Query:  854 RFITMLRNPSSVLKSCAAFALSQFTIPVARHAMHHATLMQGAGTTRVLAGSTXXXXXPI*NQIFAKNGLRN 1066
            RF+TMLRNP  VL++CAAFAL QFTIP +RHAMHHA+LMQ AG  R L  +      P   +IF K  LRN
Sbjct:  839 RFVTMLRNPCLVLRACAAFALLQFTIPESRHAMHHASLMQNAGEARGLRSAAAAASMPREAKIFMKIVLRN 909          

HSP 3 Score: 70.8626 bits (172), Expect = 1.990e-11
Identity = 66/205 (32.20%), Postives = 95/205 (46.34%), Query Frame = 3
Query:    6 GVHALVMLARSCKFEGVQEQXXXXXXXXXXHGDSNSNNSAVGQEA----GALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNRXXXXXXXXXXXXXXXXQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALA---RSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALA 599
            G   L+ L +S + E VQE+            D N++      EA    G +  L++L +S  EG++ EAA A+ NLS + +                  +S +     + E AAG LW LSV E +  AI + GGV  L+ L        + V E AAGAL NLA +   ++ +   GGV ALV L  +   + A+  AA ALA
Sbjct:  381 GATLLLSLMQSAQ-EDVQERAATGLATFIVVDDENASIDCGRAEAVMRDGGIRLLLELAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGISVLADLAKSMNRL---VAEEAAGGLWNLSVGEEHKNAIAQAGGVNALVDLIFRWPHGCDGVLERAAGALANLAADDKCSMEVARAGGVHALVMLARNCKYEGAQEQAARALA 581          
BLAST of DY262826 vs. ExPASy Swiss-Prot
Match: PUB13_ARATH (U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 8.079e-13
Identity = 54/180 (30.00%), Postives = 82/180 (45.56%), Query Frame = 3
Query:  108 NSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNRXXXXXXXXXXXXXXXXQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALALAYMFDGRMDEFALIGTS 647
            N++N     EAGA+  LV L  +P   +++ +  AL NLS  + N+                Q     S   +E AA  L+ LSV + N + IG  G + PL+ L     +   + AA AL+NL    GN  + +  G +P L  L +  GS M     ALA+  +     +  A+IG+S
Sbjct:  383 NADNRVAIAEAGAIPLLVGLLSTPDSRIQEHSVTALLNLSICENNKGAIVSAGAIPGIV---QVLKKGSMEARENAAATLFSLSVIDENKVTIGALGAIPPLVVLLNEGTQRGKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPGSGMVD--EALAILAILSSHPEGKAIIGSS 557          
BLAST of DY262826 vs. ExPASy Swiss-Prot
Match: PUB4_ARATH (U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 5.236e-12
Identity = 54/171 (31.58%), Postives = 82/171 (47.95%), Query Frame = 3
Query:  108 NSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNRXXXXXXXXXXXXXXXXQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMARFMAALA-LAYMFDGR 617
            N +N  V   +GA+  LV+L  S     ++ A  AL NLS +D N+                +   N S   +E +A  L+ LSV E N I IG+ G + PL+ L  +      + AA AL+NL+ +  N   IV+ G V  L+ L   +   + + +A LA LA + +GR
Sbjct:  572 NMDNRIVIGNSGAIVLLVELLYSTDSATQENAVTALLNLSINDNNKKAIADAGAIEPLIHVLE---NGSSEAKENSAATLFSLSVIEENKIKIGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDPAAGMVDKAVAVLANLATIPEGR 739          
BLAST of DY262826 vs. ExPASy Swiss-Prot
Match: PUB14_ARATH (U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.561e-11
