DY262995

Overview
NameDY262995
Unique NameDY262995
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1334
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY262995 vs. ExPASy Swiss-Prot
Match: Y875_SYNY3 (Uncharacterized membrane protein sll0875 OS=Synechocystis sp. (strain PCC 6803) GN=sll0875 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.384e-32
Identity = 53/94 (56.38%), Postives = 65/94 (69.15%), Query Frame = 1 
Query:  661 GVEFSRLW-QLGFVASFCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVSVEGTFAGIFASILLASVGCLTGQINATEAVICVNASQIA 939
            G E  +LW  LG+VASF TKLSDT +SE+GKAYGK T+L+TT + VPRGTEGAVSVEGT AG  A + LA +G   G I+    +    A+ IA
Sbjct:  120 GPEPWQLWLALGYVASFSTKLSDTTASEVGKAYGKNTFLITTLQPVPRGTEGAVSVEGTLAGFAAGLALAVLGYGVGLISFGGIIFSTLAAFIA 213

HSP 2 Score: 65.0846 bits (157), Expect = 5.384e-32
Identity = 40/133 (30.08%), Postives = 60/133 (45.11%), Query Frame = 3 
Query:  255 WQSALLSNVVIFVLGSPILVSGLSPSGIAAAFLLGTLTWRAFGPSGFLLVATYFILVTRTKIFLLCDFTTQS*WIIDSLLLVLLSQGTAATKVKMAQKEAQGVAEKRKGRRGPGSVIGSSAAGCVSAFLSIFG 653
            W SA++ N  +  L +      L+P G   A++LG + W A G  G+L+V  YF +                              G+A T++   +KEA G+AEKR G+RGP +V GS+    + A    FG
Sbjct:   18 WLSAVILNSFLLALAAIAPKKLLTPWGYGHAWVLGVIIWAALGWRGYLVVLAYFFV------------------------------GSAVTRIGQKEKEAAGIAEKRSGQRGPENVWGSALTAALCALAIAFG 120
The following BLAST results are available for this feature:
BLAST of DY262995 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y875_SYNY35.384e-3256.38Uncharacterized membrane protein sll0875 OS=Synech... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA10CB06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262995 ID=DY262995; Name=DY262995; organism=Citrus clementina; type=EST; length=1334bp
AAAAAGAAAAATAAAAAATGTCAACTGCACTCTACATCATCAAATCACCT
CCGGTTCCTGCCCTGTGGTTCCCGCATTCACTCCAAAAAACACCCAAATT
CGAATTTCCCATTTTCAGAAACCCTAACATTTCCAATTCGACTTCCAATT
GCAACAGCAGTAAAATGTTGTTGCTTCACAGAGCCAACGCGGCTCCTTCC
TTGCAAGTCGCAGTATCGGAGGCCGTGAACCTGGTCCAATTGTCTCAGCC
CACGTGGCAGTCCGCTCTGCTCAGCAACGTCGTCATCTTCGTCTTAGGCT
CTCCGATTTTGGTCTCCGGTTTGTCTCCCTCAGGAATCGCCGCCGCATTC
TTGCTCGGCACGCTCACGTGGCGAGCGTTCGGCCCCTCCGGCTTTCTCCT
CGTCGCCACTTACTTCATACTCGTAACTCGAACCAAAATCTTCTTGCTTT
GCGATTTTACTACTCAAAGCTAATGGATTATTGATTCATTATTATTAGTA
CTTCTCTCTCAGGGTACAGCGGCAACGAAAGTGAAAATGGCTCAAAAGGA
AGCTCAAGGGGTAGCTGAGAAGAGGAAAGGAAGGCGTGGACCGGGCAGTG
TGATTGGTTCCAGTGCTGCTGGTTGTGTCAGTGCTTTTCTTTCGATTTTC
GGAGTANGGGGGGGTTGAGTTTTCTCGGCTTTGGCAACTCGGGTTTGTCG
CCAGTTTCTGTACTAAGTTGAGTGATACTGTCTCAAGCGAGATAGGCAAA
GCATATGGCAAAACGACGTACCTAGTAACAACGTTTAAAGTGGTTCCTAG
GGGAACGGAAGGAGCTGTCAGTGTTGAGGGAACATTTGCTGGCATTTTTG
CTTCAATTCTTCTTGCTTCGGTTGGTTGTCTTACGGGCCAGATAAATGCA
ACTGAGGCAGTTATATGCGTGAATGCTTCCCAGATTGCTAAATCTGGGTG
AGAACATAATAGGCGCTGCACTCCAAGAAAACCAGGAATTAAATGGGTAA
ATAAAGATGCTGTGAACAATAACAAAATATCCAGGGGCAGCATTTTTGCA
AGCCTGATGCACAAATTTGGTCCCAAAACTTGGAAACTGAATTCAGGAAG
AAATTTGGGACACCAAATTTCGCCTACCAGGTCTAATTTATGCCTGGTAG
GAAAAAAAAGGTTATGAACACTTTAAACCCAAAGGATGTAACCTTTCTAA
AAAGAAAGGAGGGGGGGGAAAAAATTTTCTCCCTTTTTTTTTTCCCCCCC
CCCGCGCAAAAAAAATTTTTATTTTTTTGTGTGGGGGCCCCCCCCCCCCC
CCACTTTTTTTTGTGGCCATTATTTTTTTCCCCC
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