DY262843

Overview
NameDY262843
Unique NameDY262843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1272
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262843_ssr74 microsatellite DY262843_ssr74:74..85. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2367 contig Ccv1_Contig2367:1..1272. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY262843 vs. ExPASy Swiss-Prot
Match: S35C2_HUMAN (Solute carrier family 35 member C2 OS=Homo sapiens GN=SLC35C2 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 7.602e-13
Identity = 63/277 (22.74%), Postives = 117/277 (42.24%), Query Frame = 2
Query:  122 IALWIALSSSVILFNKWVLDPRKANFNFPLFLTTWHMVFATAMTQILARFTTILDSRHKVPMNPTTYSRAILPIGIMFSLSLICGNLAYLYLSVSFIQMLKATNAVATLLATWAFGIAPTNMKALSNVLVIVFGVVIASFGEIQFDMIGFLIQVAGIVFEALRLVMVQRLLSSAE----------FKMDPLVSLYYYAPACAVTNGI-------VTLFTD-------LPRITMGDIYGLGLGTXXXXXXXXXXXXXXXXXXIGKTSAVVLTMAGVLK 880
            + L+   S  +  +NKW+      +F+FPLF+T  H+      + +          R +V ++   Y R + P  +  +L +   N ++LY++VS   M K++  +  L+ +  F +       +  VL+I  G+ + ++   QF++ GF + +       +R  + Q LL  AE          F + PL+ L  + P  AV  G+       +  F D       L  + +G I   GLG                   + +TS++ L++AG+ K
Sbjct:   21 VLLYYCFSIGITFYNKWLTK----SFHFPLFMTMLHLAVIFLFSALSRALVQCSSHRARVVLSWADYLRRVAPTALATALDVGLSNWSFLYVTVSLYTMTKSSAVLFILIFSLIFKLEELRAALVLVVLLIAGGLFMFTYKSTQFNVEGFALVLGASFIGGIRWTLTQMLLQKAELGLQNPIDTMFHLQPLMFLGLF-PLFAVFEGLHLSTSEKIFRFQDTGLLLRVLGSLFLGGILAFGLG-------------FSEFLLVSRTSSLTLSIAGIFK 279          
BLAST of DY262843 vs. ExPASy Swiss-Prot
Match: S35C2_MOUSE (Solute carrier family 35 member C2 OS=Mus musculus GN=Slc35c2 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.297e-12
Identity = 61/277 (22.02%), Postives = 118/277 (42.60%), Query Frame = 2
Query:  122 IALWIALSSSVILFNKWVLDPRKANFNFPLFLTTWHMVFATAMTQILARFTTILDSRHKVPMNPTTYSRAILPIGIMFSLSLICGNLAYLYLSVSFIQMLKATNAVATLLATWAFGIAPTNMKALSNVLVIVFGVVIASFGEIQFDMIGFLIQVAGIVFEALRLVMVQRLLSSAE----------FKMDPLVSLYYYAPACAVTNGI-------VTLFTD-------LPRITMGDIYGLGLGTXXXXXXXXXXXXXXXXXXIGKTSAVVLTMAGVLK 880
            + L+   S  +  +NKW+      +F+FPLF+T  H+      + +          + +V ++ T Y R + P  +  +L +   N ++LY++VS   M K++  +  L+ +  F +       +  VL+I  G+ + ++   QF++ GF + +       +R  + Q LL  A+          F + PL+ L  + P  A+  G+       +  F D       L  + +G I   GLG                   + +TS++ L++AG+ K
Sbjct:   21 VLLYYCFSIGITFYNKWLTK----SFHFPLFMTMLHLAVIFLFSALSRALVQCSSHKARVVLSWTDYLRRVAPTALATALDVGLSNWSFLYITVSLYTMTKSSAVLFILIFSLIFKLEELRAALVLVVLLIAGGLFMFTYKSTQFNVEGFALVLGASFIGGIRWTLTQILLQKADLGLQNPIDTMFHLQPLMFLGLF-PLFAIFEGLHLSTSEKIFRFQDTGLLLWVLGSLLLGGILAFGLG-------------FSEFLLVSRTSSLTLSIAGIFK 279          
BLAST of DY262843 vs. ExPASy Swiss-Prot