Identity = 52/164 (31.71%), Postives = 75/164 (45.73%), Query Frame = 3
Query:  108 NSNNSAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNRXXXXXXXXXXXXXXXXQSCSNASPGLQERAAGALWGLSVSEANCIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSGSKMA-RFMAALAL 596
            N +N     EAGA+  LV+L  SP    ++ +  AL NLS ++ N+                +   N S   +E AA  L+ LSV + N +AIG  G +  LI+L         + AA A++NL    GN  R V+ G V  L  L   +G  M    +A LA+
Sbjct:  376 NVDNRVCIAEAGAIPLLVELLSSPDPRTQEHSVTALLNLSINEGNKGAIVDAGAITDIV---EVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIQALISLLEEGTRRGKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDAGGGMVDEALAILAI 536          
The following BLAST results are available for this feature:
BLAST of DY262826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ADLO1_ARATH7.598e-13578.67Protein ARABIDILLO 1 OS=Arabidopsis thaliana GN=FB... [more]
ADLO2_ARATH6.651e-10869.70Protein ARABIDILLO 2 OS=Arabidopsis thaliana GN=At... [more]
PUB13_ARATH8.079e-1330.00U-box domain-containing protein 13 OS=Arabidopsis ... [more]
PUB4_ARATH5.236e-1231.58U-box domain-containing protein 4 OS=Arabidopsis t... [more]
PUB14_ARATH7.561e-1131.71U-box domain-containing protein 14 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA10AC05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262826 ID=DY262826; Name=DY262826; organism=Citrus clementina; type=EST; length=1330bp
CAGGCGGCGTACATGCTCTAGTGATGCTTGCTCGCAGCTGCAAGTTTGAG
GGAGTGCAAGAGCAGGCTGCTCGCGCCTTGGCTAATTTGGCTGCTCATGG
AGATAGCAATAGCAACAATTCTGCTGTTGGACAAGAGGCAGGTGCCCTTG
AAGCCCTTGTTCAACTTACTCGCTCGCCCCATGAGGGTGTCAGGCAGGAG
GCTGCTGGTGCATTGTGGAATCTATCATTTGATGACAGGAACCGGGAAGC
AATTGCTGCAGCTGGTGGCGTTGAGGCATTGGTTGTCCTTGCACAATCCT
GTTCAAATGCCTCTCCAGGTCTGCAAGAGAGGGCTGCCGGTGCTCTTTGG
GGATTGTCGGTGTCTGAAGCTAACTGCATTGCCATTGGACGTGAAGGAGG
TGTTGCACCTTTGATTGCCCTGGCCCGCTCCGAGGCTGAAGATGTCCATG
AAACCGCTGCTGGAGCTCTTTGGAATCTTGCTTTTAACCCTGGTAATGCT
CTCCGTATAGTGGAGGAAGGGGGAGTTCCTGCCCTTGTTCATTTGTGCTC
TTCATCAGGTTCAAAGATGGCGAGATTTATGGCTGCCTTGGCATTGGCAT
ACATGTTCGATGGCAGAATGGATGAATTTGCGTTGATAGGAACTTCAACT
GAAAGCACTTCAAAGTGTGTGAGTTTGGATGGGGCTAGAAGGATGGCTCT
GAAGCATATTGAAGCATTTGTTCTTACATTTTCTGATCCACAAGCATTTG
CAACTGCTGCTGCATCATCTGCTCCAGCAGCATTGACTCAAGTGACAGAA
AGAGCACGTATTCAAGAAGCAGGACATTTGAGATGCAGTGGAGCTGAAAT
TGGAGATTCATCACCATGCTACGTAATCCTTCTTCTGTACTCAAGTCATG
TGCAGCATTTGCTCTTTCTCAGTTTACGATTCCTGTTGCCCGGCATGCTA
TGCATCATGCAACCCTTATGCAGGGTGCTGGAACAACCCGGGTTCTGGCG
GGCAGCACAGCAGCAGCAGCTGCTCCAATTTGAAACCAAATTTTTGCTAA
AAATGGACTTCGCAACCAAAACATCATCCCCCTGTAAAATTTTTAAAAAA
AAAAAAGGGAATGTCCAGGGTAACCTCATCGTGGGCCCCCCCTGGAAATC
CGGGAAAAAGGCCCTTTTTTTTTGAGCCTGGGAAGCCAAGTTGGAAAAAA
AAAAAGTGGAAAAAAATATTTTTGGTTTAACCCTGTTAAAATTATCTAAA
TGTTATATTAGAAAAACCCAAAAAAAAATTTTTTTTGGTGTTTTAATTTT
TTTTTTTTCTTCTCCCTCCCGGGTGCCCCC
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