Match: FUCT1_DICDI (GDP-fucose transporter 1 OS=Dictyostelium discoideum GN=slc35c1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.194e-11
Identity = 47/181 (25.97%), Postives = 89/181 (49.17%), Query Frame = 2
Query:  113 AFYIALWIALSSSVILFNKWVLDPRKANFNFPLFLTTWHMVFATAMTQILARFTTILDSRHKVP---MNPTTYSRAILPIGIMFSLSLICGNLAYLYLSVSFIQMLKATNAVATLLATWAFGIAPTNMKALSNVLVIVFGVVIASFGEIQFDMIGFLIQVAGIVFEALRLVMVQRLLSSAE 646
            A  IA +  +S S++  NK +L   K  F +PLF+T +  + +     I+   +  + +   +P       T S+ +LP+  + +  +I  NL   Y+ VSF Q+ ++     +L+ T+    + T+ +A    LV+  G V+ S GE+ F  +G +  +    F AL  + V+R+L + +
Sbjct:   68 ASVIAFYFFISISLVFLNKILLSDFK--FEYPLFITWYQQIISFVSIYIMTSISKSVPALSFLPEFEFKSATASK-VLPVTAVLTGMVIFNNLCLEYVEVSFYQVARSLTICFSLILTYIVLKSKTSYRATMACLVVFLGFVLGSAGEVNFSWLGIIFGLLSSFFVALYSIAVKRVLPAVD 245          
The following BLAST results are available for this feature:
BLAST of DY262843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
S35C2_HUMAN7.602e-1322.74Solute carrier family 35 member C2 OS=Homo sapiens... [more]
S35C2_MOUSE1.297e-1222.02Solute carrier family 35 member C2 OS=Mus musculus... [more]
FUCT1_DICDI3.194e-1125.97GDP-fucose transporter 1 OS=Dictyostelium discoide... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA10AD11RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262843 ID=DY262843; Name=DY262843; organism=Citrus clementina; type=EST; length=1272bp
CTCTTTCGATTCCTTCTTTCACACAATGGCAAACGGTCGCTCATCGCAGG
ATGAGCGTAAGCTCGAGGGTGGCGCTGCTGCTGCTCCTCCCCAGGACAAT
GGTCTCCACCCGGCCTTCTACATTGCGCTGTGGATTGCTCTGAGTTCCAG
TGTTATCCTGTTCAACAAATGGGTGTTGGATCCTCGCAAGGCCAACTTCA
ACTTCCCCCTGTTCTTGACTACCTGGCACATGGTGTTCGCGACTGCGATG
ACCCAGATTCTCGCTCGCTTCACCACCATCCTCGACTCGCGCCACAAGGT
TCCCATGAACCCGACCACCTACTCTCGCGCCATTCTGCCCATTGGAATCA
TGTTCAGTTTGAGTCTGATCTGTGGTAACCTGGCTTACCTCTACCTGAGT
GTTTCCTTCATTCAGATGCTGAAGGCCACCAACGCCGTCGCGACCCTTCT
GGCCACCTGGGCTTTCGGTATCGCCCCCACCAACATGAAGGCTCTCAGCA
ACGTGCTGGTGATCGTGTTCGGTGTCGTGATTGCCTCCTTCGGTGAGATC
CAGTTCGACATGATCGGTTTCCTCATCCAGGTCGCCGGTATCGTCTTCGA
GGCCCTCCGTCTCGTCATGGTCCAGCGTCTCCTTAGCTCCGCCGAGTTCA
AGATGGACCCCCTGGTCTCTCTTTACTACTACGCCCCCGCCTGTGCCGTG
ACCAACGGTATCGTCACCCTCTTCACCGATCTTCCCCGCATCACCATGGG
CGACATCTACGGCCTCGGACTCGGTACTCTCGTTGCCAACGCCCTGGTTG
CCTTCCTCCTCAACGCCTCCGTCGTCCTGCTGATCGGCAAGACCTCCGCC
GTTGTCCTGACCATGGCCGGTGTCCTGAAGATATCCTCCTGGTCGCCGCC
TCCATGATCATCCTTCTTGACCCCGTCACTCCTCAGCAAGTCTTCGGGTA
CTCCATTGCCCTGGCTGGTCTGGTCTACTACAAACTCGGTGGCTGAAAGT
GCAACAACAGGGTTGCCGATGTGCGCCCTCCAGGTTGGCAAATACAACGC
GCCCACCCTGCCCGCCCCAAAGGCATCCCCCTCCGGGGTCCCTGGCGTTT
TCGTCCTGTTGTTTTGGAAAACAACGGGTCCTTCCCCCCCCTCCGGTCCC
AAAATAAGGGCCCGAAGGCGGCCGGGAAAAAAAAACCATTTAGGGGGAAA
TTCTTCCCGGGGCCAAAAAACCTTTTCTCTTGTGGGGGGATTTTCTCAAT
AAAACCAAAGCCCTGCGGGGGG
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